Factsheet for PGSC0003DMT400000899

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, peroxisome, nucleus

Predictor Summary:

nucleus 2
golgi 1
vacuole 1
extracellular 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g008840.1.1	Tomato	extracellular	97.46	90.19
KRH37385	Soybean	nucleus	75.52	70.18
KRH12385	Soybean	vacuole	75.37	70.04
CDX76254	Canola	golgi, nucleus, vacuole	59.85	68.2
CDX94367	Canola	mitochondrion	70.0	65.87
Bra019644.1-P	Field mustard	golgi, plastid, vacuole	69.85	65.73
CDX88594	Canola	golgi, vacuole	31.79	65.54
AT5G56870.1	Thale cress	vacuole	70.75	65.47
GSMUA_Achr7P08970_001	Banana	vacuole	71.19	65.34
CDY69471	Canola	cytosol	40.3	64.9
GSMUA_Achr6P00880_001	Banana	golgi, vacuole	71.04	64.85
CDY11899	Canola	golgi, vacuole	69.85	64.82
CDY70594	Canola	cytosol	40.15	64.66
Bra006850.1-P	Field mustard	golgi, vacuole	69.55	64.54
CDX92753	Canola	golgi, vacuole	68.36	64.33
GSMUA_Achr7P08960_001	Banana	endoplasmic reticulum, golgi, vacuole	70.6	64.27
Bra013956.1-P	Field mustard	cytosol, mitochondrion, plastid, vacuole	70.15	64.21
GSMUA_Achr7P08940_001	Banana	vacuole	70.15	64.21
CDX95380	Canola	vacuole	69.55	64.1
GSMUA_Achr7P08950_001	Banana	golgi, vacuole	70.15	63.86
Os02t0219200-01	Rice	peroxisome, vacuole	47.46	63.6
CDY42755	Canola	vacuole	67.46	63.48
Bra019120.1-P	Field mustard	golgi, vacuole	67.46	63.48
AT4G26140.7	Thale cress	vacuole	70.45	62.68
CDY32919	Canola	golgi, vacuole	67.16	62.33
TraesCS7A01G363600.1	Wheat	plasma membrane, vacuole	66.57	62.12
Os06t0573600-01	Rice	plasma membrane, vacuole	66.12	61.96
TraesCS7D01G359500.1	Wheat	golgi	66.27	61.92
EER88554	Sorghum	golgi, vacuole	66.87	61.79
CDX89360	Canola	mitochondrion	64.33	61.66
Zm00001d046357_P001	Maize	extracellular	66.42	61.63
Bra035634.1-P	Field mustard	golgi, vacuole	66.42	61.63
CDY20708	Canola	golgi, vacuole	66.27	61.5
TraesCS6A01G185400.1	Wheat	golgi, vacuole	66.42	61.46
TraesCS7B01G264200.1	Wheat	plasma membrane, vacuole	65.82	61.42
PGSC0003DMT400009496	Potato	nucleus, peroxisome, vacuole	49.55	61.37
TraesCS6B01G214100.1	Wheat	golgi, vacuole	65.97	60.97
VIT_11s0016g02200.t01	Wine grape	vacuole	75.97	60.89
TraesCS6D01G172400.1	Wheat	golgi, vacuole	65.37	60.41
KRH19154	Soybean	golgi, mitochondrion, plastid, vacuole	75.52	60.31
KRH02714	Soybean	golgi, vacuole	75.52	60.31
EES06516	Sorghum	mitochondrion, plastid	66.12	59.86
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	39.85	59.73
PGSC0003DMT400079498	Potato	vacuole	64.78	59.7
HORVU7Hr1G086690.2	Barley	plasma membrane, vacuole	65.82	59.04
AT3G52840.2	Thale cress	golgi, vacuole	68.06	58.39
HORVU6Hr1G039490.6	Barley	plastid	66.57	58.38
PGSC0003DMT400083896	Potato	extracellular	71.79	57.6
Os01t0580200-01	Rice	golgi, vacuole	70.45	57.07
OQU87043	Sorghum	golgi, vacuole	70.15	56.83
PGSC0003DMT400012359	Potato	golgi, vacuole	71.19	56.79
PGSC0003DMT400006654	Potato	golgi, vacuole	70.75	56.56
Zm00001d044290_P005	Maize	golgi, vacuole	70.0	56.51
GSMUA_Achr6P35850_001	Banana	golgi, vacuole	69.4	56.43
HORVU3Hr1G050450.12	Barley	golgi, vacuole	69.25	55.84
TraesCS3A01G208600.1	Wheat	plastid	69.4	55.69
TraesCS3D01G211500.2	Wheat	golgi, vacuole	69.4	55.69
GSMUA_Achr2P16780_001	Banana	plastid	69.85	55.65
TraesCS3B01G235100.1	Wheat	golgi, vacuole	68.96	55.2
Zm00001d053585_P002	Maize	plastid	65.67	53.08
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	63.43	50.3
CDX76255	Canola	extracellular	8.66	45.31
PGSC0003DMT400023852	Potato	extracellular	42.39	45.15
PGSC0003DMT400020941	Potato	extracellular	56.12	44.13
PGSC0003DMT400059880	Potato	cytosol	49.1	42.73
PGSC0003DMT400023851	Potato	nucleus, peroxisome, vacuole	45.22	41.85
PGSC0003DMT400057597	Potato	golgi, vacuole	42.99	41.56
PGSC0003DMT400039333	Potato	extracellular, golgi	50.3	40.31
PGSC0003DMT400067956	Potato	extracellular	51.79	38.9
PGSC0003DMT400031178	Potato	vacuole	46.42	37.52
PGSC0003DMT400015841	Potato	endoplasmic reticulum, golgi, vacuole	43.88	36.34

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0004565
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Galactose-bd-like_sf
InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	UniProt:M0ZHI6
PFAM:PF01301	EnsemblPlantsGene:PGSC0003DMG400000339	PGSC:PGSC0003DMG400000339	EnsemblPlants:PGSC0003DMT400000899	PRINTS:PR00742	ScanProsite:PS01182
PANTHER:PTHR23421	PANTHER:PTHR23421:SF74	SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI000294EE85	SEG:seg

Description

Beta-galactosidase [Source:PGSC_GENE;Acc:PGSC0003DMG400000339]

Coordinates

chr12:-:3683175..3691514

Molecular Weight (calculated)

74567.3 Da

IEP (calculated)

8.672

GRAVY (calculated)

-0.382

Length

670 amino acids

Sequence
(BLAST)

001: MWPDLIQKAK DGGLDVIETY VFWNAHEPSP GKYNFEGRYD LVRFIKLAQR AGLYVNLRIG PYICAEWNFG GFPVWLKYVP GMEFRTDNQP FKVAMQGFVQ
101: KIVNMMKSEN LFEPQGGPII MAQIENEYGP VEWEIGAPGK AFTKWAAQMA VGLKTGVPWI MCKQEDAPDP VIDTCNGFYC EGFRPNKPYK PKMWTEVWTG
201: WYTKFGGPIP QRPAEDIAFS VARFVQNNGS FFNYYMYHGG TNFGRTSSGL FIATSYDYDA PLDEYGLLNE PKYGHLRDLH KAIKLSEPAL VSSYATVTSL
301: GSNQEAHVYR SKSGACAAFL SNYDSRYSVK VTFQNRPYDL PPWSISILPD CKTAVYNTAR VNSRSSSIKM TPAGGGLSWQ SYNEETPTAD DSDTLSANGL
401: WEQKNVTRDS SDYLWYMTDV NIASNEGFLK NGKDPYFTVM SAGHVLHVFV NGKLSGTVYG TLDNPKLTYS GNVKLRAGIN KISLLSVSVG LPNVGVHYDT
501: WNAGVLGPVT LSGLNEGSRN LAKQRWSYKV GLKGESLSLH SLSGSSSVEW IRGSLVAQKQ PLTWYKATFN APGGNEPLAL DMASMGKGQI WINGEGVGRH
601: WPGYIAQGDC SKCSYAGTFN EKKCQTNCGQ PSQRWYHVPR SWLKPSGNLL VVFEEWGGNP TGISLVRRSR

Best Arabidopsis Sequence Match ( AT4G26140.1 )
(BLAST)

001: MGLNFREKAW ILLGILCCSS LICSVKAIVT YDRKAVIING QRRILLSGSI HYPRSTPEMW PDLIQKAKDG GLDVIQTYVF WNGHEPSPGQ YYFEDRYDLV
101: KFIKVVQQAG LYVHLRIGPY VCAEWNFGGF PVWLKYVPGM VFRTDNEPFK AAMQKFTEKI VRMMKEEKLF ETQGGPIILS QIENEYGPIE WEIGAPGKAY
201: TKWVAEMAQG LSTGVPWIMC KQDDAPNSII NTCNGFYCEN FKPNSDNKPK MWTENWTGWF TEFGGAVPYR PAEDIALSVA RFIQNGGSFI NYYMYHGGTN
301: FDRTAGEFIA TSYDYDAPLD EYGLPREPKY SHLKRLHKVI KLCEPALVSA DPTVTSLGDK QEAHVFKSKS SCAAFLSNYN TSSAARVLFG GSTYDLPPWS
401: VSILPDCKTE YYNTAKVQVR TSSIHMKMVP TNTPFSWGSY NEEIPSANDN GTFSQDGLVE QISITRDKTD YFWYLTDITI SPDEKFLTGE DPLLTIGSAG
501: HALHVFVNGQ LAGTAYGSLE KPKLTFSQKI KLHAGVNKLA LLSTAAGLPN VGVHYETWNT GVLGPVTLNG VNSGTWDMTK WKWSYKIGTK GEALSVHTLA
601: GSSTVEWKEG SLVAKKQPLT WYKSTFDSPT GNEPLALDMN TMGKGQMWIN GQNIGRHWPA YTARGKCERC SYAGTFTEKK CLSNCGEASQ RWYHVPRSWL
701: KPTNNLVIVL EEWGGEPNGI SLVKRTAK

Arabidopsis Description

BGAL12beta-galactosidase 12 [Source:TAIR;Acc:AT4G26140]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.