Factsheet for PGSC0003DMT400039333

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 7
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g019890.2.1	Tomato	nucleus	97.61	93.79
VIT_07s0031g02480.t01	Wine grape	extracellular	71.05	70.13
KRH63980	Soybean	vacuole	67.94	67.38
KRH53957	Soybean	nucleus	67.82	67.1
AT5G63810.1	Thale cress	golgi, vacuole	57.18	64.51
CDX84446	Canola	golgi, vacuole	56.22	63.43
CDY43757	Canola	golgi, vacuole	56.1	63.29
Bra024238.1-P	Field mustard	golgi, vacuole	56.1	63.29
GSMUA_Achr6P18730_001	Banana	golgi, vacuole	55.98	61.58
TraesCS3A01G386300.1	Wheat	golgi, vacuole	61.0	60.64
TraesCS3D01G379300.2	Wheat	vacuole	61.12	60.55
EES01845	Sorghum	endoplasmic reticulum, golgi, vacuole	60.89	60.38
HORVU3Hr1G081960.9	Barley	vacuole	61.0	60.28
TraesCS3B01G418400.2	Wheat	vacuole	60.41	59.83
TraesCS3A01G386200.1	Wheat	vacuole	59.93	59.36
TraesCS3D01G379200.1	Wheat	vacuole	59.45	58.89
HORVU3Hr1G081970.1	Barley	vacuole	57.54	58.73
TraesCS3B01G418300.2	Wheat	vacuole	58.49	56.99
Zm00001d042654_P005	Maize	endoplasmic reticulum, golgi, vacuole	58.01	56.0
Os01t0875500-01	Rice	endoplasmic reticulum, mitochondrion, nucleus, vacuole	60.41	54.95
PGSC0003DMT400079498	Potato	vacuole	45.33	52.13
PGSC0003DMT400009496	Potato	nucleus, peroxisome, vacuole	32.78	50.65
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	40.31	50.3
PGSC0003DMT400083896	Potato	extracellular	50.12	50.18
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	50.24	49.7
PGSC0003DMT400006654	Potato	golgi, vacuole	49.52	49.4
PGSC0003DMT400020941	Potato	extracellular	49.76	48.83
PGSC0003DMT400012359	Potato	golgi, vacuole	48.68	48.45
PGSC0003DMT400023851	Potato	nucleus, peroxisome, vacuole	40.43	46.69
PGSC0003DMT400023852	Potato	extracellular	34.57	45.95
PGSC0003DMT400057597	Potato	golgi, vacuole	37.68	45.45
PGSC0003DMT400067956	Potato	extracellular	48.21	45.18
PGSC0003DMT400059880	Potato	cytosol	39.83	43.25
PGSC0003DMT400015841	Potato	endoplasmic reticulum, golgi, vacuole	38.88	40.17
PGSC0003DMT400031178	Potato	vacuole	39.71	40.05
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	21.17	39.6

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0004565	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009341	GO:GO:0009505	GO:GO:0009628	GO:GO:0016787
GO:GO:0016798	GO:GO:0030246	GO:GO:0030312	GO:GO:0080167	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat
InterPro:Glyco_hydro_42_N	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979	InterPro:Lectin_gal-bd_dom
UniProt:M1B854	PFAM:PF01301	PFAM:PF02140	PFAM:PF02449	EnsemblPlantsGene:PGSC0003DMG400015211	PGSC:PGSC0003DMG400015211
EnsemblPlants:PGSC0003DMT400039333	PRINTS:PR00742	PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF67	SUPFAM:SSF49785
SUPFAM:SSF51445	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000295D998	:	:

Description

Beta-galactosidase [Source:PGSC_GENE;Acc:PGSC0003DMG400015211]

Coordinates

chr3:-:50214691..50224678

Molecular Weight (calculated)

93009.6 Da

IEP (calculated)

8.168

GRAVY (calculated)

-0.291

Length

836 amino acids

Sequence
(BLAST)

001: MSCLSSNFKF VFLAFTVIWI TVMSSSLAAV DASNVTTIGT GSVTYDRRSL IINGQRKLLI SASIHYPRSV PAMWPGLVRL AKEGGVDVIE TYVFWNGHEP
101: SPGNYYFGGR FDLVKFCKIV QQAGMYMILR IGPFVAAEWN FGGLPVWLHY VPGTTFRTDS EPFKVENEYG NYQNAYGEGG KRYALWAAKM ALSQNTGVPW
201: IMCQQYDAPD PVIDTCNSFY CDQFKPISPN KPKIWTENWP GWFKTFGARD PHRPAEDVAY SVARFFQKGG SVQNYYMYHG GTNFGRTAGG PFITTSYDYD
301: APIDEYGLAR FPKWGHLKEL HKVIKSCEHA LLNNDPTLLS LGPLQEADVY EDASGACAAF LANMDDKNDK VVQFRHVSYH LPAWSVSILP DCKNVAFNTA
401: KVGCQTSIVN MAPIDLHPTA SSPKRDIKSL QWEVFKETAG VWGVADFTKN GFVDHINTTK DATDYLWYTT SIFVHAEEDF LRNRGTAMLF VESKGHTMHV
501: FINKKLQASA SGNGTVPQFK FGTPIALKAG KNEIALLSMT VGLQTAGAFY EWIGAGPTSV KVAGFKSGIV DLTASAWTYK IGLQGEHLRI QKSYNLNSKI
601: WAPTSQPPKQ QPLTWYKAVV DAPPGNEPVA LDMIHMGKGM AWLNGQEIGR YWPRRTSKYE KCVTQCDYRG KFNPDKCVTG CGQPTQRWYH VPRSWFKPSG
701: NVLIIFEETG GDPSQIRFSM RKVSGACGHL SEDHPSFDVE NLQGSEIEKD KNRPTLRLKC PTNTNISSVK FASFGNPNGT CGSYMLGDCH DPNSASLVEK
801: VCLNQNECAL EMSSSNFNMQ LCPSTVKKLA VEVNCS

Best Arabidopsis Sequence Match ( AT5G63810.1 )
(BLAST)

001: MNRVTTESIA STAILVVMVF LFSWRSIEAA NVSYDHRSLT IGNRRQLIIS AAIHYPRSVP AMWPSLVQTA KEGGCNAIES YVFWNGHEPS PGKYYFGGRY
101: NIVKFIKIVQ QAGMHMILRI GPFVAAEWNY GGVPVWLHYV PGTVFRADNE PWKHYMESFT TYIVNLLKQE KLFAPQGGPI ILSQVENEYG YYEKDYGEGG
201: KRYAQWSASM AVSQNIGVPW MMCQQWDAPP TVISTCNGFY CDQFTPNTPD KPKIWTENWP GWFKTFGGRD PHRPAEDVAY SVARFFGKGG SVHNYYMYHG
301: GTNFGRTSGG PFITTSYDYE APIDEYGLPR LPKWGHLKDL HKAIMLSENL LISGEHQNFT LGHSLEADVY TDSSGTCAAF LSNLDDKNDK AVMFRNTSYH
401: LPAWSVSILP DCKTEVFNTA KVTSKSSKVE MLPEDLKSSS GLKWEVFSEK PGIWGAADFV KNELVDHINT TKDTTDYLWY TTSITVSENE AFLKKGSSPV
501: LFIESKGHTL HVFINKEYLG TATGNGTHVP FKLKKPVALK AGENNIDLLS MTVGLANAGS FYEWVGAGLT SVSIKGFNKG TLNLTNSKWS YKLGVEGEHL
601: ELFKPGNSGA VKWTVTTKPP KKQPLTWYKV VIEPPSGSEP VGLDMISMGK GMAWLNGEEI GRYWPRIARK NSPNDECVKE CDYRGKFMPD KCLTGCGEPS
701: QRWYHVPRSW FKSSGNELVI FEEKGGNPMK IKLSKRKVSV V

Arabidopsis Description

BGAL10Beta-galactosidase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN08]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.