Factsheet for HORVU6Hr1G039490.6

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	golgi, mitochondrion, plastid, vacuole
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	vacuole
TargetP:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G018030.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13750.1	HORVU3Hr1G018030.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G185400.1	Wheat	golgi, vacuole	91.62	96.69
TraesCS6B01G214100.1	Wheat	golgi, vacuole	91.62	96.55
TraesCS6D01G172400.1	Wheat	golgi, vacuole	91.1	96.0
Os02t0219200-01	Rice	peroxisome, vacuole	58.12	88.8
EES06516	Sorghum	mitochondrion, plastid	84.16	86.89
HORVU7Hr1G086690.2	Barley	plasma membrane, vacuole	76.83	78.58
Zm00001d053585_P002	Maize	plastid	81.94	75.51
GSMUA_Achr7P08970_001	Banana	vacuole	68.98	72.19
GSMUA_Achr6P00880_001	Banana	golgi, vacuole	68.19	70.98
GSMUA_Achr7P08960_001	Banana	endoplasmic reticulum, golgi, vacuole	67.93	70.52
GSMUA_Achr7P08950_001	Banana	golgi, vacuole	67.54	70.11
GSMUA_Achr7P08940_001	Banana	vacuole	66.88	69.81
CDX88594	Canola	golgi, vacuole	29.32	68.92
CDX76255	Canola	extracellular	11.39	67.97
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	58.38	66.57
KRH37385	Soybean	nucleus	62.17	65.88
KRH12385	Soybean	vacuole	62.04	65.74
Solyc12g008840.1.1	Tomato	extracellular	62.17	65.61
Bra019644.1-P	Field mustard	golgi, plastid, vacuole	60.21	64.61
CDX94367	Canola	mitochondrion	60.08	64.47
GSMUA_Achr2P16780_001	Banana	plastid	70.68	64.21
CDX95380	Canola	vacuole	60.6	63.69
AT5G56870.1	Thale cress	vacuole	59.42	62.71
Bra013956.1-P	Field mustard	cytosol, mitochondrion, plastid, vacuole	60.08	62.7
CDX76254	Canola	golgi, nucleus, vacuole	47.91	62.24
CDY11899	Canola	golgi, vacuole	58.64	62.05
Bra006850.1-P	Field mustard	golgi, vacuole	58.51	61.91
CDX89360	Canola	mitochondrion	56.54	61.8
CDX92753	Canola	golgi, vacuole	57.07	61.24
CDY32919	Canola	golgi, vacuole	57.72	61.08
Bra035634.1-P	Field mustard	golgi, vacuole	57.59	60.94
CDY42755	Canola	vacuole	56.68	60.81
CDY20708	Canola	golgi, vacuole	57.46	60.8
Bra019120.1-P	Field mustard	golgi, vacuole	56.54	60.67
AT4G26140.7	Thale cress	vacuole	59.16	60.03
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	65.05	59.1
HORVU3Hr1G050450.12	Barley	golgi, vacuole	64.01	58.84
Bra027403.1-P	Field mustard	golgi, vacuole	64.53	58.76
CDY23637	Canola	golgi, vacuole	64.4	58.64
CDX97513	Canola	golgi, vacuole	64.4	58.57
AT3G52840.2	Thale cress	golgi, vacuole	59.82	58.51
CDY51738	Canola	golgi, vacuole	64.01	58.28
KRH44153	Soybean	nucleus	64.14	58.13
AT3G13750.1	Thale cress	golgi, vacuole	64.4	58.09
CDY37486	Canola	golgi, vacuole	63.61	57.93
KRH10007	Soybean	nucleus	63.61	57.86
KRH47126	Soybean	nucleus	63.87	57.75
KRH23324	Soybean	vacuole	63.09	57.31
Bra021506.1-P	Field mustard	vacuole	64.14	56.91
PGSC0003DMT400083896	Potato	extracellular	62.04	56.77
CDY70594	Canola	cytosol	30.89	56.73
CDY69471	Canola	cytosol	30.89	56.73
Solyc12g044880.1.1	Tomato	golgi, vacuole	61.91	56.65
Solyc03g121540.2.1	Tomato	nucleus	62.04	56.56
Solyc06g062580.2.1	Tomato	nucleus	62.17	56.48
PGSC0003DMT400006654	Potato	golgi, vacuole	61.91	56.44
PGSC0003DMT400012359	Potato	golgi, vacuole	61.91	56.31
KRH19154	Soybean	golgi, mitochondrion, plastid, vacuole	61.52	56.02
KRH02714	Soybean	golgi, vacuole	61.52	56.02
VIT_11s0016g02200.t01	Wine grape	vacuole	60.86	55.62
HORVU4Hr1G074280.4	Barley	vacuole	58.25	52.54
HORVU0Hr1G008780.10	Barley	plasma membrane, vacuole	53.01	46.61
HORVU2Hr1G057440.2	Barley	vacuole	31.94	46.56
HORVU3Hr1G081970.1	Barley	vacuole	48.04	44.81
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	26.05	44.52
HORVU3Hr1G081960.9	Barley	vacuole	48.04	43.38
HORVU5Hr1G045820.9	Barley	extracellular, plasma membrane, vacuole	48.69	40.83
HORVU1Hr1G003210.2	Barley	golgi, vacuole	44.11	40.75
HORVU1Hr1G003200.1	Barley	golgi, vacuole	44.24	40.72
HORVU1Hr1G065290.7	Barley	vacuole	42.93	39.9
HORVU3Hr1G081980.9	Barley	cytosol, vacuole	38.87	39.39
HORVU7Hr1G057460.1	Barley	golgi	41.62	38.22
HORVU7Hr1G009630.2	Barley	cytosol	28.27	31.35

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
MapMan:21.3.2.2.2	Gene3D:3.20.20.80	UniProt:A0A287TZX1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0004565	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	EnsemblPlantsGene:HORVU6Hr1G039490
EnsemblPlants:HORVU6Hr1G039490.6	InterPro:IPR008979	PFAM:PF01301	PRINTS:PR00742	ScanProsite:PS01182	PANTHER:PTHR23421
PANTHER:PTHR23421:SF70	SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI000B4892ED	:	:

Description

Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:A0A287TZX1]

Coordinates

chrchr6H:-:205453609..205458357

Molecular Weight (calculated)

84856.9 Da

IEP (calculated)

9.327

GRAVY (calculated)

-0.351

Length

764 amino acids

Sequence
(BLAST)

001: SASPLRCLTR SLAPTPATEP QCRTQSCRSA GVRGPNERLA MAPPLVAGGR LLLATFVAFY LAASWANAAV SYDHRSLVIN GRRRILISGS IHYPRSTPEM
101: WPGLIQKAKD GGLDVIQTYV FWNGHEPVKG QYYFRDRYDL VRFVKLAKQA GLYVHLRIGP YVCAEWNFGG FPVWLKYVPG ISFRTDNGPF KAEMQRFVEK
201: IVSMMKSERL FEWQGGPIIM SQVENEFGPM ESVGGSGAKP YTNWAAKMAV ATNTGVPWVM CKQEDAPDPV INTCNGFYCD YFTPNKKNKP TMWTEAWTGW
301: FTSFGGAVPH RPVEDMAFAV ARFIQKGGSF VNYYMYHGGT NFGRTAGGPF IATSYDYDAP IDEFGLLRQP KWGHLRDLHK AIKQAEPILV SGDPTIQSLG
401: NYEKAYVFKS KNGACAAAFL SNYHMNAAVK VRFNGRHYDL PAWSISILPD CKTAVFNTAT VKEPTLLPKM HPVVWFSWQS YSEDTNSLDD SAFTKNGLVE
501: QLSMTWDKSD YLWYTTYVNI GANELPKNGQ WPELTIYSAG HSMQVFVNGK SYGSVYGGYE NPKLTYDGHV KMWQGSNKIS ILSSAVGLPN DGNHFERWNV
601: GVLGPVTVSG LNTGKRDLSH QKWTYQVGLK GESLGLHTVT GSSSVEWGGP GNKQPLTWHK ALFNAPAGSD PVALDMGSMG KGQMWVNGHH VGRYWSYKAP
701: SGGCGRCSYA GTYRQDKCRS NCGEPSQRWY HVPRSWLKPG GNLLVVLEEY GGDLAGVAMA TRRT

Best Arabidopsis Sequence Match ( AT3G13750.1 )
(BLAST)

001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA

Arabidopsis Description

BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.