Factsheet for PGSC0003DMT400011458

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
golgi 1
plastid 2
cytosol 1
extracellular 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69471	Canola	cytosol	45.64	49.04
CDY70594	Canola	cytosol	45.19	48.56
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	59.73	39.85
Os02t0219200-01	Rice	peroxisome, vacuole	43.85	39.2
VIT_11s0016g02200.t01	Wine grape	vacuole	69.35	37.08
KRH19154	Soybean	golgi, mitochondrion, plastid, vacuole	69.35	36.95
KRH02714	Soybean	golgi, vacuole	68.46	36.47
CDX76254	Canola	golgi, nucleus, vacuole	47.2	35.88
Os01t0580200-01	Rice	golgi, vacuole	66.22	35.79
OQU87043	Sorghum	golgi, vacuole	64.88	35.07
HORVU3Hr1G050450.12	Barley	golgi, vacuole	65.1	35.02
PGSC0003DMT400006654	Potato	golgi, vacuole	65.55	34.96
PGSC0003DMT400083896	Potato	extracellular	65.1	34.85
Zm00001d044290_P005	Maize	golgi, vacuole	64.65	34.82
TraesCS3D01G211500.2	Wheat	golgi, vacuole	64.21	34.37
TraesCS3B01G235100.1	Wheat	golgi, vacuole	63.98	34.17
TraesCS3A01G208600.1	Wheat	plastid	63.53	34.01
PGSC0003DMT400012359	Potato	golgi, vacuole	63.31	33.69
GSMUA_Achr6P35850_001	Banana	golgi, vacuole	61.52	33.37
KRH37385	Soybean	nucleus	52.57	32.59
KRH12385	Soybean	vacuole	52.13	32.32
PGSC0003DMT400009496	Potato	nucleus, peroxisome, vacuole	36.24	29.94
GSMUA_Achr6P00880_001	Banana	golgi, vacuole	48.77	29.7
CDX89360	Canola	mitochondrion	46.31	29.61
GSMUA_Achr7P08970_001	Banana	vacuole	48.32	29.59
Bra019644.1-P	Field mustard	golgi, plastid, vacuole	46.98	29.49
GSMUA_Achr7P08960_001	Banana	endoplasmic reticulum, golgi, vacuole	48.32	29.35
GSMUA_Achr7P08940_001	Banana	vacuole	47.87	29.23
CDX94367	Canola	mitochondrion	46.53	29.21
CDX92753	Canola	golgi, vacuole	45.86	28.79
AT5G56870.1	Thale cress	vacuole	46.53	28.73
CDX95380	Canola	vacuole	46.31	28.47
CDY42755	Canola	vacuole	45.19	28.37
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	53.47	28.28
Bra013956.1-P	Field mustard	cytosol, mitochondrion, plastid, vacuole	46.31	28.28
GSMUA_Achr7P08950_001	Banana	golgi, vacuole	46.53	28.26
Os06t0573600-01	Rice	plasma membrane, vacuole	45.19	28.25
Bra019120.1-P	Field mustard	golgi, vacuole	44.97	28.23
EER88554	Sorghum	golgi, vacuole	45.64	28.14
CDY11899	Canola	golgi, vacuole	45.41	28.12
Bra006850.1-P	Field mustard	golgi, vacuole	45.19	27.98
AT4G26140.7	Thale cress	vacuole	46.98	27.89
TraesCS7A01G363600.1	Wheat	plasma membrane, vacuole	44.3	27.58
Zm00001d046357_P001	Maize	extracellular	44.52	27.56
TraesCS7D01G359500.1	Wheat	golgi	44.07	27.48
TraesCS7B01G264200.1	Wheat	plasma membrane, vacuole	43.62	27.16
TraesCS6A01G185400.1	Wheat	golgi, vacuole	43.85	27.07
Bra035634.1-P	Field mustard	golgi, vacuole	43.62	27.01
CDY20708	Canola	golgi, vacuole	43.62	27.01
PGSC0003DMT400079498	Potato	vacuole	43.85	26.96
CDY32919	Canola	golgi, vacuole	43.4	26.87
AT3G52840.2	Thale cress	golgi, vacuole	46.76	26.76
TraesCS6D01G172400.1	Wheat	golgi, vacuole	43.4	26.76
TraesCS6B01G214100.1	Wheat	golgi, vacuole	43.4	26.76
EES06516	Sorghum	mitochondrion, plastid	44.3	26.76
HORVU7Hr1G086690.2	Barley	plasma membrane, vacuole	43.62	26.1
HORVU6Hr1G039490.6	Barley	plastid	44.52	26.05
GSMUA_Achr2P16780_001	Banana	plastid	48.77	25.92
PGSC0003DMT400057597	Potato	golgi, vacuole	37.58	24.24
PGSC0003DMT400023851	Potato	nucleus, peroxisome, vacuole	39.15	24.17
Zm00001d053585_P002	Maize	plastid	44.3	23.88
PGSC0003DMT400020941	Potato	extracellular	44.97	23.59
PGSC0003DMT400059880	Potato	cytosol	37.14	21.56
PGSC0003DMT400023852	Potato	extracellular	30.2	21.46
PGSC0003DMT400039333	Potato	extracellular, golgi	39.6	21.17
PGSC0003DMT400067956	Potato	extracellular	40.94	20.52
PGSC0003DMT400015841	Potato	endoplasmic reticulum, golgi, vacuole	35.57	19.65
PGSC0003DMT400031178	Potato	vacuole	36.02	19.42
CDX88594	Canola	golgi, vacuole	0.22	0.31
CDX76255	Canola	extracellular	0.0	0.0

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0030246	InterPro:Galactose-bd-like_sf
InterPro:Glycoside_Hdrlase_35	InterPro:IPR000922	InterPro:IPR008979	InterPro:Lectin_gal-bd_dom	UniProt:M0ZZK9	PFAM:PF02140
EnsemblPlantsGene:PGSC0003DMG400004496	PGSC:PGSC0003DMG400004496	EnsemblPlants:PGSC0003DMT400011458	PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF74
SUPFAM:SSF49785	UniParc:UPI0002957B00	:	:	:	:

Description

Beta-galactosidase [Source:PGSC_GENE;Acc:PGSC0003DMG400004496]

Coordinates

chr7:+:34751415..34755375

Molecular Weight (calculated)

48900.9 Da

IEP (calculated)

6.573

GRAVY (calculated)

-0.360

Length

447 amino acids

Sequence
(BLAST)

001: MQYDLPPWSI SILPDCRTAV YNTARISSQS SQMKMTPIGG GLSWESYTEE TPSADDSDTL STSGLWEQIN VTRDSSDYLW YMTDVSIASD EGFLKNEKES
101: LLTVMSAGHA LHVFINGQLS GAVYGGLENP KLTYSGNVKL RAGINKISML SVAVGLPNVG LHFETWNAGV LGPITLSGLN EGTRDLTKQR WAYKVGMKGE
201: MLSLHTLSGS SSVKWVKDLL LAQKQPLTWY KATFDAPEGN DPLALDMGSM GKGQIWINGE GVGRHWPGYI ARGDCGECNY AGLYSETKCQ TNCEKPSQRW
301: YHVPRSWLKP RGNLLVMFEE WGGEPEGISL AKRSTTRVCA DIVEGQPSLK SWHMATSGKS NSLQLKAHLR CPAELKISDI QFASYGLPQG TCGNYHESSC
401: HAHKSNDAFE KNCIGQQSCS VNVVPEIFGG DPCPNTSKKL AVEAMCS

Best Arabidopsis Sequence Match ( AT3G13750.1 )
(BLAST)

001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA

Arabidopsis Description

BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.