Factsheet for Solyc12g008840.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 7
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

extracellular: 22364583
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	90.19	97.46
CDX88594	Canola	golgi, vacuole	33.7	75.08
KRH12385	Soybean	vacuole	73.89	74.2
KRH37385	Soybean	nucleus	73.76	74.06
GSMUA_Achr7P08970_001	Banana	vacuole	71.13	70.55
AT5G56870.1	Thale cress	vacuole	69.75	69.75
Bra019644.1-P	Field mustard	golgi, plastid, vacuole	68.23	69.38
GSMUA_Achr6P00880_001	Banana	golgi, vacuole	70.03	69.07
GSMUA_Achr7P08960_001	Banana	endoplasmic reticulum, golgi, vacuole	70.17	69.02
CDX94367	Canola	mitochondrion	67.82	68.96
CDY11899	Canola	golgi, vacuole	68.65	68.84
CDX76255	Canola	extracellular	12.15	68.75
GSMUA_Achr7P08940_001	Banana	vacuole	69.34	68.58
Bra006850.1-P	Field mustard	golgi, vacuole	68.37	68.56
GSMUA_Achr7P08950_001	Banana	golgi, vacuole	69.61	68.48
CDX92753	Canola	golgi, vacuole	66.99	68.12
CDX95380	Canola	vacuole	68.23	67.95
CDX76254	Canola	golgi, nucleus, vacuole	55.11	67.86
CDY42755	Canola	vacuole	66.16	67.28
Bra019120.1-P	Field mustard	golgi, vacuole	66.16	67.28
Bra013956.1-P	Field mustard	cytosol, mitochondrion, plastid, vacuole	67.82	67.08
AT4G26140.7	Thale cress	vacuole	69.34	66.67
CDY32919	Canola	golgi, vacuole	66.3	66.48
Bra035634.1-P	Field mustard	golgi, vacuole	65.61	65.79
TraesCS7A01G363600.1	Wheat	plasma membrane, vacuole	65.19	65.74
Os06t0573600-01	Rice	plasma membrane, vacuole	64.92	65.73
EER88554	Sorghum	golgi, vacuole	65.75	65.66
CDY20708	Canola	golgi, vacuole	65.47	65.65
TraesCS6A01G185400.1	Wheat	golgi, vacuole	65.61	65.61
TraesCS7D01G359500.1	Wheat	golgi	64.92	65.55
Zm00001d046357_P001	Maize	extracellular	65.33	65.51
TraesCS6B01G214100.1	Wheat	golgi, vacuole	65.19	65.1
TraesCS7B01G264200.1	Wheat	plasma membrane, vacuole	64.5	65.04
VIT_11s0016g02200.t01	Wine grape	vacuole	75.0	64.95
TraesCS6D01G172400.1	Wheat	golgi, vacuole	64.92	64.83
CDX89360	Canola	mitochondrion	62.43	64.66
Os02t0219200-01	Rice	peroxisome, vacuole	44.48	64.4
CDY70594	Canola	cytosol	36.88	64.18
CDY69471	Canola	cytosol	36.74	63.94
EES06516	Sorghum	mitochondrion, plastid	65.33	63.92
KRH19154	Soybean	golgi, mitochondrion, plastid, vacuole	74.03	63.89
KRH02714	Soybean	golgi, vacuole	74.03	63.89
Solyc01g110000.2.1	Tomato	nucleus	63.81	63.55
HORVU7Hr1G086690.2	Barley	plasma membrane, vacuole	64.92	62.92
Solyc04g080840.1.1	Tomato	extracellular, golgi	63.12	62.18
HORVU6Hr1G039490.6	Barley	plastid	65.61	62.17
AT3G52840.2	Thale cress	golgi, vacuole	66.57	61.72
Solyc12g044880.1.1	Tomato	golgi, vacuole	71.13	61.68
Solyc03g121540.2.1	Tomato	nucleus	71.13	61.46
Solyc06g062580.2.1	Tomato	nucleus	70.72	60.88
Os01t0580200-01	Rice	golgi, vacuole	68.78	60.22
GSMUA_Achr6P35850_001	Banana	golgi, vacuole	68.37	60.07
OQU87043	Sorghum	golgi, vacuole	68.51	59.98
GSMUA_Achr2P16780_001	Banana	plastid	69.48	59.81
Zm00001d044290_P005	Maize	golgi, vacuole	68.23	59.52
HORVU3Hr1G050450.12	Barley	golgi, vacuole	67.54	58.84
TraesCS3A01G208600.1	Wheat	plastid	67.54	58.56
TraesCS3D01G211500.2	Wheat	golgi, vacuole	67.54	58.56
TraesCS3B01G235100.1	Wheat	golgi, vacuole	67.13	58.06
Zm00001d053585_P002	Maize	plastid	64.36	56.21
Solyc02g084720.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	62.98	53.96
Solyc11g018500.1.1	Tomato	cytosol, golgi, vacuole	48.9	50.94
Solyc11g069270.1.1	Tomato	extracellular	55.25	46.95
Solyc02g078950.2.1	Tomato	vacuole	51.93	44.55
Solyc03g019890.2.1	Tomato	nucleus	53.04	44.14
Solyc07g042220.1.1	Tomato	unclear	49.86	44.13
Solyc11g018490.1.1	Tomato	cytosol	45.17	43.31
Solyc09g092160.2.1	Tomato	extracellular	51.52	41.82
Solyc10g055470.1.1	Tomato	vacuole	45.58	39.81
Solyc01g111540.2.1	Tomato	unclear	45.03	39.23

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0004565
GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312
InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979
UniProt:K4DBX2	PFAM:PF01301	PRINTS:PR00742	ScanProsite:PS01182	PANTHER:PTHR23421	PANTHER:PTHR23421:SF74
SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc12g008840.1	EnsemblPlants:Solyc12g008840.1.1	UniParc:UPI00027696D2
SEG:seg	:	:	:	:	:

Description

Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:K4DBX2]

Coordinates

chr12:+:2183773..2190243

Molecular Weight (calculated)

80485.7 Da

IEP (calculated)

9.037

GRAVY (calculated)

-0.319

Length

724 amino acids

Sequence
(BLAST)

001: MLRTNVLLLL VICLLDFFSS VKASVSYDDR AIIINGKRKI LISGSIHYPR STPQMWPDLI QKAKDGGLDV IETYVFWNGH EPSPGKYNFE GRYDLVRFIK
101: MVQRAGLYVN LRIGPYVCAE WNFGGFPVWL KYVPGMEFRT NNQPFKVAMQ GFVQKIVNMM KSENLFESQG GPIIMAQIEN EYGPVEWEIG APGKAYTKWA
201: AQMAVGLKTG VPWIMCKQED APDPVIDTCN GFYCEGFRPN KPYKPKMWTE VWTGWYTKFG GPIPQRPAED IAFSVARFVQ NNGSFFNYYM YHGGTNFGRT
301: SSGLFIATSY DYDAPLDEYG LLNEPKYGHL RDLHKAIKLS EPALVSSYAA VTSLGSNQEA HVYRSKSGAC AAFLSNYDSR YSVKVTFQNR PYNLPPWSIS
401: ILPDCKTAVY NTAQVNSQSS SIKMTPAGGG LSWQSYNEET PTADDSDTLT ANGLWEQKNV TRDSSDYLWY MTNVNIASNE GFLKNGKDPY LTVMSAGHVL
501: HVFVNGKLSG TVYGTLDNPK LTYSGNVKLR AGINKISLLS VSVGLPNVGV HYDTWNAGVL GPVTLSGLNE GSRNLAKQKW SYKVGLKGES LSLHSLSGSS
601: SVEWVRGSLV AQKQPLTWYK ATFNAPGGND PLALDMASMG KGQIWINGEG VGRHWPGYIA QGDCSKCSYA GTFNEKKCQT NCGQPSQRWY HVPRSWLKPS
701: GNLLVVFEEW GGNPTGISLV RRSR

Best Arabidopsis Sequence Match ( AT3G13750.1 )
(BLAST)

001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA

Arabidopsis Description

BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.