Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 5
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13750.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT3G13750.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT3G13750.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G359500.1 | Wheat | golgi | 97.91 | 98.05 |
| TraesCS7A01G363600.1 | Wheat | plasma membrane, vacuole | 95.96 | 95.96 |
| HORVU7Hr1G086690.2 | Barley | plasma membrane, vacuole | 96.66 | 92.91 |
| Zm00001d046357_P001 | Maize | extracellular | 88.16 | 87.67 |
| EER88554 | Sorghum | golgi, vacuole | 88.44 | 87.59 |
| Os06t0573600-01 | Rice | plasma membrane, vacuole | 84.68 | 85.03 |
| TraesCS6B01G214100.1 | Wheat | golgi, vacuole | 82.31 | 81.52 |
| GSMUA_Achr7P08970_001 | Banana | vacuole | 72.42 | 71.23 |
| GSMUA_Achr6P00880_001 | Banana | golgi, vacuole | 72.14 | 70.57 |
| CDX88594 | Canola | golgi, vacuole | 31.89 | 70.46 |
| GSMUA_Achr7P08960_001 | Banana | endoplasmic reticulum, golgi, vacuole | 71.73 | 69.97 |
| GSMUA_Achr7P08940_001 | Banana | vacuole | 71.03 | 69.67 |
| GSMUA_Achr7P08950_001 | Banana | golgi, vacuole | 71.17 | 69.43 |
| CDX76255 | Canola | extracellular | 12.26 | 68.75 |
| PGSC0003DMT400000899 | Potato | nucleus, peroxisome, vacuole | 61.42 | 65.82 |
| CDX94367 | Canola | mitochondrion | 64.76 | 65.31 |
| Bra019644.1-P | Field mustard | golgi, plastid, vacuole | 64.07 | 64.61 |
| Solyc12g008840.1.1 | Tomato | extracellular | 65.04 | 64.5 |
| KRH37385 | Soybean | nucleus | 64.35 | 64.08 |
| KRH12385 | Soybean | vacuole | 64.07 | 63.8 |
| CDX95380 | Canola | vacuole | 64.35 | 63.55 |
| Bra013956.1-P | Field mustard | cytosol, mitochondrion, plastid, vacuole | 64.62 | 63.39 |
| AT5G56870.1 | Thale cress | vacuole | 63.79 | 63.26 |
| CDX89360 | Canola | mitochondrion | 61.0 | 62.66 |
| CDX92753 | Canola | golgi, vacuole | 61.98 | 62.5 |
| Bra019120.1-P | Field mustard | golgi, vacuole | 61.98 | 62.5 |
| Bra006850.1-P | Field mustard | golgi, vacuole | 62.81 | 62.47 |
| CDY11899 | Canola | golgi, vacuole | 62.81 | 62.47 |
| CDY42755 | Canola | vacuole | 61.84 | 62.36 |
| CDX76254 | Canola | golgi, nucleus, vacuole | 50.84 | 62.07 |
| GSMUA_Achr2P16780_001 | Banana | plastid | 72.7 | 62.07 |
| AT4G26140.7 | Thale cress | vacuole | 64.62 | 61.62 |
| CDY32919 | Canola | golgi, vacuole | 61.28 | 60.94 |
| Bra035634.1-P | Field mustard | golgi, vacuole | 61.14 | 60.8 |
| CDY20708 | Canola | golgi, vacuole | 61.0 | 60.66 |
| TraesCS3B01G235100.1 | Wheat | golgi, vacuole | 68.11 | 58.42 |
| VIT_09s0002g02120.t01 | Wine grape | golgi, vacuole | 67.97 | 58.03 |
| AT3G52840.2 | Thale cress | golgi, vacuole | 63.09 | 58.0 |
| CDY23637 | Canola | golgi, vacuole | 67.69 | 57.93 |
| Bra027403.1-P | Field mustard | golgi, vacuole | 67.69 | 57.93 |
| KRH44153 | Soybean | nucleus | 67.97 | 57.89 |
| CDX97513 | Canola | golgi, vacuole | 67.55 | 57.74 |
| KRH47126 | Soybean | nucleus | 67.83 | 57.63 |
| KRH10007 | Soybean | nucleus | 67.41 | 57.62 |
| AT3G13750.1 | Thale cress | golgi, vacuole | 67.69 | 57.38 |
| KRH23324 | Soybean | vacuole | 67.13 | 57.31 |
| CDY51738 | Canola | golgi, vacuole | 66.85 | 57.21 |
| CDY37486 | Canola | golgi, vacuole | 66.43 | 56.85 |
| CDY69471 | Canola | cytosol | 32.87 | 56.73 |
| Solyc03g121540.2.1 | Tomato | nucleus | 66.16 | 56.68 |
| PGSC0003DMT400006654 | Potato | golgi, vacuole | 66.02 | 56.56 |
| PGSC0003DMT400083896 | Potato | extracellular | 65.74 | 56.53 |
| Solyc12g044880.1.1 | Tomato | golgi, vacuole | 65.6 | 56.41 |
| Solyc06g062580.2.1 | Tomato | nucleus | 65.88 | 56.24 |
| PGSC0003DMT400012359 | Potato | golgi, vacuole | 65.6 | 56.07 |
| CDY70594 | Canola | cytosol | 32.45 | 56.01 |
| Bra021506.1-P | Field mustard | vacuole | 66.99 | 55.87 |
| KRH02714 | Soybean | golgi, vacuole | 65.18 | 55.78 |
| KRH19154 | Soybean | golgi, mitochondrion, plastid, vacuole | 65.04 | 55.66 |
| VIT_11s0016g02200.t01 | Wine grape | vacuole | 64.76 | 55.62 |
| TraesCS4B01G280900.1 | Wheat | golgi, vacuole | 62.95 | 53.49 |
| TraesCS4B01G220500.1 | Wheat | golgi | 54.74 | 46.07 |
| PGSC0003DMT400011458 | Potato | cytosol, nucleus, peroxisome | 27.16 | 43.62 |
| TraesCS3B01G418400.2 | Wheat | vacuole | 50.97 | 43.36 |
| TraesCS3B01G418300.2 | Wheat | vacuole | 50.42 | 42.19 |
| TraesCS5B01G142600.1 | Wheat | unclear | 51.95 | 40.94 |
| TraesCS1B01G030400.1 | Wheat | vacuole | 46.94 | 40.55 |
| TraesCS1B01G278400.1 | Wheat | plastid | 44.99 | 39.2 |
| TraesCS3B01G418200.1 | Wheat | vacuole | 42.62 | 36.73 |
| TraesCS7B01G169700.1 | Wheat | vacuole | 43.04 | 35.48 |
| TraesCS5B01G331300.1 | Wheat | golgi, vacuole | 39.83 | 34.09 |
Protein Annotations
| KEGG:00052+3.2.1.23 | KEGG:00511+3.2.1.23 | KEGG:00531+3.2.1.23 | KEGG:00600+3.2.1.23 | KEGG:00604+3.2.1.23 | Gene3D:2.60.120.260 |
| MapMan:21.3.2.2.2 | Gene3D:3.20.20.80 | InterPro:BetaGal_jelly_roll_dom | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:Galactose-bd-like_sf | InterPro:Gly_Hdrlase_35_cat |
| InterPro:Glyco_hydro_35_CS | InterPro:Glycoside_Hdrlase_35 | InterPro:Glycoside_hydrolase_SF | InterPro:IPR008979 | PFAM:PF01301 | PFAM:PF13364 |
| PRINTS:PR00742 | ScanProsite:PS01182 | PANTHER:PTHR23421 | PANTHER:PTHR23421:SF120 | SUPFAM:SSF49785 | SUPFAM:SSF51445 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS7B01G264200 | EnsemblPlants:TraesCS7B01G264200.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr7B:-:484612469..484616587
Molecular Weight (calculated)
78732.9 Da
IEP (calculated)
8.338
GRAVY (calculated)
-0.252
Length
718 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSGGAGVLL LALLAAAAAV ANAAVSYDHR AVVINGQRRI LMSGSIHYPR STPEMWPDLI QKAKDGGLDV IQTYVFWNGH EPARGQYYFA DRYDLVRFVK
101: LAKQAGLYVH LRIGPYVCAE WNFGGFPVWL KYVPGISFRT DNGPFKAEMQ RFVEKIVSMM KSEGLFEWQG GPIILAQVEN EYGPMESAMG AGAKPYANWA
201: AKMAVATDAG VPWVMCKQDD APDPVINSCN GFYCDYFSPN SNSKPTMWTE AWTGWFTAFG GAVPHRPVED MAFAVARFIQ KGGSFVNYYM YHGGTNFDRT
301: AGGPFIATSY DYDAPIDEYG LIRQPKWGHL RDLHKAIKQA EPALVSGDPT VQRIGNYEKA YVFKSSTGAC AAFLSNYHTS SAARVVYNGR RYDLPAWSIS
401: ILPDCKTAVF NTATVKEPSL PAKMNPAGGF AWQSYSEDTN ALDSSAFTKD GLVEQLSMTW DKSDYLWYTT YVNIDSSEQF LKSGQWPQLT INSAGHSVQV
501: FVNGQSFGVA YGGYNSPKLT YSKPVKMWQG SNKISILSSA MGLPNQGTHY EAWNVGVLGP VTLSGLNQGK RDLSNQKWTY QIGLKGESLG VNSISGSSSV
601: EWSSASGAQP LTWHKAYFAA PGGSAPVALD MGSMGKGQIW VNGHNAGRYW SYRASGSCGA CSYTGTFSET KCQTNCGDIS QRWYHVPRSW LKPSGNLLVV
701: LEEFGGDLSR VTLMTRTT
101: LAKQAGLYVH LRIGPYVCAE WNFGGFPVWL KYVPGISFRT DNGPFKAEMQ RFVEKIVSMM KSEGLFEWQG GPIILAQVEN EYGPMESAMG AGAKPYANWA
201: AKMAVATDAG VPWVMCKQDD APDPVINSCN GFYCDYFSPN SNSKPTMWTE AWTGWFTAFG GAVPHRPVED MAFAVARFIQ KGGSFVNYYM YHGGTNFDRT
301: AGGPFIATSY DYDAPIDEYG LIRQPKWGHL RDLHKAIKQA EPALVSGDPT VQRIGNYEKA YVFKSSTGAC AAFLSNYHTS SAARVVYNGR RYDLPAWSIS
401: ILPDCKTAVF NTATVKEPSL PAKMNPAGGF AWQSYSEDTN ALDSSAFTKD GLVEQLSMTW DKSDYLWYTT YVNIDSSEQF LKSGQWPQLT INSAGHSVQV
501: FVNGQSFGVA YGGYNSPKLT YSKPVKMWQG SNKISILSSA MGLPNQGTHY EAWNVGVLGP VTLSGLNQGK RDLSNQKWTY QIGLKGESLG VNSISGSSSV
601: EWSSASGAQP LTWHKAYFAA PGGSAPVALD MGSMGKGQIW VNGHNAGRYW SYRASGSCGA CSYTGTFSET KCQTNCGDIS QRWYHVPRSW LKPSGNLLVV
701: LEEFGGDLSR VTLMTRTT
001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA
Arabidopsis Description
BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]
SUBAcon: [golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.