Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 7
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g008430.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13750.1 | Solyc04g008430.1.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012359 | Potato | golgi, vacuole | 98.1 | 98.21 |
| Solyc03g121540.2.1 | Tomato | nucleus | 85.26 | 85.56 |
| Solyc12g044880.1.1 | Tomato | golgi, vacuole | 81.69 | 82.28 |
| VIT_09s0002g02120.t01 | Wine grape | golgi, vacuole | 78.12 | 78.12 |
| KRH10007 | Soybean | nucleus | 77.65 | 77.74 |
| KRH23324 | Soybean | vacuole | 77.05 | 77.05 |
| CDX97513 | Canola | golgi, vacuole | 76.34 | 76.43 |
| Bra027403.1-P | Field mustard | golgi, vacuole | 76.22 | 76.4 |
| CDY51738 | Canola | golgi, vacuole | 76.1 | 76.28 |
| KRH44153 | Soybean | nucleus | 76.46 | 76.28 |
| AT3G13750.1 | Thale cress | golgi, vacuole | 76.81 | 76.27 |
| CDY23637 | Canola | golgi, vacuole | 75.86 | 76.04 |
| CDY37486 | Canola | golgi, vacuole | 75.74 | 75.92 |
| KRH47126 | Soybean | nucleus | 75.98 | 75.62 |
| Bra021506.1-P | Field mustard | vacuole | 76.1 | 74.33 |
| Solyc12g008840.1.1 | Tomato | extracellular | 60.88 | 70.72 |
| GSMUA_Achr7P08970_001 | Banana | vacuole | 61.36 | 70.68 |
| GSMUA_Achr6P35850_001 | Banana | golgi, vacuole | 68.73 | 70.15 |
| OQU87043 | Sorghum | golgi, vacuole | 68.73 | 69.89 |
| GSMUA_Achr6P00880_001 | Banana | golgi, vacuole | 60.88 | 69.75 |
| GSMUA_Achr7P08950_001 | Banana | golgi, vacuole | 60.88 | 69.57 |
| Os01t0580200-01 | Rice | golgi, vacuole | 68.37 | 69.53 |
| Zm00001d044290_P005 | Maize | golgi, vacuole | 68.49 | 69.4 |
| GSMUA_Achr7P08960_001 | Banana | endoplasmic reticulum, golgi, vacuole | 60.52 | 69.16 |
| TraesCS3D01G211500.2 | Wheat | golgi, vacuole | 68.49 | 68.98 |
| TraesCS3A01G208600.1 | Wheat | plastid | 68.37 | 68.86 |
| GSMUA_Achr7P08940_001 | Banana | vacuole | 59.93 | 68.85 |
| HORVU3Hr1G050450.12 | Barley | golgi, vacuole | 68.01 | 68.83 |
| TraesCS3B01G235100.1 | Wheat | golgi, vacuole | 68.37 | 68.7 |
| Solyc01g110000.2.1 | Tomato | nucleus | 57.55 | 66.58 |
| Os02t0219200-01 | Rice | peroxisome, vacuole | 39.24 | 66.0 |
| TraesCS7B01G264200.1 | Wheat | plasma membrane, vacuole | 56.24 | 65.88 |
| Os06t0573600-01 | Rice | plasma membrane, vacuole | 56.0 | 65.87 |
| TraesCS7D01G359500.1 | Wheat | golgi | 56.12 | 65.83 |
| EER88554 | Sorghum | golgi, vacuole | 56.6 | 65.66 |
| TraesCS7A01G363600.1 | Wheat | plasma membrane, vacuole | 56.0 | 65.6 |
| TraesCS6A01G185400.1 | Wheat | golgi, vacuole | 56.36 | 65.47 |
| Zm00001d046357_P001 | Maize | extracellular | 56.12 | 65.37 |
| TraesCS6B01G214100.1 | Wheat | golgi, vacuole | 56.24 | 65.24 |
| TraesCS6D01G172400.1 | Wheat | golgi, vacuole | 56.0 | 64.97 |
| Solyc04g080840.1.1 | Tomato | extracellular, golgi | 56.36 | 64.49 |
| EES06516 | Sorghum | mitochondrion, plastid | 56.6 | 64.32 |
| HORVU7Hr1G086690.2 | Barley | plasma membrane, vacuole | 56.0 | 63.05 |
| Solyc02g084720.2.1 | Tomato | endoplasmic reticulum, golgi, vacuole | 62.66 | 62.37 |
| HORVU6Hr1G039490.6 | Barley | plastid | 56.48 | 62.17 |
| GSMUA_Achr2P16780_001 | Banana | plastid | 60.29 | 60.29 |
| Zm00001d053585_P002 | Maize | plastid | 55.77 | 56.57 |
| Solyc11g069270.1.1 | Tomato | extracellular | 54.22 | 53.52 |
| Solyc02g078950.2.1 | Tomato | vacuole | 50.89 | 50.71 |
| Solyc11g018500.1.1 | Tomato | cytosol, golgi, vacuole | 41.14 | 49.78 |
| Solyc03g019890.2.1 | Tomato | nucleus | 51.13 | 49.43 |
| Solyc11g018490.1.1 | Tomato | cytosol | 43.28 | 48.21 |
| Solyc07g042220.1.1 | Tomato | unclear | 46.02 | 47.31 |
| Solyc09g092160.2.1 | Tomato | extracellular | 49.7 | 46.86 |
| Solyc10g055470.1.1 | Tomato | vacuole | 43.16 | 43.79 |
| Solyc01g111540.2.1 | Tomato | unclear | 42.45 | 42.96 |
Protein Annotations
| KEGG:00052+3.2.1.23 | KEGG:00511+3.2.1.23 | KEGG:00531+3.2.1.23 | KEGG:00600+3.2.1.23 | KEGG:00604+3.2.1.23 | Gene3D:2.60.120.260 |
| Gene3D:2.60.120.740 | MapMan:21.3.2.2.2 | Gene3D:3.20.20.80 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 |
| GO:GO:0004565 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 |
| GO:GO:0016798 | GO:GO:0030246 | GO:GO:0030312 | InterPro:Galactose-bd-like_sf | InterPro:Gly_Hdrlase_35_cat | InterPro:Glyco_hydro_35_CS |
| InterPro:Glycoside_Hdrlase_35 | InterPro:Glycoside_hydrolase_SF | InterPro:IPR000922 | InterPro:IPR008979 | UniProt:K4C6Y9 | InterPro:Lectin_gal-bd_dom |
| PFAM:PF01301 | PFAM:PF02140 | PRINTS:PR00742 | ScanProsite:PS01182 | PFscan:PS50228 | PANTHER:PTHR23421 |
| PANTHER:PTHR23421:SF74 | SUPFAM:SSF49785 | SUPFAM:SSF51445 | SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc06g062580.2 | EnsemblPlants:Solyc06g062580.2.1 |
| TMHMM:TMhelix | UniParc:UPI0002766943 | SEG:seg | : | : | : |
Description
Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:K4C6Y9]
Coordinates
chr6:+:39496785..39503153
Molecular Weight (calculated)
93481.4 Da
IEP (calculated)
8.019
GRAVY (calculated)
-0.213
Length
841 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFSRLVRLN VLLMLLALLG SWVLSGMCSV SYDRNAIIVN GQRRILVSGS IHYPRSTPEM WPDLIQKAKE GGVDVIQTYV FWNGHEPEQG KYYFEERYDL
101: VKFIKIVHQA GLYVHLRIGP YACAEWNFGG FPVWLKYVPG ISFRTDNAPF KSAMQKFTTK IVNMMKAERL YESQGGPIIL SQIENEYGPI EKRLGEPGKS
201: YSDWAAKMAL DLGTGVPWVM CKQDDAPDPV INTCNGFYCD YFSPNKAYKP KIWTEAWTAW FTEFGGPIPY RPVEDLAFGV AKFIQNGGSF INYYMYHGGT
301: NFGRTAGGPF IATSYDYDAP IDEFGLLRQP KWGHLKDLHR AIKLCEPALV SGDPTVTSLG NFQQAHVFTS KSGVCAAFLA NYNQHSFATV TFGNRHYNLP
401: PWSISILPDC KNTVYNTARV GAQSALMKMT PAVRGFSWQS YNDEPSSYED STFTVVGLLE QINTTRDVSD YLWYMTDVKI DPSEGFLRSG QWPWLKVSSA
501: GPALHVFVNG QLAGTVYGSL KSQKITFNKA VNLRAGINKI SLLSIAVGLP NIGPHFETWN TGVLGPVSLS GLNEGKRDLA WQKWSYKVGL KGEALNLHSL
601: SGSSSVEWVE GSLVTQRQPL TWFKTTFNAP AGNEPLALDM NTMGKGQMWI NGQSLGRYWP GYKSSGTCSA CNYAGYFNEN KCLSNCGEAS QRWYHVPRSW
701: LHPTGNLLVV FEEWGGDPNA ISLVKRELAS VCADINEWQP QLVNYKMQAS GEVDRPLRPK AHLRCATGQK ITSIKFASFG TPVGVCGSFS EGSCHAHHSY
801: DAFEKYCIGQ ESCSVPVTPE IFGGDPCPGV MKKLSVEALC S
101: VKFIKIVHQA GLYVHLRIGP YACAEWNFGG FPVWLKYVPG ISFRTDNAPF KSAMQKFTTK IVNMMKAERL YESQGGPIIL SQIENEYGPI EKRLGEPGKS
201: YSDWAAKMAL DLGTGVPWVM CKQDDAPDPV INTCNGFYCD YFSPNKAYKP KIWTEAWTAW FTEFGGPIPY RPVEDLAFGV AKFIQNGGSF INYYMYHGGT
301: NFGRTAGGPF IATSYDYDAP IDEFGLLRQP KWGHLKDLHR AIKLCEPALV SGDPTVTSLG NFQQAHVFTS KSGVCAAFLA NYNQHSFATV TFGNRHYNLP
401: PWSISILPDC KNTVYNTARV GAQSALMKMT PAVRGFSWQS YNDEPSSYED STFTVVGLLE QINTTRDVSD YLWYMTDVKI DPSEGFLRSG QWPWLKVSSA
501: GPALHVFVNG QLAGTVYGSL KSQKITFNKA VNLRAGINKI SLLSIAVGLP NIGPHFETWN TGVLGPVSLS GLNEGKRDLA WQKWSYKVGL KGEALNLHSL
601: SGSSSVEWVE GSLVTQRQPL TWFKTTFNAP AGNEPLALDM NTMGKGQMWI NGQSLGRYWP GYKSSGTCSA CNYAGYFNEN KCLSNCGEAS QRWYHVPRSW
701: LHPTGNLLVV FEEWGGDPNA ISLVKRELAS VCADINEWQP QLVNYKMQAS GEVDRPLRPK AHLRCATGQK ITSIKFASFG TPVGVCGSFS EGSCHAHHSY
801: DAFEKYCIGQ ESCSVPVTPE IFGGDPCPGV MKKLSVEALC S
001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA
Arabidopsis Description
BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]
SUBAcon: [golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.