Factsheet for VIT_18s0001g02230.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

nucleus 2
golgi 6
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g02220.t01	Wine grape	vacuole	71.01	71.71
VIT_07s0031g02590.t01	Wine grape	extracellular, golgi, vacuole	39.59	70.5
Solyc11g018500.1.1	Tomato	cytosol, golgi, vacuole	56.52	66.76
Solyc11g018490.1.1	Tomato	cytosol	59.81	65.03
KRH53267	Soybean	golgi, vacuole	55.18	64.99
KRH64633	Soybean	vacuole	54.93	64.8
PGSC0003DMT400023851	Potato	nucleus, peroxisome, vacuole	56.64	64.23
PGSC0003DMT400023852	Potato	extracellular	48.23	62.96
AT1G77410.3	Thale cress	golgi, vacuole	61.14	61.22
GSMUA_Achr11P...	Banana	golgi, vacuole	58.95	59.24
Os05t0428100-00	Rice	golgi, vacuole	55.05	55.73
TraesCS1B01G278400.1	Wheat	plastid	55.05	54.85
HORVU3Hr1G081980.9	Barley	cytosol, vacuole	50.3	54.77
TraesCS1D01G267600.2	Wheat	endoplasmic reticulum, extracellular, vacuole	54.32	54.39
TraesCS1A01G267700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	54.57	54.37
Zm00001d010212_P002	Maize	endoplasmic reticulum, extracellular, golgi	54.2	54.27
HORVU1Hr1G065290.7	Barley	vacuole	54.08	54.01
KXG22057	Sorghum	vacuole	54.57	53.59
TraesCS3A01G386100.3	Wheat	vacuole	53.59	52.95
Zm00001d042656_P001	Maize	golgi, vacuole	45.19	52.85
TraesCS3B01G418200.1	Wheat	vacuole	53.35	52.58
TraesCS3D01G379100.3	Wheat	vacuole	53.59	51.83
VIT_03s0038g02360.t01	Wine grape	extracellular, golgi	49.09	48.38
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	48.84	47.68
VIT_04s0023g02690.t01	Wine grape	extracellular, golgi	48.11	46.75
VIT_18s0001g13230.t01	Wine grape	extracellular, golgi	48.23	46.37
VIT_06s0004g03020.t01	Wine grape	extracellular	47.75	46.34
VIT_03s0038g00150.t01	Wine grape	vacuole	48.6	46.23
VIT_11s0016g02200.t01	Wine grape	vacuole	47.02	46.17
VIT_07s0031g02480.t01	Wine grape	extracellular	46.77	45.34
VIT_11s0016g00680.t01	Wine grape	vacuole	43.85	43.11
VIT_08s0007g04270.t01	Wine grape	extracellular, golgi, vacuole	43.36	42.74

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	EntrezGene:100262510
wikigene:100262510	Gene3D:2.60.120.260	Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	ProteinID:CBI18991
ProteinID:CBI18991.3	UniProt:E0CR37	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0004565	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	GO:GO:0030246	GO:GO:0030312	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS
InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979	EntrezGene:LOC100262510	wikigene:LOC100262510
InterPro:Lectin_gal-bd_dom	PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228
PANTHER:PTHR23421	PANTHER:PTHR23421:SF119	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-TM	TMHMM:TMhelix
UniParc:UPI0001BE12B2	ArrayExpress:VIT_18s0001g02230	EnsemblPlantsGene:VIT_18s0001g02230	EnsemblPlants:VIT_18s0001g02230.t01	RefSeq:XP_002284529	RefSeq:XP_002284529.1
RefSeq:XP_019072164.1	SEG:seg	:	:	:	:

Description

Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:E0CR37]

Coordinates

chr18:-:2604468..2613076

Molecular Weight (calculated)

90875.1 Da

IEP (calculated)

8.473

GRAVY (calculated)

-0.303

Length

821 amino acids

Sequence
(BLAST)

001: MPRKEALEMR SRLLLWFAVL SAAVAVVCGG SVTYDGRSLI INGQRRLLFS GSIHYPRSTP EMWPSLISKA KEGGIDVIET YAFWNQHEPK QGQYDFSGRL
101: DIVKFFKEVQ AQGLYACLRI GPFIESEWNY GGLPFWLHDV PGIIYRSDNE PFKFYMQNFT TKIVNLMKSE NLYASQGGPI ILSQIENEYK NVEAAFHEKG
201: PPYVRWAAKM AVDLQTGVPW VMCKQDDAPD PVINACNGMK CGETFAGPNK PNKPAIWTEN WTSVYEVYGE DKRGRAAEDL AFQVALFIAK KNGSFINYYM
301: YHGGTNFGRT SSSYVLTAYY DQAPLDEYGL IRQPKWGHLK ELHAVIKLCS DTLLHGVQYN YSLGQLQEAY LFKRPSGQCA AFLVNNDKRR NVTVLFQNTN
401: YELAANSISI LPDCKKIAFN TAKVSTQFNT RSVQTRATFG STKQWSEYRE GIPSFGGTPL KASMLLEHMG TTKDASDYLW YTLRFIQNSS NAQPVLRVDS
501: LAHVLHAFVN GKYIASAHGS HQNGSFSLVN KVPLNSGLNR ISLLSVMVGL PDAGPYLEHK VAGIRRVEIQ DGGDSKDFSK HPWGYQVGLM GEKSQIYTSP
601: GSQKVQWHGL GSHGRGPLTW YKTLFDAPPG NDPVVLFFGS MGKGEAWVNG QSIGRYWVSY LTPSGEPSQT WYNVPRAFLN PKGNLLVVQE EESGDPLKIS
701: IGTVSVTNVC GHVTDSHPPP IISWTTSDDG NESHHGKIPK VQLRCPPSSN ISKITFASFG TPVGGCESYA IGSCHSPNSL AVAEKACLGK NMCSIPHSLK
801: SFGDDPCPGT PKALLVAAQC K

Best Arabidopsis Sequence Match ( AT1G77410.1 )
(BLAST)

001: MTTFQYSLVF LVLMAVIVAG DVANVTYDGR SLIIDGEHKI LFSGSIHYTR STPQMWPSLI AKAKSGGIDV VDTYVFWNVH EPQQGQFDFS GSRDIVKFIK
101: EVKNHGLYVC LRIGPFIQGE WSYGGLPFWL HNVQGIVFRT DNEPFKYHMK RYAKMIVKLM KSENLYASQG GPIILSQIEN EYGMVGRAFR QEGKSYVKWT
201: AKLAVELDTG VPWVMCKQDD APDPLVNACN GRQCGETFKG PNSPNKPAIW TENWTSFYQT YGEEPLIRSA EDIAFHVALF IAKNGSFVNY YMYHGGTNFG
301: RNASQFVITS YYDQAPLDEY GLLRQPKWGH LKELHAAVKL CEEPLLSGLQ TTISLGKLQT AFVFGKKANL CAAILVNQDK CESTVQFRNS SYRLSPKSVS
401: VLPDCKNVAF NTAKVNAQYN TRTRKARQNL SSPQMWEEFT ETVPSFSETS IRSESLLEHM NTTQDTSDYL WQTTRFQQSE GAPSVLKVNH LGHALHAFVN
501: GRFIGSMHGT FKAHRFLLEK NMSLNNGTNN LALLSVMVGL PNSGAHLERR VVGSRSVKIW NGRYQLYFNN YSWGYQVGLK GEKFHVYTED GSAKVQWKQY
601: RDSKSQPLTW YKASFDTPEG EDPVALNLGS MGKGEAWVNG QSIGRYWVSF HTYKGNPSQI WYHIPRSFLK PNSNLLVILE EEREGNPLGI TIDTVSVTEV
701: CGHVSNTNPH PVISPRKKGL NRKNLTYRYD RKPKVQLQCP TGRKISKILF ASFGTPNGSC GSYSIGSCHS PNSLAVVQKA CLKKSRCSVP VWSKTFGGDS
801: CPHTVKSLLV RAQCS

Arabidopsis Description

BGAL16beta-galactosidase 16 [Source:TAIR;Acc:AT1G77410]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.