Factsheet for PGSC0003DMT400023852

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

extracellular: 24773703

msms PMID: 24773703 doi

T Bengtsson, D Weighill, E Proux-Wéra, F Levander, S Resjö, DD Burra, LI Moushib, PE Hedley, E Liljeroth, D Jacobson, E Alexandersson, E Andreasson

Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Box 102, SE-230 53 Alnarp, Sweden. erik.alexandersson@slu.se.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g018500.1.1	Tomato	cytosol, golgi, vacuole	92.05	83.31
PGSC0003DMT400023851	Potato	nucleus, peroxisome, vacuole	69.0	59.94
KRH53267	Soybean	golgi, vacuole	61.21	55.24
KRH64633	Soybean	vacuole	60.89	55.03
VIT_18s0001g02220.t01	Wine grape	vacuole	64.07	49.57
VIT_18s0001g02230.t01	Wine grape	golgi, vacuole	62.96	48.23
AT1G77410.3	Thale cress	golgi, vacuole	61.05	46.83
Os05t0428100-00	Rice	golgi, vacuole	55.96	43.4
GSMUA_Achr11P...	Banana	golgi, vacuole	55.96	43.08
TraesCS1B01G278400.1	Wheat	plastid	55.96	42.72
TraesCS1A01G267700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	55.8	42.6
HORVU3Hr1G081980.9	Barley	cytosol, vacuole	51.03	42.57
TraesCS1D01G267600.2	Wheat	endoplasmic reticulum, extracellular, vacuole	55.48	42.56
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	45.15	42.39
PGSC0003DMT400079498	Potato	vacuole	48.97	42.37
Zm00001d010212_P002	Maize	endoplasmic reticulum, extracellular, golgi	55.17	42.32
KXG22057	Sorghum	vacuole	55.64	41.87
HORVU1Hr1G065290.7	Barley	vacuole	54.37	41.61
TraesCS3A01G386100.3	Wheat	vacuole	52.94	40.07
Zm00001d042656_P001	Maize	golgi, vacuole	44.52	39.89
TraesCS3B01G418200.1	Wheat	vacuole	52.46	39.62
PGSC0003DMT400009496	Potato	nucleus, peroxisome, vacuole	34.02	39.56
TraesCS3D01G379100.3	Wheat	vacuole	52.62	38.99
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	48.97	36.45
PGSC0003DMT400006654	Potato	golgi, vacuole	48.01	36.04
PGSC0003DMT400015841	Potato	endoplasmic reticulum, golgi, vacuole	46.26	35.97
PGSC0003DMT400031178	Potato	vacuole	46.9	35.59
PGSC0003DMT400083896	Potato	extracellular	47.22	35.57
PGSC0003DMT400012359	Potato	golgi, vacuole	46.9	35.12
PGSC0003DMT400039333	Potato	extracellular, golgi	45.95	34.57
PGSC0003DMT400020941	Potato	extracellular	45.79	33.8
PGSC0003DMT400059880	Potato	cytosol	40.7	33.25
PGSC0003DMT400067956	Potato	extracellular	44.67	31.5
PGSC0003DMT400057597	Potato	golgi, vacuole	34.02	30.88
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	21.46	30.2

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat
InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	UniProt:M1AJ25	PFAM:PF01301	EnsemblPlantsGene:PGSC0003DMG402009228
PGSC:PGSC0003DMG402009228	EnsemblPlants:PGSC0003DMT400023852	PRINTS:PR00742	PANTHER:PTHR23421	PANTHER:PTHR23421:SF118	SUPFAM:SSF49785
SUPFAM:SSF51445	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002963F8F	SEG:seg	:

Description

Beta-galactosidase [Source:PGSC_GENE;Acc:PGSC0003DMG402009228]

Coordinates

chr11:-:8562923..8569721

Molecular Weight (calculated)

70233.8 Da

IEP (calculated)

5.001

GRAVY (calculated)

-0.234

Length

629 amino acids

Sequence
(BLAST)

001: MDISWSVAVA LLVVMVMVVS TGGANVSYDG RSLMIDGERK MLFSGSIHYP RSTPDMWPSL ISKAKEGGID VIETYVFWNL HEPQPGQYDF SGRRDIVAFI
101: KQIQAQGLYA CLRIGPYIEG EWTYGGFPFW LHDVPGVVFR SNNEPFKIEN EYQNVEKAFG EDGPPYVSWA AEMAVGLQTG VPWCMCKQDD APDPVINACN
201: GLRCGETFTG PNSPNKPSIW TENWTSFCFI IHRLTRFSGW LHYQYHGGTN FGRTAAEYMI TSYYDQAPLD EYDNLNLKAY KHYTIQAYVF SGDSGACAAF
301: LVNMDNTKSV VVQFQNSSYE LPRKSISILP DCKTVAFNTA KVSTQFNTRI TIPAIKFDAA EKWEQFEEVI PQFDATTLRS DVLLEHMNTT KDVSDYLWYT
401: SSIQQDSMEQ QSTLSVKSLG HVLHAFVNGE HVGSLHGRFR NTAFTLEGAV SLNEGTNNIS LLSATVGLPD SGSFLERRAL GVESVIIQDS KEAKNITNLS
501: WGYQVGLLGE KLQIYSLEES KSVNWSSLGS SQPLTWYKSV FDAPKGDDPV ALNLGSMGKG EAWVNGQSIG RYWVSFRTLA GIPSQTWYHV PRSFLQPGDN
601: LLVLFEEETG NPLDITVDTI SVTKPSLRK

Best Arabidopsis Sequence Match ( AT1G77410.1 )
(BLAST)

001: MTTFQYSLVF LVLMAVIVAG DVANVTYDGR SLIIDGEHKI LFSGSIHYTR STPQMWPSLI AKAKSGGIDV VDTYVFWNVH EPQQGQFDFS GSRDIVKFIK
101: EVKNHGLYVC LRIGPFIQGE WSYGGLPFWL HNVQGIVFRT DNEPFKYHMK RYAKMIVKLM KSENLYASQG GPIILSQIEN EYGMVGRAFR QEGKSYVKWT
201: AKLAVELDTG VPWVMCKQDD APDPLVNACN GRQCGETFKG PNSPNKPAIW TENWTSFYQT YGEEPLIRSA EDIAFHVALF IAKNGSFVNY YMYHGGTNFG
301: RNASQFVITS YYDQAPLDEY GLLRQPKWGH LKELHAAVKL CEEPLLSGLQ TTISLGKLQT AFVFGKKANL CAAILVNQDK CESTVQFRNS SYRLSPKSVS
401: VLPDCKNVAF NTAKVNAQYN TRTRKARQNL SSPQMWEEFT ETVPSFSETS IRSESLLEHM NTTQDTSDYL WQTTRFQQSE GAPSVLKVNH LGHALHAFVN
501: GRFIGSMHGT FKAHRFLLEK NMSLNNGTNN LALLSVMVGL PNSGAHLERR VVGSRSVKIW NGRYQLYFNN YSWGYQVGLK GEKFHVYTED GSAKVQWKQY
601: RDSKSQPLTW YKASFDTPEG EDPVALNLGS MGKGEAWVNG QSIGRYWVSF HTYKGNPSQI WYHIPRSFLK PNSNLLVILE EEREGNPLGI TIDTVSVTEV
701: CGHVSNTNPH PVISPRKKGL NRKNLTYRYD RKPKVQLQCP TGRKISKILF ASFGTPNGSC GSYSIGSCHS PNSLAVVQKA CLKKSRCSVP VWSKTFGGDS
801: CPHTVKSLLV RAQCS

Arabidopsis Description

BGAL16beta-galactosidase 16 [Source:TAIR;Acc:AT1G77410]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.