Factsheet for Solyc11g018500.1.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole, cytosol

Predictor Summary:

nucleus 1
golgi 3
vacuole 2
extracellular 2
endoplasmic reticulum 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	vacuole
Plant-mPloc:	extracellular
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023852	Potato	extracellular	83.31	92.05
Solyc11g018490.1.1	Tomato	cytosol	73.67	67.81
KRH64633	Soybean	vacuole	63.6	63.51
KRH53267	Soybean	golgi, vacuole	63.6	63.41
VIT_18s0001g02220.t01	Wine grape	vacuole	66.91	57.2
VIT_18s0001g02230.t01	Wine grape	golgi, vacuole	66.76	56.52
AT1G77410.3	Thale cress	golgi, vacuole	63.74	54.02
Os05t0428100-00	Rice	golgi, vacuole	58.56	50.19
GSMUA_Achr11P...	Banana	golgi, vacuole	58.42	49.69
Solyc01g110000.2.1	Tomato	nucleus	51.51	49.24
Solyc12g008840.1.1	Tomato	extracellular	50.94	48.9
TraesCS1A01G267700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	57.84	48.79
TraesCS1B01G278400.1	Wheat	plastid	57.7	48.66
Zm00001d010212_P002	Maize	endoplasmic reticulum, extracellular, golgi	57.41	48.66
TraesCS1D01G267600.2	Wheat	endoplasmic reticulum, extracellular, vacuole	57.12	48.41
HORVU1Hr1G065290.7	Barley	vacuole	56.98	48.18
KXG22057	Sorghum	vacuole	57.84	48.09
HORVU3Hr1G081980.9	Barley	cytosol, vacuole	51.94	47.88
Solyc04g080840.1.1	Tomato	extracellular, golgi	49.06	46.39
TraesCS3A01G386100.3	Wheat	vacuole	55.4	46.33
TraesCS3B01G418200.1	Wheat	vacuole	54.82	45.74
TraesCS3D01G379100.3	Wheat	vacuole	55.25	45.23
Zm00001d042656_P001	Maize	golgi, vacuole	45.61	45.16
Solyc03g121540.2.1	Tomato	nucleus	51.37	42.6
Solyc12g044880.1.1	Tomato	golgi, vacuole	50.79	42.28
Solyc02g084720.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	51.22	42.13
Solyc06g062580.2.1	Tomato	nucleus	49.78	41.14
Solyc01g111540.2.1	Tomato	unclear	48.92	40.91
Solyc02g078950.2.1	Tomato	vacuole	49.21	40.52
Solyc10g055470.1.1	Tomato	vacuole	48.06	40.29
Solyc11g069270.1.1	Tomato	extracellular	49.21	40.14
Solyc03g019890.2.1	Tomato	nucleus	49.64	39.66
Solyc07g042220.1.1	Tomato	unclear	45.18	38.39
Solyc09g092160.2.1	Tomato	extracellular	47.63	37.11

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
MapMan:21.3.2.2.2	Gene3D:3.20.20.80	InterPro:BetaGal_jelly_roll_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0004565	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
GO:GO:0030312	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF
InterPro:IPR008979	UniProt:K4D6Q4	PFAM:PF01301	PFAM:PF13364	PRINTS:PR00742	ScanProsite:PS01182
PANTHER:PTHR23421	PANTHER:PTHR23421:SF118	SUPFAM:SSF49785	SUPFAM:SSF51445	EnsemblPlantsGene:Solyc11g018500.1	EnsemblPlants:Solyc11g018500.1.1
UniParc:UPI000276AA61	:	:	:	:	:

Description

Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:K4D6Q4]

Coordinates

chr11:+:8620702..8629947

Molecular Weight (calculated)

77695.9 Da

IEP (calculated)

4.985

GRAVY (calculated)

-0.230

Length

695 amino acids

Sequence
(BLAST)

001: MVVMMVVVST GRANVSYDGR SLMIDGERKM LFSGSIHYPR STPDMWPSLI SKAKEGGIDV IETYVFWNLH EPQLGQYDFS GRRDIVAFIK QIQAQGLYAC
101: LRIGPYIEGE WTYGGFPFWL HDVPGVVFRS NNEPFKFYMQ NFTTKIVNLM KSEGLYASQG GPIILSQIEN EYQNVEKAFG EDGPPYVSWA AEMAVGLQTG
201: VPWCMCKQDD APDPVINACN GLRCGETFTG PNSPNKPSIW TENWTSFYQV YGQNATLRSA EDMAYHVALF IARKNGTFIN YYMYHGGTNF GRTAAEYMIT
301: SYYDQAPLDE YGLIRQPKWG HLKELHEAVK LCSETILSVF PSMQSLGEQQ EAYVFSGDSG ACAAFLVNMD NTKSVVQFQN SSYELPRKSI SILPDCKTAA
401: FNTAKVSTQF NTRITIPAIK FDAAEKWEQF EEVIPQFDAI TLRSDVLLEH MNTTKDVSDY LWYTFSIQQD SMEQQSTLSV KSLGHVLHAF VNGEHVGSLH
501: GRFRNTAFTL EGAVSLNQGT NNISLLSATV GLPDSGSFLE RRALGVESVI IEDSKEAKNI TNLSWGYQVG LLGEKLQIYS LEESKSAYWS SLGSSQPLTW
601: YKSVFDAPKG DDPVALNLGS MGKGEAWVNG QSIGRYWVSF RTLAGIPSQT WYNVPRSFLQ PGDNLLVLFE EETGNPLDIT IDTISVTKPS LRKLV

Best Arabidopsis Sequence Match ( AT1G77410.1 )
(BLAST)

001: MTTFQYSLVF LVLMAVIVAG DVANVTYDGR SLIIDGEHKI LFSGSIHYTR STPQMWPSLI AKAKSGGIDV VDTYVFWNVH EPQQGQFDFS GSRDIVKFIK
101: EVKNHGLYVC LRIGPFIQGE WSYGGLPFWL HNVQGIVFRT DNEPFKYHMK RYAKMIVKLM KSENLYASQG GPIILSQIEN EYGMVGRAFR QEGKSYVKWT
201: AKLAVELDTG VPWVMCKQDD APDPLVNACN GRQCGETFKG PNSPNKPAIW TENWTSFYQT YGEEPLIRSA EDIAFHVALF IAKNGSFVNY YMYHGGTNFG
301: RNASQFVITS YYDQAPLDEY GLLRQPKWGH LKELHAAVKL CEEPLLSGLQ TTISLGKLQT AFVFGKKANL CAAILVNQDK CESTVQFRNS SYRLSPKSVS
401: VLPDCKNVAF NTAKVNAQYN TRTRKARQNL SSPQMWEEFT ETVPSFSETS IRSESLLEHM NTTQDTSDYL WQTTRFQQSE GAPSVLKVNH LGHALHAFVN
501: GRFIGSMHGT FKAHRFLLEK NMSLNNGTNN LALLSVMVGL PNSGAHLERR VVGSRSVKIW NGRYQLYFNN YSWGYQVGLK GEKFHVYTED GSAKVQWKQY
601: RDSKSQPLTW YKASFDTPEG EDPVALNLGS MGKGEAWVNG QSIGRYWVSF HTYKGNPSQI WYHIPRSFLK PNSNLLVILE EEREGNPLGI TIDTVSVTEV
701: CGHVSNTNPH PVISPRKKGL NRKNLTYRYD RKPKVQLQCP TGRKISKILF ASFGTPNGSC GSYSIGSCHS PNSLAVVQKA CLKKSRCSVP VWSKTFGGDS
801: CPHTVKSLLV RAQCS

Arabidopsis Description

BGAL16beta-galactosidase 16 [Source:TAIR;Acc:AT1G77410]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.