Factsheet for VIT_18s0001g02220.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

nucleus 2
golgi 5
extracellular 5
endoplasmic reticulum 4
vacuole 6
plasma membrane 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g02230.t01	Wine grape	golgi, vacuole	71.71	71.01
VIT_07s0031g02590.t01	Wine grape	extracellular, golgi, vacuole	38.01	67.03
Solyc11g018500.1.1	Tomato	cytosol, golgi, vacuole	57.2	66.91
KRH53267	Soybean	golgi, vacuole	56.09	65.42
KRH64633	Soybean	vacuole	55.6	64.94
Solyc11g018490.1.1	Tomato	cytosol	59.78	64.37
PGSC0003DMT400023851	Potato	nucleus, peroxisome, vacuole	57.32	64.36
PGSC0003DMT400023852	Potato	extracellular	49.57	64.07
AT1G77410.3	Thale cress	golgi, vacuole	61.99	61.46
GSMUA_Achr11P...	Banana	golgi, vacuole	58.18	57.89
TraesCS1D01G267600.2	Wheat	endoplasmic reticulum, extracellular, vacuole	57.07	56.59
TraesCS1B01G278400.1	Wheat	plastid	56.95	56.19
TraesCS1A01G267700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	56.83	56.07
Os05t0428100-00	Rice	golgi, vacuole	55.72	55.86
HORVU1Hr1G065290.7	Barley	vacuole	56.46	55.84
HORVU3Hr1G081980.9	Barley	cytosol, vacuole	50.8	54.77
Zm00001d010212_P002	Maize	endoplasmic reticulum, extracellular, golgi	55.23	54.76
KXG22057	Sorghum	vacuole	55.6	54.07
Zm00001d042656_P001	Maize	golgi, vacuole	46.25	53.56
TraesCS3B01G418200.1	Wheat	vacuole	53.75	52.46
TraesCS3A01G386100.3	Wheat	vacuole	53.38	52.23
TraesCS3D01G379100.3	Wheat	vacuole	53.63	51.35
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	49.57	47.92
VIT_03s0038g02360.t01	Wine grape	extracellular, golgi	48.59	47.42
VIT_04s0023g02690.t01	Wine grape	extracellular, golgi	48.95	47.1
VIT_11s0016g02200.t01	Wine grape	vacuole	48.22	46.89
VIT_06s0004g03020.t01	Wine grape	extracellular	48.34	46.45
VIT_18s0001g13230.t01	Wine grape	extracellular, golgi	48.22	45.9
VIT_03s0038g00150.t01	Wine grape	vacuole	48.59	45.77
VIT_07s0031g02480.t01	Wine grape	extracellular	47.6	45.69
VIT_11s0016g00680.t01	Wine grape	vacuole	43.3	42.16
VIT_08s0007g04270.t01	Wine grape	extracellular, golgi, vacuole	42.19	41.18

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	ProteinID:CCB45472	ProteinID:CCB45472.1	ncoils:Coil
UniProt:F6H0K0	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0004565
GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
GO:GO:0030246	GO:GO:0030312	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35
InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979	InterPro:Lectin_gal-bd_dom	PFAM:PF01301	PFAM:PF02140
PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF119	SUPFAM:SSF49785
SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI00015C7ADE	ArrayExpress:VIT_18s0001g02220	EnsemblPlantsGene:VIT_18s0001g02220	EnsemblPlants:VIT_18s0001g02220.t01

Description

Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:F6H0K0]

Coordinates

chr18:-:2592072..2601990

Molecular Weight (calculated)

90688.3 Da

IEP (calculated)

8.441

GRAVY (calculated)

-0.319

Length

813 amino acids

Sequence
(BLAST)

001: MGCWWWWWFA VLSSAVASVC GGEVTYDGRS LIINGQRKIL FSGSIHYPRS TPEMWPSLIS QAKQGGIDVI ETYVFWNQHE PKPGQYDFSG RRDIVRFIRE
101: VQAQGLYACL RIGPFIQAEW NYGGFPFWLH DVPGIVYRTD NEPFKFYMRN FTTKIVEIMK SENLYASQGG PIILQQIENE YKTVEANFGE AGKRYVLWAA
201: NMAVGLETGV PWVMCKQDDA PDPVINSCNG RLCGETFAGP NSPNKPAIWT ENWTSSYPLF GEDARPRPVE DIAFHVALFV AKMNGSFINY YMYHGGTNFG
301: RTASAYVQTA YYDEAPLDEY GLIQQPTWGH LKELHAAVKL CSETLLQGAQ SNLSLGTKLQ EAYVFRGQSG KCAAFLVNND SRTDVTVVFQ NTSYELPRKS
401: ISILPDCKNE AFNTAKASFR PGLISIQTVT KFNSTEQWEE YKESILNFDD TSSRANTLLE HMNTTKDASD YLWYTFRYNN DPSNGQSVLS TNSRAHALHA
501: FINGRHTGSQ HGSSSNLSFS LDNTVSFRAG INNVSLLSVM VGLPDSGAYL ERRVAGLRRV RIQSNGSLKD FTNNPWGYQV GLLGEKLQIY TDVGSQKVQW
601: SKFGSSTSGL LTWYKTVFDA PAGNEPVALN LVSMRKGEVW VNGQSIGRYW VSFLTPSGKP SQIWYHIPRS FLKPTGNLLV LLEEETGHPV GISIGKVSIP
701: KICGHVSESH LPPVISRVIY KKHENHHGRR PKVQLRCPSN RNISRILFAS FGTPSGDCQS YAVGSCHSSN SRSNVEKACL GKGMCSVPLS YKRFGGDPCP
801: GTPKALLVDV QCT

Best Arabidopsis Sequence Match ( AT1G77410.1 )
(BLAST)

001: MTTFQYSLVF LVLMAVIVAG DVANVTYDGR SLIIDGEHKI LFSGSIHYTR STPQMWPSLI AKAKSGGIDV VDTYVFWNVH EPQQGQFDFS GSRDIVKFIK
101: EVKNHGLYVC LRIGPFIQGE WSYGGLPFWL HNVQGIVFRT DNEPFKYHMK RYAKMIVKLM KSENLYASQG GPIILSQIEN EYGMVGRAFR QEGKSYVKWT
201: AKLAVELDTG VPWVMCKQDD APDPLVNACN GRQCGETFKG PNSPNKPAIW TENWTSFYQT YGEEPLIRSA EDIAFHVALF IAKNGSFVNY YMYHGGTNFG
301: RNASQFVITS YYDQAPLDEY GLLRQPKWGH LKELHAAVKL CEEPLLSGLQ TTISLGKLQT AFVFGKKANL CAAILVNQDK CESTVQFRNS SYRLSPKSVS
401: VLPDCKNVAF NTAKVNAQYN TRTRKARQNL SSPQMWEEFT ETVPSFSETS IRSESLLEHM NTTQDTSDYL WQTTRFQQSE GAPSVLKVNH LGHALHAFVN
501: GRFIGSMHGT FKAHRFLLEK NMSLNNGTNN LALLSVMVGL PNSGAHLERR VVGSRSVKIW NGRYQLYFNN YSWGYQVGLK GEKFHVYTED GSAKVQWKQY
601: RDSKSQPLTW YKASFDTPEG EDPVALNLGS MGKGEAWVNG QSIGRYWVSF HTYKGNPSQI WYHIPRSFLK PNSNLLVILE EEREGNPLGI TIDTVSVTEV
701: CGHVSNTNPH PVISPRKKGL NRKNLTYRYD RKPKVQLQCP TGRKISKILF ASFGTPNGSC GSYSIGSCHS PNSLAVVQKA CLKKSRCSVP VWSKTFGGDS
801: CPHTVKSLLV RAQCS

Arabidopsis Description

BGAL16beta-galactosidase 16 [Source:TAIR;Acc:AT1G77410]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.