Factsheet for VIT_09s0002g02120.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

nucleus 1
golgi 6
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13750.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44153	Soybean	nucleus	82.16	81.97
KRH47126	Soybean	nucleus	82.28	81.89
KRH10007	Soybean	nucleus	81.21	81.31
PGSC0003DMT400006654	Potato	golgi, vacuole	80.38	80.67
Solyc03g121540.2.1	Tomato	nucleus	80.26	80.55
Bra027403.1-P	Field mustard	golgi, vacuole	80.02	80.21
KRH23324	Soybean	vacuole	80.14	80.14
CDX97513	Canola	golgi, vacuole	80.02	80.12
CDY23637	Canola	golgi, vacuole	79.67	79.86
CDY51738	Canola	golgi, vacuole	79.55	79.74
CDY37486	Canola	golgi, vacuole	79.31	79.5
AT3G13750.1	Thale cress	golgi, vacuole	79.79	79.22
Solyc12g044880.1.1	Tomato	golgi, vacuole	78.6	79.16
PGSC0003DMT400083896	Potato	extracellular	78.36	78.92
PGSC0003DMT400012359	Potato	golgi, vacuole	78.48	78.57
Solyc06g062580.2.1	Tomato	nucleus	78.12	78.12
Bra021506.1-P	Field mustard	vacuole	79.43	77.58
GSMUA_Achr7P08970_001	Banana	vacuole	64.09	73.84
VIT_11s0016g02200.t01	Wine grape	vacuole	73.36	73.8
GSMUA_Achr6P00880_001	Banana	golgi, vacuole	63.73	73.02
GSMUA_Achr6P35850_001	Banana	golgi, vacuole	70.27	71.72
GSMUA_Achr7P08960_001	Banana	endoplasmic reticulum, golgi, vacuole	62.66	71.6
OQU87043	Sorghum	golgi, vacuole	70.27	71.46
Zm00001d044290_P005	Maize	golgi, vacuole	70.39	71.33
GSMUA_Achr7P08950_001	Banana	golgi, vacuole	62.19	71.06
Os01t0580200-01	Rice	golgi, vacuole	69.8	70.98
GSMUA_Achr7P08940_001	Banana	vacuole	61.59	70.77
TraesCS3A01G208600.1	Wheat	plastid	69.2	69.7
TraesCS3D01G211500.2	Wheat	golgi, vacuole	69.08	69.58
TraesCS3B01G235100.1	Wheat	golgi, vacuole	69.2	69.53
HORVU3Hr1G050450.12	Barley	golgi, vacuole	68.49	69.31
Os02t0219200-01	Rice	peroxisome, vacuole	40.67	68.4
TraesCS7B01G264200.1	Wheat	plasma membrane, vacuole	58.03	67.97
Zm00001d046357_P001	Maize	extracellular	58.26	67.87
Os06t0573600-01	Rice	plasma membrane, vacuole	57.67	67.83
TraesCS7D01G359500.1	Wheat	golgi	57.67	67.64
EER88554	Sorghum	golgi, vacuole	58.26	67.59
TraesCS6A01G185400.1	Wheat	golgi, vacuole	58.15	67.54
EES06516	Sorghum	mitochondrion, plastid	59.33	67.43
TraesCS6B01G214100.1	Wheat	golgi, vacuole	58.03	67.31
TraesCS6D01G172400.1	Wheat	golgi, vacuole	58.03	67.31
TraesCS7A01G363600.1	Wheat	plasma membrane, vacuole	57.43	67.27
HORVU6Hr1G039490.6	Barley	plastid	59.1	65.05
VIT_04s0023g02690.t01	Wine grape	extracellular, golgi	65.28	64.97
HORVU7Hr1G086690.2	Barley	plasma membrane, vacuole	57.31	64.52
VIT_18s0001g13230.t01	Wine grape	extracellular, golgi	64.92	63.93
GSMUA_Achr2P16780_001	Banana	plastid	62.43	62.43
VIT_03s0038g00150.t01	Wine grape	vacuole	63.85	62.22
Zm00001d053585_P002	Maize	plastid	58.74	59.59
VIT_06s0004g03020.t01	Wine grape	extracellular	57.67	57.33
VIT_07s0031g02590.t01	Wine grape	extracellular, golgi, vacuole	29.37	53.58
VIT_07s0031g02480.t01	Wine grape	extracellular	52.44	52.07
VIT_18s0001g02220.t01	Wine grape	vacuole	47.92	49.57
VIT_18s0001g02230.t01	Wine grape	golgi, vacuole	47.68	48.84
VIT_11s0016g00680.t01	Wine grape	vacuole	47.8	48.14
VIT_08s0007g04270.t01	Wine grape	extracellular, golgi, vacuole	46.97	47.42
VIT_03s0038g02360.t01	Wine grape	extracellular, golgi	45.3	45.74

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	EntrezGene:100265181
wikigene:100265181	Gene3D:2.60.120.260	Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	ProteinID:CBI35944
ProteinID:CBI35944.3	UniProt:D7TZZ8	EMBL:FN596494	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0004565	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505
GO:GO:0009506	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246
GO:GO:0030312	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF
InterPro:IPR000922	InterPro:IPR008979	EntrezGene:LOC100265181	wikigene:LOC100265181	InterPro:Lectin_gal-bd_dom	PFAM:PF01301
PFAM:PF02140	PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF74
SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI0001BE4B6F	ArrayExpress:VIT_09s0002g02120
EnsemblPlantsGene:VIT_09s0002g02120	EnsemblPlants:VIT_09s0002g02120.t01	unigene:Vvi.25597	RefSeq:XP_002279310	RefSeq:XP_002279310.2	SEG:seg

Description

Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:D7TZZ8]

Coordinates

chr9:+:1940794..1947293

Molecular Weight (calculated)

93169.8 Da

IEP (calculated)

8.102

GRAVY (calculated)

-0.236

Length

841 amino acids

Sequence
(BLAST)

001: MWEGLRAKTV SFLVVVVVLS SLVCWVTASV SYDRRAIVIN GQRRILISGS IHYPRSSPEM WPDLIQKAKE GGLDVIQTYV FWNGHEPSQG KYYFEGRYDL
101: VRFIKLVKQA GLYVNLRIGP YVCAEWNFGG FPVWLKYVQG INFRTNNEPF KWHMQRFTKK IVDMMKSEGL FESQGGPIIL SQIENEYGPM EYEIGAPGRA
201: YTEWAAKMAV GLGTGVPWVM CKQDDAPDPI INTCNGFYCD YFSPNKAYKP KMWTEAWTGW FTEFGGAVPH RPAEDLAFSV ARFIQKGGSF INYYMYHGGT
301: NFGRTAGGPF IATSYDYDAP LDEFGLLRQP KWGHLKDLHR AIKLCEPALI SGDPTVTSLG NYEEAHVFHS KSGACAAFLA NYNPRSYAKV SFRNMHYNLP
401: PWSISILPDC KNTVYNTARL GAQSATMKMT PVSGRFGWQS YNEETASYDD SSFAAVGLLE QINTTRDVSD YLWYSTDVKI GYNEGFLKSG RYPVLTVLSA
501: GHALHVFING RLSGTAYGSL ENPKLTFSQG VKLRAGVNTI ALLSIAVGLP NVGPHFETWN AGVLGPVSLN GLNEGRRDLS WQKWSYKVGL KGEALSLHSL
601: SGSSSVEWVE GSLMARGQPL TWYKTTFNAP GGNTPLALDM GSMGKGQIWI NGQNVGRYWP AYKATGGCGD CNYAGTYSEK KCLSNCGEPS QRWYHVPHSW
701: LSPTGNLLVV FEESGGNPAG ISLVEREIES VCADIYEWQP TLMNYEMQAS GKVNKPLRPK AHLWCAPGQK ISSIKFASFG TPEGVCGSYR EGSCHAHKSY
801: DAFERSCIGM NSCSVTVAPE IFGGDPCPSV MKKLSVEAIC S

Best Arabidopsis Sequence Match ( AT3G13750.1 )
(BLAST)

001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA

Arabidopsis Description

BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.