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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: vacuole

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 7
  • plasma membrane 5
  • golgi 7
Predictors GFP MS/MS Papers
Winner Takes All:vacuole
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:golgi
iPSORT:secretory
MultiLoc:vacuole
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400031178 Potato vacuole 93.24 93.24
Solyc01g111540.2.1 Tomato unclear 79.13 78.94
VIT_03s0038g02360.t01 Wine grape extracellular, golgi 64.29 63.99
KRH29286 Soybean extracellular, golgi, vacuole 60.8 59.86
KRH24309 Soybean golgi, vacuole 60.31 59.31
KRH60700 Soybean extracellular, golgi, vacuole 58.38 57.35
GSMUA_Achr1P14790_001 Banana vacuole 56.57 56.85
GSMUA_AchrUn_... Banana extracellular, vacuole 55.61 56.5
GSMUA_Achr1P26480_001 Banana vacuole 54.76 55.84
AT2G16730.1 Thale cress extracellular, golgi, vacuole 57.06 55.78
CDX69103 Canola vacuole 55.61 54.62
Bra011577.1-P Field mustard vacuole 55.61 54.56
CDX75479 Canola vacuole 55.61 54.56
CDY40650 Canola vacuole 55.13 54.15
AT4G35010.1 Thale cress vacuole 55.13 54.08
CDX72512 Canola vacuole 55.01 54.03
Bra017687.1-P Field mustard vacuole 55.01 54.03
CDY31414 Canola cytosol, golgi, mitochondrion, peroxisome 50.78 53.97
Bra013052.1-P Field mustard golgi, vacuole 54.89 53.78
GSMUA_Achr4P05130_001 Banana golgi, plastid, vacuole 54.4 53.75
Bra001991.1-P Field mustard golgi, vacuole 52.23 53.33
TraesCS7D01G272600.1 Wheat golgi, vacuole 53.08 52.38
CDX72747 Canola vacuole 55.97 52.37
CDY70118 Canola cytosol 37.52 52.36
HORVU7Hr1G057460.1 Barley golgi 52.35 52.16
KXG25431 Sorghum golgi 52.35 51.18
Os09t0539200-01 Rice vacuole 27.5 51.12
TraesCS7A01G272400.2 Wheat vacuole 52.47 51.0
Zm00001d053225_P005 Maize golgi, vacuole 51.87 50.83
TraesCS7B01G169700.1 Wheat vacuole 52.96 50.4
Os08t0549200-01 Rice plasma membrane 51.27 50.12
Zm00001d032022_P003 Maize golgi, vacuole 51.39 50.12
Bra033571.1-P Field mustard cytosol 55.97 48.54
CDY22419 Canola cytosol 55.97 48.54
TraesCS5A01G330900.1 Wheat endoplasmic reticulum, vacuole 48.85 48.27
KXG36088 Sorghum endoplasmic reticulum, golgi, vacuole 48.73 48.27
TraesCS5B01G331300.1 Wheat golgi, vacuole 48.73 48.15
Solyc11g018500.1.1 Tomato cytosol, golgi, vacuole 40.29 48.06
TraesCS5D01G336700.2 Wheat vacuole 47.29 46.72
HORVU7Hr1G009630.2 Barley cytosol 38.72 46.59
Solyc11g018490.1.1 Tomato cytosol 42.22 46.36
CDY02241 Canola golgi, vacuole 54.89 46.01
Solyc12g008840.1.1 Tomato extracellular 39.81 45.58
Solyc12g044880.1.1 Tomato golgi, vacuole 44.27 43.95
Zm00001d006243_P005 Maize endoplasmic reticulum, golgi, vacuole 45.96 43.74
Solyc01g110000.2.1 Tomato nucleus 38.36 43.74
Solyc03g121540.2.1 Tomato nucleus 44.03 43.56
Solyc06g062580.2.1 Tomato nucleus 43.79 43.16
AT4G38590.2 Thale cress golgi, vacuole 54.4 42.87
Solyc04g080840.1.1 Tomato extracellular, golgi 37.88 42.72
Zm00001d022621_P005 Maize vacuole 45.11 41.83
Solyc02g078950.2.1 Tomato vacuole 42.58 41.82
CDX89744 Canola vacuole 54.64 41.71
Solyc02g084720.2.1 Tomato endoplasmic reticulum, golgi, vacuole 42.34 41.54
Solyc07g042220.1.1 Tomato unclear 40.17 40.71
Solyc11g069270.1.1 Tomato extracellular 41.25 40.14
Solyc03g019890.2.1 Tomato nucleus 41.98 40.0
Solyc09g092160.2.1 Tomato extracellular 41.62 38.68
Protein Annotations
KEGG:00052+3.2.1.23KEGG:00511+3.2.1.23KEGG:00531+3.2.1.23KEGG:00600+3.2.1.23KEGG:00604+3.2.1.23Gene3D:2.60.120.260
Gene3D:2.60.120.740MapMan:21.3.2.2.2Gene3D:3.20.20.80ncoils:CoilGO:GO:0003674GO:GO:0003824
GO:GO:0004553GO:GO:0004565GO:GO:0005488GO:GO:0005575GO:GO:0005618GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0016787GO:GO:0016798GO:GO:0030246GO:GO:0030312InterPro:Galactose-bd-like_sfInterPro:Gly_Hdrlase_35_cat
InterPro:Glyco_hydro_35_CSInterPro:Glycoside_Hdrlase_35InterPro:Glycoside_hydrolase_SFInterPro:IPR000922InterPro:IPR008979UniProt:K4D1D7
InterPro:Lectin_gal-bd_domPFAM:PF01301PFAM:PF02140PRINTS:PR00742ScanProsite:PS01182PFscan:PS50228
PANTHER:PTHR23421PANTHER:PTHR23421:SF52SUPFAM:SSF49785SUPFAM:SSF51445SignalP:SignalP-noTMEnsemblPlantsGene:Solyc10g055470.1
EnsemblPlants:Solyc10g055470.1.1UniParc:UPI00027695DASEG:seg:::
Description
Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:K4D1D7]
Coordinates
chr10:-:56817447..56821274
Molecular Weight (calculated)
93611.7 Da
IEP (calculated)
8.173
GRAVY (calculated)
-0.409
Length
829 amino acids
Sequence
(BLAST)
001: MTISNRLLLL FLFSLMVTCT FAEKPKGVSY DGRSMIVNGE RELLFSGSIH YPRMPPEMWP DVIRKAKEGG LNLIQTYVFW NIHEPVQGQF NFEGNYDVVK
101: FIKEIARQGL YVTLRIGPYI EAEWNQGGFP YWLREVPNIT FRSYNEPFIY HMKKYSEMVI DLMKKEQLFA PQGGPIIMAQ IENEYNNVQL AYRENGLKYI
201: QWAANMASSL YNGVPWIMCK QRDAPPHIIN TCNGRHCGDT FTGPNGPNKP SLWTENWTAQ YRTFGDPPSQ RAAEDIAFAV ARFFAKNGTL TNYYMYYGGT
301: NYGRTGSSFV TTRYYDEAPL DEFGLYREPK WSHLRDLHRA LRLSRRALLW GTPTVQKISA DLEITVYEKQ GTDCTAFLTN NHTTNPATIK FRGKDYYLPE
401: KSVSILPDCK TVVYNTQTIV SQHNSRNFVA SEKAKGLKWE KYQEKVPTSS DLPLKNREPL ELYSLTKDTS DYAWYSTSVT FERHDLPMRP DILPVLQIAS
501: MGHALVAFVN GEYVGFGHGN NIEKGFVFQK PVVLKPGTNT ISILAETVGF PNSGAYMEKR FAGPRAITIQ GLMAGTLDIT QNNWGHEVGV FGEKEKLFTE
601: EGAKKVKWTP VSGPTNGATT WYKTTFDAPE GNNPLAVKMD KMQKGMMWVN GNSLGRYWSS FLSPLGQPTQ FEYHIPRAFV KPTGNVLVVF EETGGNPADI
701: EIQTVNRDTI CSIITEYHPP NVKSWERSGT NFVAIVEDLK TGAHLTCPDN KIIEKVEFAS YGNPDGACGN LAVGTCNSAK SMAVAQEKCL GKNSCTIPIE
801: REIYDEPSKD PCPNIFKTLA VQMKCANKK
Best Arabidopsis Sequence Match ( AT2G16730.1 )
(BLAST)
001: MKIHSSDHSW LLLAVLVILL SFSGALSSDD KEKKTKSVDK KKEVTYDGTS LIINGNRELL YSGSIHYPRS TPEMWPNIIK RAKQGGLNTI QTYVFWNVHE
101: PEQGKFNFSG RADLVKFIKL IEKNGLYVTL RLGPFIQAEW THGGLPYWLR EVPGIFFRTD NEPFKEHTER YVKVVLDMMK EEKLFASQGG PIILGQIENE
201: YSAVQRAYKE DGLNYIKWAS KLVHSMDLGI PWVMCKQNDA PDPMINACNG RHCGDTFPGP NKDNKPSLWT ENWTTQFRVF GDPPAQRSVE DIAYSVARFF
301: SKNGTHVNYY MYHGGTNFGR TSAHYVTTRY YDDAPLDEFG LEREPKYGHL KHLHNALNLC KKALLWGQPR VEKPSNETEI RYYEQPGTKV CAAFLANNNT
401: EAAEKIKFRG KEYLIPHRSI SILPDCKTVV YNTGEIISHH TSRNFMKSKK ANKNFDFKVF TESVPSKIKG DSFIPVELYG LTKDESDYGW YTTSFKIDDN
501: DLSKKKGGKP NLRIASLGHA LHVWLNGEYL GNGHGSHEEK SFVFQKPVTL KEGENHLTML GVLTGFPDSG SYMEHRYTGP RSVSILGLGS GTLDLTEENK
601: WGNKVGMEGE RLGIHAEEGL KKVKWEKASG KEPGMTWYQT YFDAPESQSA AAIRMNGMGK GLIWVNGEGV GRYWMSFLSP LGQPTQIEYH IPRSFLKPKK
701: NLLVIFEEEP NVKPELIDFV IVNRDTVCSY IGENYTPSVR HWTRKNDQVQ AITDDVHLTA NLKCSGTKKI SAVEFASFGN PNGTCGNFTL GSCNAPVSKK
801: VVEKYCLGKA ECVIPVNKST FEQDKKDSCP KVEKKLAVQV KCGRDKKN
Arabidopsis Description
BGAL13Beta-galactosidase 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU9]
SUBAcon: [golgi,extracellular,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.