Subcellular Localization
min:
: max
Winner_takes_all: golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 7
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400075691 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13750.1 | PGSC0003DMT400075691 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g062580.2.1 | Tomato | nucleus | 98.21 | 98.1 |
| PGSC0003DMT400006654 | Potato | golgi, vacuole | 85.36 | 85.56 |
| PGSC0003DMT400083896 | Potato | extracellular | 82.14 | 82.63 |
| VIT_09s0002g02120.t01 | Wine grape | golgi, vacuole | 78.57 | 78.48 |
| KRH10007 | Soybean | nucleus | 77.98 | 77.98 |
| KRH23324 | Soybean | vacuole | 77.5 | 77.41 |
| KRH44153 | Soybean | nucleus | 76.79 | 76.51 |
| Bra027403.1-P | Field mustard | golgi, vacuole | 76.31 | 76.4 |
| AT3G13750.1 | Thale cress | golgi, vacuole | 77.02 | 76.39 |
| CDX97513 | Canola | golgi, vacuole | 76.31 | 76.31 |
| CDY51738 | Canola | golgi, vacuole | 76.19 | 76.28 |
| CDY23637 | Canola | golgi, vacuole | 75.95 | 76.04 |
| CDY37486 | Canola | golgi, vacuole | 75.83 | 75.92 |
| KRH47126 | Soybean | nucleus | 76.31 | 75.86 |
| Bra021506.1-P | Field mustard | vacuole | 76.19 | 74.33 |
| PGSC0003DMT400000899 | Potato | nucleus, peroxisome, vacuole | 56.79 | 71.19 |
| GSMUA_Achr7P08970_001 | Banana | vacuole | 61.31 | 70.55 |
| GSMUA_Achr6P35850_001 | Banana | golgi, vacuole | 68.69 | 70.02 |
| GSMUA_Achr7P08950_001 | Banana | golgi, vacuole | 61.07 | 69.7 |
| OQU87043 | Sorghum | golgi, vacuole | 68.45 | 69.53 |
| GSMUA_Achr6P00880_001 | Banana | golgi, vacuole | 60.71 | 69.48 |
| Os01t0580200-01 | Rice | golgi, vacuole | 68.21 | 69.29 |
| GSMUA_Achr7P08960_001 | Banana | endoplasmic reticulum, golgi, vacuole | 60.6 | 69.16 |
| Zm00001d044290_P005 | Maize | golgi, vacuole | 68.21 | 69.04 |
| GSMUA_Achr7P08940_001 | Banana | vacuole | 59.88 | 68.72 |
| TraesCS3D01G211500.2 | Wheat | golgi, vacuole | 68.21 | 68.62 |
| TraesCS3A01G208600.1 | Wheat | plastid | 68.1 | 68.5 |
| HORVU3Hr1G050450.12 | Barley | golgi, vacuole | 67.74 | 68.47 |
| TraesCS3B01G235100.1 | Wheat | golgi, vacuole | 68.1 | 68.34 |
| PGSC0003DMT400079498 | Potato | vacuole | 56.9 | 65.75 |
| PGSC0003DMT400009496 | Potato | nucleus, peroxisome, vacuole | 42.26 | 65.62 |
| TraesCS7B01G264200.1 | Wheat | plasma membrane, vacuole | 56.07 | 65.6 |
| Os06t0573600-01 | Rice | plasma membrane, vacuole | 55.83 | 65.59 |
| TraesCS7D01G359500.1 | Wheat | golgi | 55.95 | 65.55 |
| Os02t0219200-01 | Rice | peroxisome, vacuole | 38.93 | 65.4 |
| TraesCS7A01G363600.1 | Wheat | plasma membrane, vacuole | 55.83 | 65.32 |
| EER88554 | Sorghum | golgi, vacuole | 56.31 | 65.24 |
| TraesCS6A01G185400.1 | Wheat | golgi, vacuole | 56.19 | 65.19 |
| Zm00001d046357_P001 | Maize | extracellular | 55.95 | 65.1 |
| TraesCS6B01G214100.1 | Wheat | golgi, vacuole | 55.95 | 64.83 |
| TraesCS6D01G172400.1 | Wheat | golgi, vacuole | 55.71 | 64.55 |
| EES06516 | Sorghum | mitochondrion, plastid | 56.43 | 64.05 |
| PGSC0003DMT400011458 | Potato | cytosol, nucleus, peroxisome | 33.69 | 63.31 |
| HORVU7Hr1G086690.2 | Barley | plasma membrane, vacuole | 55.83 | 62.78 |
| PGSC0003DMT400009096 | Potato | endoplasmic reticulum, golgi, vacuole | 62.74 | 62.37 |
| HORVU6Hr1G039490.6 | Barley | plastid | 56.31 | 61.91 |
| GSMUA_Achr2P16780_001 | Banana | plastid | 60.36 | 60.29 |
| Zm00001d053585_P002 | Maize | plastid | 55.83 | 56.57 |
| PGSC0003DMT400020941 | Potato | extracellular | 55.24 | 54.46 |
| PGSC0003DMT400057597 | Potato | golgi, vacuole | 40.36 | 48.92 |
| PGSC0003DMT400039333 | Potato | extracellular, golgi | 48.45 | 48.68 |
| PGSC0003DMT400059880 | Potato | cytosol | 43.69 | 47.66 |
| PGSC0003DMT400067956 | Potato | extracellular | 49.88 | 46.97 |
| PGSC0003DMT400023851 | Potato | nucleus, peroxisome, vacuole | 40.48 | 46.96 |
| PGSC0003DMT400023852 | Potato | extracellular | 35.12 | 46.9 |
| PGSC0003DMT400031178 | Potato | vacuole | 43.69 | 44.27 |
| PGSC0003DMT400015841 | Potato | endoplasmic reticulum, golgi, vacuole | 41.67 | 43.26 |
Protein Annotations
| KEGG:00052+3.2.1.23 | KEGG:00511+3.2.1.23 | KEGG:00531+3.2.1.23 | KEGG:00600+3.2.1.23 | KEGG:00604+3.2.1.23 | EntrezGene:102586985 |
| Gene3D:2.60.120.260 | Gene3D:2.60.120.740 | MapMan:21.3.2.2.2 | Gene3D:3.20.20.80 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004553 | GO:GO:0004565 | GO:GO:0005488 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016787 | GO:GO:0016798 | GO:GO:0030246 | InterPro:Galactose-bd-like_sf | InterPro:Gly_Hdrlase_35_cat | InterPro:Glyco_hydro_35_CS |
| InterPro:Glycoside_Hdrlase_35 | InterPro:Glycoside_hydrolase_SF | InterPro:IPR000922 | InterPro:IPR008979 | InterPro:Lectin_gal-bd_dom | UniProt:M1A147 |
| PFAM:PF01301 | PFAM:PF02140 | EnsemblPlantsGene:PGSC0003DMG400004842 | PGSC:PGSC0003DMG400004842 | EnsemblPlants:PGSC0003DMT400012359 | PRINTS:PR00742 |
| ScanProsite:PS01182 | PFscan:PS50228 | PANTHER:PTHR23421 | PANTHER:PTHR23421:SF74 | SUPFAM:SSF49785 | SUPFAM:SSF51445 |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000296B98B | RefSeq:XP_006357461.2 | SEG:seg | : |
Description
Beta-galactosidase [Source:PGSC_GENE;Acc:PGSC0003DMG400004842]
Coordinates
chr6:-:48799787..48806874
Molecular Weight (calculated)
93416.2 Da
IEP (calculated)
7.922
GRAVY (calculated)
-0.238
Length
840 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSRLVRLNV LLMLLALLGS WVFSGMCSVS YDRNAIIVNG QRRILVSGSI HYPRSTPEMW PDLIQKAKEG GVDVIQTYVF WNGHEPEQGK YYFEERYDLV
101: KFIKIVHQAG LYVHLRVGPY ACAEWNFGGF PVWLKYVPGI SFRTDNEPFK SAMQKFTTKI VNMMKAERLY ESQGGPIILS QIENEYGPIE KRLGEPGKSY
201: SDWAAKMALD LGTGVPWVMC KQDDAPDPVI NTCNGFYCDY FSPNKAYKPK IWTEAWTAWF TEFGGPIPYR PVEDLAFGVA KFIQNGGSFI NYYMYHGGTN
301: FGRTAGGPFI ATSYDYDAPL DEFGLLRQPK WGHLKDLHRA IKLCEPALVS GDPTVTSLGN FQEAHVFSSK SGVCAAFLAN YNQHSFATVT FGNRHYNLPP
401: WSISILPDCK NTVYNTARVG AQSALMKMTP ADKGFSWQSY NDEPSSYEDS TFTVVGLLEQ INTTRDVSDY LWYMTDVKID PSEGFLRSGQ WPWLRVSSAG
501: PALHVFVNGQ LAGTVYGSLK SQKITFNKAV NLRAGVNKIS LLSIAVGLPN IGPHFETWNT GVLGPVSLSG LNEGKRDLAW QKWSYKVGLK GEALNLHSLS
601: GSSSVEWVEG SLVTQRQPLT WFKTTFNAPA GNEPLALDMN TMGKGQMWIN GQSLGRYWPG YKSSGTCSAC NYAGYFNENK CLSNCGEASQ RWYHVPRSWL
701: HPTGNLLVVF EEWGGDPNAI SLVKRELASV CADINEWQPQ LVNYKMQASG EVDRPLRPKA HLRCAPGQKI TSIKFASFGT PVGVCGSFSE GSCRAHHSYD
801: AFEKYCIGKE SCSVPVTPEI FGGDPCPGVM KKLSVEALCS
101: KFIKIVHQAG LYVHLRVGPY ACAEWNFGGF PVWLKYVPGI SFRTDNEPFK SAMQKFTTKI VNMMKAERLY ESQGGPIILS QIENEYGPIE KRLGEPGKSY
201: SDWAAKMALD LGTGVPWVMC KQDDAPDPVI NTCNGFYCDY FSPNKAYKPK IWTEAWTAWF TEFGGPIPYR PVEDLAFGVA KFIQNGGSFI NYYMYHGGTN
301: FGRTAGGPFI ATSYDYDAPL DEFGLLRQPK WGHLKDLHRA IKLCEPALVS GDPTVTSLGN FQEAHVFSSK SGVCAAFLAN YNQHSFATVT FGNRHYNLPP
401: WSISILPDCK NTVYNTARVG AQSALMKMTP ADKGFSWQSY NDEPSSYEDS TFTVVGLLEQ INTTRDVSDY LWYMTDVKID PSEGFLRSGQ WPWLRVSSAG
501: PALHVFVNGQ LAGTVYGSLK SQKITFNKAV NLRAGVNKIS LLSIAVGLPN IGPHFETWNT GVLGPVSLSG LNEGKRDLAW QKWSYKVGLK GEALNLHSLS
601: GSSSVEWVEG SLVTQRQPLT WFKTTFNAPA GNEPLALDMN TMGKGQMWIN GQSLGRYWPG YKSSGTCSAC NYAGYFNENK CLSNCGEASQ RWYHVPRSWL
701: HPTGNLLVVF EEWGGDPNAI SLVKRELASV CADINEWQPQ LVNYKMQASG EVDRPLRPKA HLRCAPGQKI TSIKFASFGT PVGVCGSFSE GSCRAHHSYD
801: AFEKYCIGKE SCSVPVTPEI FGGDPCPGVM KKLSVEALCS
001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA
Arabidopsis Description
BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]
SUBAcon: [golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.