Factsheet for TraesCS4B01G220500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 6
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G083700.3	Wheat	extracellular	96.48	96.48
TraesCS4D01G220800.2	Wheat	vacuole	96.13	94.58
HORVU0Hr1G008780.10	Barley	plasma membrane, vacuole	95.55	93.79
EER92534	Sorghum	endoplasmic reticulum, golgi	83.82	83.14
Zm00001d028474_P002	Maize	vacuole	83.7	79.51
Os03t0255100-01	Rice	extracellular	84.17	75.1
KRH29942	Soybean	extracellular, golgi, vacuole	66.82	68.02
KRH22910	Soybean	nucleus	66.82	67.86
VIT_06s0004g03020.t01	Wine grape	extracellular	67.06	67.61
GSMUA_Achr4P20830_001	Banana	golgi, vacuole	68.93	67.51
KRH26431	Soybean	golgi, vacuole	65.53	66.55
KRG89008	Soybean	nucleus	64.83	66.15
CDY15749	Canola	golgi, vacuole	65.06	65.76
Bra011946.1-P	Field mustard	golgi, vacuole	64.95	65.56
Bra000493.1-P	Field mustard	golgi, vacuole	64.83	65.52
AT2G28470.1	Thale cress	endoplasmic reticulum, golgi, vacuole	65.42	65.49
CDY04567	Canola	golgi, vacuole	65.06	65.29
CDY31204	Canola	golgi, vacuole	64.48	65.17
PGSC0003DMT400020941	Potato	extracellular	65.06	65.14
Solyc11g069270.1.1	Tomato	extracellular	64.83	64.91
CDX83288	Canola	golgi, vacuole	64.24	64.85
GSMUA_Achr4P22060_001	Banana	golgi, vacuole	63.54	64.52
TraesCS6B01G214100.1	Wheat	golgi, vacuole	47.01	55.31
TraesCS7B01G264200.1	Wheat	plasma membrane, vacuole	46.07	54.74
TraesCS4B01G280900.1	Wheat	golgi, vacuole	52.99	53.49
TraesCS3B01G235100.1	Wheat	golgi, vacuole	51.35	52.33
TraesCS3B01G418400.2	Wheat	vacuole	51.0	51.54
TraesCS3B01G418300.2	Wheat	vacuole	49.36	49.07
TraesCS5B01G142600.1	Wheat	unclear	51.93	48.63
TraesCS1B01G030400.1	Wheat	vacuole	45.25	46.45
TraesCS1B01G278400.1	Wheat	plastid	44.08	45.63
TraesCS3B01G418200.1	Wheat	vacuole	41.03	42.02
TraesCS7B01G169700.1	Wheat	vacuole	39.74	38.92
TraesCS5B01G331300.1	Wheat	golgi, vacuole	37.63	38.26

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0030246	GO:GO:0030312	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat
InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979	InterPro:Lectin_gal-bd_dom
PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228	PANTHER:PTHR23421
PANTHER:PTHR23421:SF72	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4B01G220500
EnsemblPlants:TraesCS4B01G220500.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:463709839..463714746

Molecular Weight (calculated)

92478.3 Da

IEP (calculated)

6.658

GRAVY (calculated)

-0.182

Length

853 amino acids

Sequence
(BLAST)

001: MAAVGRLPSA AVALLLALLC LAGTSAATNV TYDHRALVID GVRRVLVSGS IHYPRSTPDM WPGLMQKAKD GGLDMVETYV FWDVHEPVRG QYDFEGRNDL
101: VRFVKAAADA GLYVHLRIGP YVCAEWNYGG FPLWLHFIPG IKFRTDNEPF KTEMQRFTEK VVATMKGAGL YASQGGPIIL SQIENEYGNI DWQYGDAGKS
201: YMRWAAGMAV ALDTGVPWVM CQQADAPAPL INTCNGFYCD QFTPSLPSSP KLWTENWSGW FLSFGGAVPY RPTEDLAFAV ARFYQRGGTL QNYYMYHGGT
301: NFGRSSGGPF ISTSYDYDAP IDEYGLVRQP KWGHLRDVHK AIKMCEPALI ATNPSYMSLG QNAEAHVYRA GSLCAAFLAN MDEQSDKTVT FNGKAYKLPA
401: WSVSVLPDCK NVVLNTAQIN SQVASTQMRN LGFRTQASYG SSVETELASS TWSYAVEPVG ITKENAMTKP GLMEQINTTA DASDFLWYST SVVVKGGEPY
501: LNGSQSNLLV NSLGHVLQVF INGKFAGSSK GNASSSLISL TTPVTLVPGK NKIDLLSATV GLTNYGAFFD LVGAGITGPV KLTGPKGMLD LSSADWTYQI
601: GLRGEDLHLY NPSEASPEWV SDNSYPTNYP LTWYKSKFTA PAGDDPVAID FTGMGKGEAW VNGQSIGRYW PTNISPQSGC VNSCNYRGTY SAKKCLKKCG
701: QPSQILYHVP RSFLQPGSND IVLFEQFGGD PSKISFTTKQ TESVCAHVSE DHPDQIDSWI SPQQKLQRSG PALRLECPKE GQVISSIKFA SFGTPSGTCG
801: SYSHGECSSS QALAVAQEAC VGVSSCSLPV SAKNFGDPCR GVTKSLVVEA ACS

Best Arabidopsis Sequence Match ( AT2G28470.3 )
(BLAST)

001: MEIAAKMVKV RKMEMILLLI LVIVVAATAA NVTYDHRALV IDGKRKVLIS GSIHYPRSTP EMWPELIQKS KDGGLDVIET YVFWSGHEPE KNKYNFEGRY
101: DLVKFVKLAA KAGLYVHLRI GPYVCAEWNY GGFPVWLHFV PGIKFRTDNE PFKEEMQRFT TKIVDLMKQE KLYASQGGPI ILSQIENEYG NIDSAYGAAA
201: KSYIKWSASM ALSLDTGVPW NMCQQTDAPD PMINTCNGFY CDQFTPNSNN KPKMWTENWS GWFLGFGDPS PYRPVEDLAF AVARFYQRGG TFQNYYMYHG
301: GTNFDRTSGG PLISTSYDYD APIDEYGLLR QPKWGHLRDL HKAIKLCEDA LIATDPTITS LGSNLEAAVY KTESGSCAAF LANVDTKSDA TVTFNGKSYN
401: LPAWSVSILP DCKNVAFNTA KINSATESTA FARQSLKPDG GSSAELGSQW SYIKEPIGIS KADAFLKPGL LEQINTTADK SDYLWYSLRT DIKGDETFLD
501: EGSKAVLHIE SLGQVVYAFI NGKLAGSGHG KQKISLDIPI NLVTGTNTID LLSVTVGLAN YGAFFDLVGA GITGPVTLKS AKGGSSIDLA SQQWTYQVGL
601: KGEDTGLATV DSSEWVSKSP LPTKQPLIWY KTTFDAPSGS EPVAIDFTGT GKGIAWVNGQ SIGRYWPTSI AGNGGCTESC DYRGSYRANK CLKNCGKPSQ
701: TLYHVPRSWL KPSGNILVLF EEMGGDPTQI SFATKQTGSN LCLTVSQSHP PPVDTWTSDS KISNRNRTRP VLSLKCPIST QVIFSIKFAS FGTPKGTCGS
801: FTQGHCNSSR SLSLVQKACI GLRSCNVEVS TRVFGEPCRG VVKSLAVEAS CS

Arabidopsis Description

BGAL8Beta-galactosidase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV4]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.