Factsheet for Solyc03g019890.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 3
golgi 6
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039333	Potato	extracellular, golgi	93.79	97.61
VIT_07s0031g02480.t01	Wine grape	extracellular	70.69	72.61
KRH63980	Soybean	vacuole	68.62	70.82
KRH53957	Soybean	nucleus	68.28	70.3
AT5G63810.1	Thale cress	golgi, vacuole	57.59	67.61
CDX84446	Canola	golgi, vacuole	56.67	66.53
Bra024238.1-P	Field mustard	golgi, vacuole	56.55	66.4
CDY43757	Canola	golgi, vacuole	56.55	66.4
GSMUA_Achr6P18730_001	Banana	golgi, vacuole	56.21	64.34
EES01845	Sorghum	endoplasmic reticulum, golgi, vacuole	60.69	62.63
TraesCS3D01G379300.2	Wheat	vacuole	60.69	62.56
TraesCS3A01G386300.1	Wheat	golgi, vacuole	60.46	62.54
HORVU3Hr1G081960.9	Barley	vacuole	60.34	62.06
TraesCS3B01G418400.2	Wheat	vacuole	60.11	61.97
TraesCS3A01G386200.1	Wheat	vacuole	59.54	61.37
TraesCS3D01G379200.1	Wheat	vacuole	58.97	60.78
HORVU3Hr1G081970.1	Barley	vacuole	57.13	60.68
TraesCS3B01G418300.2	Wheat	vacuole	58.05	58.86
Zm00001d042654_P005	Maize	endoplasmic reticulum, golgi, vacuole	57.7	57.97
Os01t0875500-01	Rice	endoplasmic reticulum, mitochondrion, nucleus, vacuole	60.0	56.8
Solyc01g110000.2.1	Tomato	nucleus	45.63	54.61
Solyc04g080840.1.1	Tomato	extracellular, golgi	45.29	53.61
Solyc12g008840.1.1	Tomato	extracellular	44.14	53.04
Solyc12g044880.1.1	Tomato	golgi, vacuole	49.89	51.98
Solyc03g121540.2.1	Tomato	nucleus	50.0	51.91
Solyc02g084720.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	50.11	51.6
Solyc06g062580.2.1	Tomato	nucleus	49.43	51.13
Solyc11g069270.1.1	Tomato	extracellular	49.31	50.35
Solyc11g018500.1.1	Tomato	cytosol, golgi, vacuole	39.66	49.64
Solyc02g078950.2.1	Tomato	vacuole	47.13	48.58
Solyc11g018490.1.1	Tomato	cytosol	41.61	47.95
Solyc09g092160.2.1	Tomato	extracellular	47.13	45.96
Solyc07g042220.1.1	Tomato	unclear	42.3	44.99
Solyc01g111540.2.1	Tomato	unclear	41.03	42.96
Solyc10g055470.1.1	Tomato	vacuole	40.0	41.98

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.2.1.2.4	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0004565	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009505	GO:GO:0009628	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	GO:GO:0030312
GO:GO:0080167	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF
InterPro:IPR000922	InterPro:IPR008979	UniProt:K4BEW1	InterPro:Lectin_gal-bd_dom	PFAM:PF01301	PFAM:PF02140
PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF67	SUPFAM:SSF49785
SUPFAM:SSF51445	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc03g019890.2	EnsemblPlants:Solyc03g019890.2.1	TMHMM:TMhelix	UniParc:UPI00027688DF
SEG:seg	:	:	:	:	:

Description

Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:K4BEW1]

Coordinates

chr3:-:61302054..61311655

Molecular Weight (calculated)

97035.6 Da

IEP (calculated)

8.167

GRAVY (calculated)

-0.285

Length

870 amino acids

Sequence
(BLAST)

001: MNTMSCLSSN FKFVFLASTV IWMTVMSSSL AAVDASNVTT IGTDSVTYDR RSLIINGQRK LLISASIHYP RSVPAMWPGL VRLAKEGGVD VIETYVFWNG
101: HEPSPGNYYF GGRFDLVKFC KIIQQAGMYM ILRIGPFVAA EWNFGGLPVW LHYVPGTTFR TDSEPFKYHM QKFMTYTVNL MKRERLFASQ GGPIILSQVE
201: NEYGYYENAY GEGGKRYALW AAKMALSQNT GVPWIMCQQY DAPDPVIDTC NSFYCDQFKP ISPNKPKIWT ENWPGWFKTF GARDPHRPAE DVAYSVARFF
301: QKGGSVQNYY MYHGGTNFGR TAGGPFITTS YDYDAPIDEY GLPRFPKWGH LKELHKVIKS CEHALLNNDP TLLSLGPLQE ADVYEDASGA CAAFLANMDD
401: KNDKVVQFRH VSYHLPAWSV SILPDCKNVA FNTAKVGCQT SIVNMAPIDL HPTASSPKRD IKSLQWEVFK ETAGVWGVAD FTKNGFVDHI NTTKDATDYL
501: WYTTSIFVHA EEDFLRNRGT AMLFVESKGH AMHVFINKKL QASASGNGTV PQFKFGTPIA LKAGKNEIAL LSMTVGLQTA GAFYEWIGAG PTSVKVAGFK
601: TGTMDLTASA WTYKIGLQGE HLRIQKSYNL KSKIWAPTSQ PPKQQPLTWY KAVVDAPPGN EPVALDMIHM GKGMAWLNGQ EIGRYWPRRT SKYENCVTQC
701: DYRGKFNPDK CVTGCGQPTQ RWYHVPRSWF KPSGNVLIIF EEIGGDPSQI RFSMRKVSGA CGHLSVDHPS FDVENLQGSE IENDKNRPTL SLKCPTNTNI
801: SSVKFASFGN PNGTCGSYML GDCHDQNSAA LVEKVCLNQN ECALEMSSAN FNMQLCPSTV KKLAVEVNCS

Best Arabidopsis Sequence Match ( AT5G63810.1 )
(BLAST)

001: MNRVTTESIA STAILVVMVF LFSWRSIEAA NVSYDHRSLT IGNRRQLIIS AAIHYPRSVP AMWPSLVQTA KEGGCNAIES YVFWNGHEPS PGKYYFGGRY
101: NIVKFIKIVQ QAGMHMILRI GPFVAAEWNY GGVPVWLHYV PGTVFRADNE PWKHYMESFT TYIVNLLKQE KLFAPQGGPI ILSQVENEYG YYEKDYGEGG
201: KRYAQWSASM AVSQNIGVPW MMCQQWDAPP TVISTCNGFY CDQFTPNTPD KPKIWTENWP GWFKTFGGRD PHRPAEDVAY SVARFFGKGG SVHNYYMYHG
301: GTNFGRTSGG PFITTSYDYE APIDEYGLPR LPKWGHLKDL HKAIMLSENL LISGEHQNFT LGHSLEADVY TDSSGTCAAF LSNLDDKNDK AVMFRNTSYH
401: LPAWSVSILP DCKTEVFNTA KVTSKSSKVE MLPEDLKSSS GLKWEVFSEK PGIWGAADFV KNELVDHINT TKDTTDYLWY TTSITVSENE AFLKKGSSPV
501: LFIESKGHTL HVFINKEYLG TATGNGTHVP FKLKKPVALK AGENNIDLLS MTVGLANAGS FYEWVGAGLT SVSIKGFNKG TLNLTNSKWS YKLGVEGEHL
601: ELFKPGNSGA VKWTVTTKPP KKQPLTWYKV VIEPPSGSEP VGLDMISMGK GMAWLNGEEI GRYWPRIARK NSPNDECVKE CDYRGKFMPD KCLTGCGEPS
701: QRWYHVPRSW FKSSGNELVI FEEKGGNPMK IKLSKRKVSV V

Arabidopsis Description

BGAL10Beta-galactosidase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN08]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.