Factsheet for TraesCS1B01G278400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G267600.2	Wheat	endoplasmic reticulum, extracellular, vacuole	96.6	97.07
TraesCS1A01G267700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	96.6	96.6
HORVU1Hr1G065290.7	Barley	vacuole	93.2	93.43
Os05t0428100-00	Rice	golgi, vacuole	79.0	80.27
Zm00001d010212_P002	Maize	endoplasmic reticulum, extracellular, golgi	77.79	78.17
KXG22057	Sorghum	vacuole	78.76	77.63
TraesCS3B01G418200.1	Wheat	vacuole	71.36	70.59
VIT_07s0031g02590.t01	Wine grape	extracellular, golgi, vacuole	33.86	60.52
GSMUA_Achr11P...	Banana	golgi, vacuole	59.34	59.85
KRH40964	Soybean	golgi, vacuole	49.88	58.38
Solyc11g018500.1.1	Tomato	cytosol, golgi, vacuole	48.66	57.7
VIT_18s0001g02220.t01	Wine grape	vacuole	56.19	56.95
KRH53958	Soybean	golgi, vacuole	49.15	56.49
KRH63978	Soybean	golgi, vacuole	49.15	56.49
KRH53267	Soybean	golgi, vacuole	47.69	56.38
KRH64633	Soybean	vacuole	47.45	56.18
Bra024237.1-P	Field mustard	vacuole	34.1	56.09
PGSC0003DMT400023852	Potato	extracellular	42.72	55.96
PGSC0003DMT400023851	Potato	nucleus, peroxisome, vacuole	48.66	55.39
VIT_18s0001g02230.t01	Wine grape	golgi, vacuole	54.85	55.05
Solyc11g018490.1.1	Tomato	cytosol	50.36	54.97
Bra029200.1-P	Field mustard	vacuole	47.33	54.17
CDX84445	Canola	vacuole	47.33	54.17
AT5G63800.1	Thale cress	vacuole	47.09	54.04
AT1G77410.3	Thale cress	golgi, vacuole	53.64	53.9
CDY39845	Canola	vacuole	47.09	53.89
CDY31349	Canola	vacuole	47.33	52.63
CDY43756	Canola	cytosol, nucleus, peroxisome	32.28	52.16
TraesCS3B01G235100.1	Wheat	golgi, vacuole	46.36	45.64
TraesCS6B01G214100.1	Wheat	golgi, vacuole	39.93	45.38
TraesCS7B01G264200.1	Wheat	plasma membrane, vacuole	39.2	44.99
TraesCS4B01G280900.1	Wheat	golgi, vacuole	45.75	44.62
TraesCS4B01G220500.1	Wheat	golgi	45.63	44.08
TraesCS7B01G169700.1	Wheat	vacuole	45.02	42.59
TraesCS3B01G418400.2	Wheat	vacuole	41.75	40.76
TraesCS5B01G331300.1	Wheat	golgi, vacuole	40.9	40.17
TraesCS3B01G418300.2	Wheat	vacuole	41.02	39.39
TraesCS5B01G142600.1	Wheat	unclear	43.08	38.97
TraesCS1B01G030400.1	Wheat	vacuole	36.53	36.22

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0030246
InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922
InterPro:IPR008979	InterPro:Lectin_gal-bd_dom	PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742	ScanProsite:PS01182
PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF118	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1B01G278400	EnsemblPlants:TraesCS1B01G278400.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:-:486831480..486839621

Molecular Weight (calculated)

91467.7 Da

IEP (calculated)

6.762

GRAVY (calculated)

-0.218

Length

824 amino acids

Sequence
(BLAST)

001: MFTVGAVVAV ALIVLTAACT SAAAGDGRRV EEGGGDAARG EVTYDGRALV VKGTRRMLFS GEMHYTRSTP EMWPKLIANA RKGGLDVIQT YVFWNVHEPV
101: QGQYNFEGRY DLVKFIREIQ AQGLYVSLRI GPFIEAEWKY GGFPFWLHDV PNITFRTDNE PFKQHMQRFV TQIVNMMKQE GLYYPQGGPI IISQIENEYQ
201: MVEPAFGSGG PRYVRWAAEM AVGLQTGVPW MMCKQNDAPD PIINTCNGLI CGETFVGPNS PSKPALWTEN WTTRYPIYGN DTKLRSTEDI AFAVALFIAR
301: KKGSFVSYYM YHGGTNFGRF ASSYVTTSYY DGAPLDEYGL IWRPTWGHLR ELHAAVNLSS EPLLFGTYSN FSLGQEQEAH IFKTELKCAA FLVNFDKHQS
401: PTVVFRNTSF QLAPKSISIL SECRTVVFET AKVNAQYGSR TAKVVESLND IHTWKAFKEP IPEDISKAVY TGNQLFEHLS MTKDETDYLW YIVSYEYRPS
501: DDGQLVLLNV ESRAHVLHAF VNTEYIGSVH GSHDGPGNII LNMNISLKEG QNTISLLSVM VGSPDSGAHM ERRSFGIRKV SIQQGQQPLH LLNNELWGYQ
601: VGLYGEGKRI YTQEEASSVE WTEINNLTYH PLTWYKTTFA APVGNDAVAL NLTSMGKGEV WVNGESIGRY WVSFKAPSGQ PSQSLYHVPQ HFLKPTDNLL
701: VLVEEIGGNP LEITVNTVSI TTVCGNVNEL SSPALHTQGK DPEVRLRCQR GKHISAIEFA SYGNPAGDCT TFSTGSCHAA LSESVVKQAC IGKRGCSIPV
801: SPAKFGGDPC PGIQKSLLVV ASCR

Best Arabidopsis Sequence Match ( AT1G77410.1 )
(BLAST)

001: MTTFQYSLVF LVLMAVIVAG DVANVTYDGR SLIIDGEHKI LFSGSIHYTR STPQMWPSLI AKAKSGGIDV VDTYVFWNVH EPQQGQFDFS GSRDIVKFIK
101: EVKNHGLYVC LRIGPFIQGE WSYGGLPFWL HNVQGIVFRT DNEPFKYHMK RYAKMIVKLM KSENLYASQG GPIILSQIEN EYGMVGRAFR QEGKSYVKWT
201: AKLAVELDTG VPWVMCKQDD APDPLVNACN GRQCGETFKG PNSPNKPAIW TENWTSFYQT YGEEPLIRSA EDIAFHVALF IAKNGSFVNY YMYHGGTNFG
301: RNASQFVITS YYDQAPLDEY GLLRQPKWGH LKELHAAVKL CEEPLLSGLQ TTISLGKLQT AFVFGKKANL CAAILVNQDK CESTVQFRNS SYRLSPKSVS
401: VLPDCKNVAF NTAKVNAQYN TRTRKARQNL SSPQMWEEFT ETVPSFSETS IRSESLLEHM NTTQDTSDYL WQTTRFQQSE GAPSVLKVNH LGHALHAFVN
501: GRFIGSMHGT FKAHRFLLEK NMSLNNGTNN LALLSVMVGL PNSGAHLERR VVGSRSVKIW NGRYQLYFNN YSWGYQVGLK GEKFHVYTED GSAKVQWKQY
601: RDSKSQPLTW YKASFDTPEG EDPVALNLGS MGKGEAWVNG QSIGRYWVSF HTYKGNPSQI WYHIPRSFLK PNSNLLVILE EEREGNPLGI TIDTVSVTEV
701: CGHVSNTNPH PVISPRKKGL NRKNLTYRYD RKPKVQLQCP TGRKISKILF ASFGTPNGSC GSYSIGSCHS PNSLAVVQKA CLKKSRCSVP VWSKTFGGDS
801: CPHTVKSLLV RAQCS

Arabidopsis Description

BGAL16beta-galactosidase 16 [Source:TAIR;Acc:AT1G77410]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.