Subcellular Localization
min:
: max
Winner_takes_all: golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 7
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400075691 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13750.1 | PGSC0003DMT400075691 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g121540.2.1 | Tomato | nucleus | 98.57 | 98.57 |
| PGSC0003DMT400012359 | Potato | golgi, vacuole | 85.56 | 85.36 |
| PGSC0003DMT400083896 | Potato | extracellular | 81.62 | 81.92 |
| VIT_09s0002g02120.t01 | Wine grape | golgi, vacuole | 80.67 | 80.38 |
| KRH10007 | Soybean | nucleus | 78.64 | 78.45 |
| KRH23324 | Soybean | vacuole | 78.16 | 77.88 |
| KRH44153 | Soybean | nucleus | 78.28 | 77.82 |
| KRH47126 | Soybean | nucleus | 77.92 | 77.28 |
| CDY51738 | Canola | golgi, vacuole | 77.21 | 77.12 |
| Bra027403.1-P | Field mustard | golgi, vacuole | 77.21 | 77.12 |
| CDX97513 | Canola | golgi, vacuole | 77.09 | 76.9 |
| CDY37486 | Canola | golgi, vacuole | 76.97 | 76.88 |
| CDY23637 | Canola | golgi, vacuole | 76.85 | 76.76 |
| AT3G13750.1 | Thale cress | golgi, vacuole | 77.45 | 76.62 |
| Bra021506.1-P | Field mustard | vacuole | 77.21 | 75.15 |
| GSMUA_Achr7P08970_001 | Banana | vacuole | 62.29 | 71.51 |
| PGSC0003DMT400000899 | Potato | nucleus, peroxisome, vacuole | 56.56 | 70.75 |
| OQU87043 | Sorghum | golgi, vacuole | 69.57 | 70.5 |
| GSMUA_Achr6P35850_001 | Banana | golgi, vacuole | 69.21 | 70.39 |
| GSMUA_Achr7P08960_001 | Banana | endoplasmic reticulum, golgi, vacuole | 61.69 | 70.24 |
| GSMUA_Achr7P08950_001 | Banana | golgi, vacuole | 61.69 | 70.24 |
| GSMUA_Achr6P00880_001 | Banana | golgi, vacuole | 61.34 | 70.03 |
| Os01t0580200-01 | Rice | golgi, vacuole | 69.09 | 70.01 |
| Zm00001d044290_P005 | Maize | golgi, vacuole | 69.33 | 70.0 |
| TraesCS3D01G211500.2 | Wheat | golgi, vacuole | 69.45 | 69.7 |
| TraesCS3A01G208600.1 | Wheat | plastid | 69.21 | 69.46 |
| HORVU3Hr1G050450.12 | Barley | golgi, vacuole | 68.85 | 69.43 |
| GSMUA_Achr7P08940_001 | Banana | vacuole | 60.5 | 69.26 |
| TraesCS3B01G235100.1 | Wheat | golgi, vacuole | 69.09 | 69.18 |
| Os06t0573600-01 | Rice | plasma membrane, vacuole | 56.68 | 66.43 |
| TraesCS7D01G359500.1 | Wheat | golgi | 56.68 | 66.25 |
| TraesCS7B01G264200.1 | Wheat | plasma membrane, vacuole | 56.56 | 66.02 |
| Zm00001d046357_P001 | Maize | extracellular | 56.68 | 65.79 |
| PGSC0003DMT400079498 | Potato | vacuole | 57.04 | 65.75 |
| EER88554 | Sorghum | golgi, vacuole | 56.8 | 65.66 |
| TraesCS7A01G363600.1 | Wheat | plasma membrane, vacuole | 56.21 | 65.6 |
| PGSC0003DMT400011458 | Potato | cytosol, nucleus, peroxisome | 34.96 | 65.55 |
| TraesCS6A01G185400.1 | Wheat | golgi, vacuole | 56.56 | 65.47 |
| TraesCS6B01G214100.1 | Wheat | golgi, vacuole | 56.44 | 65.24 |
| TraesCS6D01G172400.1 | Wheat | golgi, vacuole | 56.09 | 64.83 |
| PGSC0003DMT400009496 | Potato | nucleus, peroxisome, vacuole | 41.53 | 64.33 |
| Os02t0219200-01 | Rice | peroxisome, vacuole | 38.31 | 64.2 |
| EES06516 | Sorghum | mitochondrion, plastid | 56.56 | 64.05 |
| HORVU7Hr1G086690.2 | Barley | plasma membrane, vacuole | 56.21 | 63.05 |
| HORVU6Hr1G039490.6 | Barley | plastid | 56.44 | 61.91 |
| PGSC0003DMT400009096 | Potato | endoplasmic reticulum, golgi, vacuole | 62.29 | 61.78 |
| GSMUA_Achr2P16780_001 | Banana | plastid | 60.38 | 60.17 |
| Zm00001d053585_P002 | Maize | plastid | 56.44 | 57.06 |
| PGSC0003DMT400020941 | Potato | extracellular | 55.49 | 54.58 |
| PGSC0003DMT400057597 | Potato | golgi, vacuole | 41.17 | 49.78 |
| PGSC0003DMT400039333 | Potato | extracellular, golgi | 49.4 | 49.52 |
| PGSC0003DMT400067956 | Potato | extracellular | 51.19 | 48.09 |
| PGSC0003DMT400023852 | Potato | extracellular | 36.04 | 48.01 |
| PGSC0003DMT400023851 | Potato | nucleus, peroxisome, vacuole | 41.41 | 47.93 |
| PGSC0003DMT400059880 | Potato | cytosol | 42.84 | 46.62 |
| PGSC0003DMT400031178 | Potato | vacuole | 43.56 | 44.03 |
| PGSC0003DMT400015841 | Potato | endoplasmic reticulum, golgi, vacuole | 41.05 | 42.52 |
Protein Annotations
| KEGG:00052+3.2.1.23 | KEGG:00511+3.2.1.23 | KEGG:00531+3.2.1.23 | KEGG:00600+3.2.1.23 | KEGG:00604+3.2.1.23 | EntrezGene:102589962 |
| Gene3D:2.60.120.260 | Gene3D:2.60.120.740 | MapMan:21.3.2.2.2 | Gene3D:3.20.20.80 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004553 | GO:GO:0004565 | GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016787 | GO:GO:0016798 | GO:GO:0030246 | InterPro:Galactose-bd-like_sf | InterPro:Gly_Hdrlase_35_cat | InterPro:Glyco_hydro_35_CS |
| InterPro:Glycoside_Hdrlase_35 | InterPro:Glycoside_hydrolase_SF | InterPro:IPR000922 | InterPro:IPR008979 | InterPro:Lectin_gal-bd_dom | UniProt:M0ZRS7 |
| PFAM:PF01301 | PFAM:PF02140 | EnsemblPlantsGene:PGSC0003DMG400002590 | PGSC:PGSC0003DMG400002590 | EnsemblPlants:PGSC0003DMT400006654 | PRINTS:PR00742 |
| ScanProsite:PS01182 | PFscan:PS50228 | PANTHER:PTHR23421 | PANTHER:PTHR23421:SF74 | SUPFAM:SSF49785 | SUPFAM:SSF51445 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000294C030 | RefSeq:XP_006342989.1 | SEG:seg | : |
Description
Beta-galactosidase [Source:PGSC_GENE;Acc:PGSC0003DMG400002590]
Coordinates
chr3:+:60832523..60838528
Molecular Weight (calculated)
92869.7 Da
IEP (calculated)
8.339
GRAVY (calculated)
-0.215
Length
838 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCKLILMLN VLFVLLGSWV FSGTASVSYD HRAIIVNGQR RILISGSVHY PRSTPEMWPG IIQKAKEGGV DVIQTYVFWN GHEPQQGKYY FEGRYDLVKF
101: IKLVHQAGLY VHLRVGPYAC AEWNFGGFPV WLKYVPGISF RTNNGPFKAA MQKFTTKIVN MMKAERLYET QGGPIILSQI ENEYGPMEWE LGAPGKSYAQ
201: WAAKMAVGLD TGVPWVMCKQ DDAPDPIINA CNGFYCDYFS PNKAYKPKIW TEAWTAWFTG FGNPVPYRPA EDLAFAVAKF IQKGGSFINY YMYHGGTNFG
301: RTAGGPFIAT SYDYDAPLDE YGLLRQPKWG HLKDLHRAIK LCEPALVSGD PAVTALGHQQ EAHVFRSKSG SCAAFLANYD QHSFATVSFA NRHYNLPPWS
401: ISILPDCKNT VFNTARIGAQ SAQMKMTPVS RGLPWQSFNE ETSSYEDSSF TVVGLLEQIN TTRDVSDYLW YSTDVKIDSR EEFLRGGKWP WLTIMSAGHA
501: LHVFVNGQLA GTAYGSLEKP KLSFSKAVNL RAGVNKISLL SIAVGLPNIG PHFETWNAGV LGPVSLSGLD EGKRDLTWQK WSYKVGLKGE ALSLHSLSGS
601: SSVEWVEGSL VAQRQPLTWY KSTFNAPAGN DPLALDLNTM GKGQVWINGQ SLGRYWPGYK ASGNCGACNY AGWFNEKKCL SNCGEASQRM YHVPRSWLYP
701: TGNLLVLFEE SGGEPHGISL VKREVASVCA DINEWQPQLM NWQMQASGKV DKPLRPKAHL SCASGQKITS IKFASFGTPQ GVCGSFREGS CHAFHSYDAF
801: ERYCIGQNSC SVPVTPEIFG GDPCPHVMKK LSVEVICS
101: IKLVHQAGLY VHLRVGPYAC AEWNFGGFPV WLKYVPGISF RTNNGPFKAA MQKFTTKIVN MMKAERLYET QGGPIILSQI ENEYGPMEWE LGAPGKSYAQ
201: WAAKMAVGLD TGVPWVMCKQ DDAPDPIINA CNGFYCDYFS PNKAYKPKIW TEAWTAWFTG FGNPVPYRPA EDLAFAVAKF IQKGGSFINY YMYHGGTNFG
301: RTAGGPFIAT SYDYDAPLDE YGLLRQPKWG HLKDLHRAIK LCEPALVSGD PAVTALGHQQ EAHVFRSKSG SCAAFLANYD QHSFATVSFA NRHYNLPPWS
401: ISILPDCKNT VFNTARIGAQ SAQMKMTPVS RGLPWQSFNE ETSSYEDSSF TVVGLLEQIN TTRDVSDYLW YSTDVKIDSR EEFLRGGKWP WLTIMSAGHA
501: LHVFVNGQLA GTAYGSLEKP KLSFSKAVNL RAGVNKISLL SIAVGLPNIG PHFETWNAGV LGPVSLSGLD EGKRDLTWQK WSYKVGLKGE ALSLHSLSGS
601: SSVEWVEGSL VAQRQPLTWY KSTFNAPAGN DPLALDLNTM GKGQVWINGQ SLGRYWPGYK ASGNCGACNY AGWFNEKKCL SNCGEASQRM YHVPRSWLYP
701: TGNLLVLFEE SGGEPHGISL VKREVASVCA DINEWQPQLM NWQMQASGKV DKPLRPKAHL SCASGQKITS IKFASFGTPQ GVCGSFREGS CHAFHSYDAF
801: ERYCIGQNSC SVPVTPEIFG GDPCPHVMKK LSVEVICS
001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA
Arabidopsis Description
BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]
SUBAcon: [golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.