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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 6
  • vacuole 6
  • plasma membrane 5
  • golgi 7
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, golgi, vacuole
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:golgi
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d042654_P005 Maize endoplasmic reticulum, golgi, vacuole 90.39 87.99
TraesCS3D01G379300.2 Wheat vacuole 82.09 81.99
TraesCS3A01G386300.1 Wheat golgi, vacuole 81.38 81.57
TraesCS3B01G418400.2 Wheat vacuole 81.38 81.28
HORVU3Hr1G081960.9 Barley vacuole 81.14 80.85
TraesCS3D01G379200.1 Wheat vacuole 80.31 80.21
TraesCS3A01G386200.1 Wheat vacuole 79.36 79.27
HORVU3Hr1G081970.1 Barley vacuole 75.56 77.78
TraesCS3B01G418300.2 Wheat vacuole 78.88 77.51
Os01t0875500-01 Rice endoplasmic reticulum, mitochondrion, nucleus, vacuole 80.66 73.99
GSMUA_Achr6P18730_001 Banana golgi, vacuole 59.67 66.18
VIT_07s0031g02480.t01 Wine grape extracellular 65.36 65.05
KRH53957 Soybean nucleus 65.01 64.85
KRH63980 Soybean vacuole 64.77 64.77
CDY43757 Canola golgi, vacuole 54.92 62.48
Bra024238.1-P Field mustard golgi, vacuole 54.8 62.35
AT5G63810.1 Thale cress golgi, vacuole 54.57 62.08
CDX84446 Canola golgi, vacuole 54.45 61.94
PGSC0003DMT400039333 Potato extracellular, golgi 60.38 60.89
Solyc03g019890.2.1 Tomato nucleus 62.63 60.69
EER92534 Sorghum endoplasmic reticulum, golgi 52.55 51.51
EER88554 Sorghum golgi, vacuole 43.77 50.9
EER92805 Sorghum vacuole 50.42 50.48
OQU87043 Sorghum golgi, vacuole 49.35 50.3
EES06516 Sorghum mitochondrion, plastid 43.53 49.59
EES16726 Sorghum extracellular 48.28 44.1
EES03081 Sorghum extracellular 42.23 42.89
KXG22057 Sorghum vacuole 42.23 42.58
KXG25431 Sorghum golgi 41.16 40.92
KXG36088 Sorghum endoplasmic reticulum, golgi, vacuole 39.86 40.14
Protein Annotations
KEGG:00052+3.2.1.23KEGG:00511+3.2.1.23KEGG:00531+3.2.1.23KEGG:00600+3.2.1.23KEGG:00604+3.2.1.23Gene3D:2.60.120.260
Gene3D:2.60.120.740MapMan:21.2.1.2.4MapMan:21.3.2.2.2Gene3D:3.20.20.80EntrezGene:8061004InterPro:BetaGal_jelly_roll_dom
UniProt:C5XRC3EnsemblPlants:EES01845ProteinID:EES01845ProteinID:EES01845.1GO:GO:0003674GO:GO:0003824
GO:GO:0004553GO:GO:0004565GO:GO:0005488GO:GO:0005575GO:GO:0005618GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009505GO:GO:0009628GO:GO:0016787GO:GO:0016798GO:GO:0030246GO:GO:0030312
GO:GO:0080167InterPro:Galactose-bd-like_sfInterPro:Gly_Hdrlase_35_catInterPro:Glycoside_Hdrlase_35InterPro:Glycoside_hydrolase_SFInterPro:IPR000922
InterPro:IPR008979InterPro:Lectin_gal-bd_domPFAM:PF01301PFAM:PF02140PFAM:PF13364PRINTS:PR00742
PFscan:PS50228PANTHER:PTHR23421PANTHER:PTHR23421:SF67MetaCyc:PWY-6807EnsemblPlantsGene:SORBI_3003G374100SUPFAM:SSF49785
SUPFAM:SSF51445unigene:Sbi.18848SignalP:SignalP-noTMUniParc:UPI0001A84FABRefSeq:XP_002456725.1SEG:seg
Description
hypothetical protein
Coordinates
chr3:+:68920063..68930526
Molecular Weight (calculated)
93858.4 Da
IEP (calculated)
6.900
GRAVY (calculated)
-0.340
Length
843 amino acids
Sequence
(BLAST)
001: MAAAAASFSA LPFLLLLLLV PSLDAASNVT YDHRSLIISG RRRLIISTSI HYPRSVPEMW PKLVAEAKDG GADCIETYVF WNGHEIAPGQ YYFEDRFDLV
101: RFVKVVKDAG LLLILRIGPF VAAEWNFGGV PVWLHYVPGT VFRTDNEPFK SHMKSFTTYI VNMMKKEQLF ASQGGNIILA QIENEYGDYY EQAYAPGGKP
201: YAMWAASMAV AQNTGVPWIM CQESDAPDPV INSCNGFYCD GFQPNSPTKP KLWTENWPGW FQTFGESNPH RPPEDVAFAV ARFFEKGGSV QNYYVYHGGT
301: NFGRTTGGPF ITTSYDYDAP IDEYGLRRFP KWAHLRDLHK SIRLCEHTLL YGNTTFLSLG PKQEADIYSD QSGGCVAFLA NIDSANDKVV TFRNRQYDLP
401: AWSVSILPDC RNVVFNTAKV QSQTSMVAMV PESLQASKPE RWNIFRERTG IWGKNDFVRN GFVDHINTTK DSTDYLWYTT SFSVDESYSK GSHVVLNIDS
501: KGHGVHAFLN NEFIGSAYGN GSQSSFSVKL PINLRTGKNE LALLSMTVGL QNAGFSYEWI GAGFTNVNIS GVRNGTINLS SNNWAYKIGL EGEYYSLFKP
601: DQRNNQRWIP QSEPPKNQPL TWYKVNVDVP QGDDPVGIDM QSMGKGLVWL NGNAIGRYWP RTSSIDDRCT PSCDYRGEFN PNKCRTGCGQ PTQRWYHIPR
701: SWFHPSGNIL VIFEEKGGDP TKITFSRRAV TSVCSFVSEH FPSIDLESWD GSATNEGTSP AKAQLSCPIG KNISSLKFAS LGTPSGTCRS YQKGSCHHPN
801: SLSVVEKACL NTNSCTVSLS DESFGKDLCP GVTKTLAIEA DCS
Best Arabidopsis Sequence Match ( AT5G63810.1 )
(BLAST)
001: MNRVTTESIA STAILVVMVF LFSWRSIEAA NVSYDHRSLT IGNRRQLIIS AAIHYPRSVP AMWPSLVQTA KEGGCNAIES YVFWNGHEPS PGKYYFGGRY
101: NIVKFIKIVQ QAGMHMILRI GPFVAAEWNY GGVPVWLHYV PGTVFRADNE PWKHYMESFT TYIVNLLKQE KLFAPQGGPI ILSQVENEYG YYEKDYGEGG
201: KRYAQWSASM AVSQNIGVPW MMCQQWDAPP TVISTCNGFY CDQFTPNTPD KPKIWTENWP GWFKTFGGRD PHRPAEDVAY SVARFFGKGG SVHNYYMYHG
301: GTNFGRTSGG PFITTSYDYE APIDEYGLPR LPKWGHLKDL HKAIMLSENL LISGEHQNFT LGHSLEADVY TDSSGTCAAF LSNLDDKNDK AVMFRNTSYH
401: LPAWSVSILP DCKTEVFNTA KVTSKSSKVE MLPEDLKSSS GLKWEVFSEK PGIWGAADFV KNELVDHINT TKDTTDYLWY TTSITVSENE AFLKKGSSPV
501: LFIESKGHTL HVFINKEYLG TATGNGTHVP FKLKKPVALK AGENNIDLLS MTVGLANAGS FYEWVGAGLT SVSIKGFNKG TLNLTNSKWS YKLGVEGEHL
601: ELFKPGNSGA VKWTVTTKPP KKQPLTWYKV VIEPPSGSEP VGLDMISMGK GMAWLNGEEI GRYWPRIARK NSPNDECVKE CDYRGKFMPD KCLTGCGEPS
701: QRWYHVPRSW FKSSGNELVI FEEKGGNPMK IKLSKRKVSV V
Arabidopsis Description
BGAL10Beta-galactosidase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN08]
SUBAcon: [golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.