Factsheet for TraesCS7D01G359500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13750.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT3G13750.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT3G13750.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G264200.1	Wheat	plasma membrane, vacuole	98.05	97.91
TraesCS7A01G363600.1	Wheat	plasma membrane, vacuole	96.79	96.66
HORVU7Hr1G086690.2	Barley	plasma membrane, vacuole	96.93	93.04
Zm00001d046357_P001	Maize	extracellular	88.15	87.53
EER88554	Sorghum	golgi, vacuole	88.15	87.17
Os06t0573600-01	Rice	plasma membrane, vacuole	84.38	84.62
TraesCS6D01G172400.1	Wheat	golgi, vacuole	81.17	80.28
GSMUA_Achr7P08970_001	Banana	vacuole	71.97	70.68
CDX88594	Canola	golgi, vacuole	31.66	69.85
GSMUA_Achr6P00880_001	Banana	golgi, vacuole	71.41	69.75
GSMUA_Achr7P08960_001	Banana	endoplasmic reticulum, golgi, vacuole	71.13	69.29
GSMUA_Achr7P08940_001	Banana	vacuole	70.43	68.99
GSMUA_Achr7P08950_001	Banana	golgi, vacuole	70.43	68.61
CDX76255	Canola	extracellular	12.13	67.97
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	61.92	66.27
CDX94367	Canola	mitochondrion	64.99	65.45
Solyc12g008840.1.1	Tomato	extracellular	65.55	64.92
Bra019644.1-P	Field mustard	golgi, plastid, vacuole	64.3	64.75
KRH37385	Soybean	nucleus	64.16	63.8
Bra013956.1-P	Field mustard	cytosol, mitochondrion, plastid, vacuole	64.85	63.52
KRH12385	Soybean	vacuole	63.88	63.52
CDX95380	Canola	vacuole	64.16	63.27
AT5G56870.1	Thale cress	vacuole	63.74	63.12
CDX89360	Canola	mitochondrion	61.23	62.8
CDX92753	Canola	golgi, vacuole	62.2	62.64
Bra019120.1-P	Field mustard	golgi, vacuole	62.06	62.5
CDX76254	Canola	golgi, nucleus, vacuole	51.19	62.41
CDY42755	Canola	vacuole	61.92	62.36
CDY11899	Canola	golgi, vacuole	62.48	62.05
Bra006850.1-P	Field mustard	golgi, vacuole	62.48	62.05
GSMUA_Achr2P16780_001	Banana	plastid	72.25	61.59
AT4G26140.7	Thale cress	vacuole	64.44	61.35
CDY32919	Canola	golgi, vacuole	60.95	60.53
Bra035634.1-P	Field mustard	golgi, vacuole	60.81	60.39
CDY20708	Canola	golgi, vacuole	60.67	60.25
TraesCS3D01G211500.2	Wheat	golgi, vacuole	68.06	58.44
CDY23637	Canola	golgi, vacuole	67.64	57.81
Bra027403.1-P	Field mustard	golgi, vacuole	67.64	57.81
KRH44153	Soybean	nucleus	67.92	57.77
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	67.64	57.67
CDX97513	Canola	golgi, vacuole	67.5	57.62
AT3G52840.2	Thale cress	golgi, vacuole	62.76	57.62
KRH47126	Soybean	nucleus	67.78	57.51
KRH10007	Soybean	nucleus	67.36	57.5
CDY51738	Canola	golgi, vacuole	66.95	57.21
AT3G13750.1	Thale cress	golgi, vacuole	67.5	57.14
KRH23324	Soybean	vacuole	66.95	57.07
CDY37486	Canola	golgi, vacuole	66.53	56.85
Solyc03g121540.2.1	Tomato	nucleus	66.39	56.8
PGSC0003DMT400006654	Potato	golgi, vacuole	66.25	56.68
CDY69471	Canola	cytosol	32.78	56.49
Solyc06g062580.2.1	Tomato	nucleus	65.83	56.12
PGSC0003DMT400083896	Potato	extracellular	65.27	56.05
PGSC0003DMT400012359	Potato	golgi, vacuole	65.55	55.95
Solyc12g044880.1.1	Tomato	golgi, vacuole	65.13	55.93
KRH19154	Soybean	golgi, mitochondrion, plastid, vacuole	65.41	55.9
KRH02714	Soybean	golgi, vacuole	65.41	55.9
Bra021506.1-P	Field mustard	vacuole	67.09	55.87
CDY70594	Canola	cytosol	32.36	55.77
VIT_11s0016g02200.t01	Wine grape	vacuole	64.44	55.26
TraesCS4D01G279400.4	Wheat	vacuole	62.48	52.83
TraesCS4D01G220800.2	Wheat	vacuole	55.09	45.56
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	27.48	44.07
TraesCS3D01G379200.1	Wheat	vacuole	51.46	43.72
TraesCS3D01G379300.2	Wheat	vacuole	51.33	43.6
TraesCS5D01G148400.1	Wheat	unclear	52.3	41.12
TraesCS1D01G024200.1	Wheat	vacuole	47.28	40.89
TraesCS1D01G267600.2	Wheat	endoplasmic reticulum, extracellular, vacuole	44.77	39.15
TraesCS7D01G272600.1	Wheat	golgi, vacuole	43.24	36.9
TraesCS3D01G379100.3	Wheat	vacuole	41.98	35.45
TraesCS5D01G336700.2	Wheat	vacuole	39.33	33.61

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
MapMan:21.3.2.2.2	Gene3D:3.20.20.80	InterPro:BetaGal_jelly_roll_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat
InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	PFAM:PF01301	PFAM:PF13364
PRINTS:PR00742	ScanProsite:PS01182	PANTHER:PTHR23421	PANTHER:PTHR23421:SF120	SUPFAM:SSF49785	SUPFAM:SSF51445
SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS7D01G359500	EnsemblPlants:TraesCS7D01G359500.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr7D:-:461800616..461804152

Molecular Weight (calculated)

78521.7 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.232

Length

717 amino acids

Sequence
(BLAST)

001: MPSGGLLLAL LVAAAFAAVA NAAVSYDHRA VVINGQRRIL MSGSIHYPRS TPEMWPDLIQ KAKDGGLDVI QTYVFWNGHE PARGQYHFAD RYDLVRFVKL
101: AKQAGLYVHL RIGPYVCAEW NFGGFPVWLK YVPGISFRTD NGPFKAEMQR FVEKIVSMMK SEGLFEWQGG PIILAQVENE YGPMESAMGA GAKPYANWAA
201: KMAVATDAGV PWVMCKQDDA PDPVINSCNG FYCDYFSPNS NSKPTMWTEA WTGWFTAFGG AVPHRPVEDM AFAVARFVQK GGSFVNYYMY HGGTNFDRTA
301: GGPFIATSYD YDAPIDEYGL IRQPKWGHLR DLHKAIKQAE PALVSGDPTV QRIGNYEKAY VFKSSTGACA AFLSNYHTSA AARVVYNGRR YDLPAWSISI
401: LPDCKTAVFN TATVKEPSLP AKMNPAGGLA WQSYSEDTNA LDSSAFTKDG LVEQLSMTWD KSDYLWYTTY VNIDSSEQFL KSGQWPQLTI NSAGHTVQVF
501: VNGQSFGVAY GGYNSPKLTY SKPVKMWQGS NKISILSSAM GLPNQGTHYE AWNVGVLGPV TLSGLNQGKR DLSNQKWTYQ IGLKGESLGV NSISGSSSVE
601: WSSATGAQPL TWHKAYFAAP AGSAPVALDM GSMGKGQIWV NGNNAGRYWS YRASGSCGAC SYAGTFSEAK CQTNCGDISQ RWYHVPRSWL KPSGNLLVVL
701: EEFGGDLSGV TLMTRTT

Best Arabidopsis Sequence Match ( AT3G13750.1 )
(BLAST)

001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA

Arabidopsis Description

BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.