Factsheet for VIT_18s0001g13230.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 7
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15132	Soybean	mitochondrion, nucleus	67.21	78.42
VIT_04s0023g02690.t01	Wine grape	extracellular, golgi	77.05	77.87
KRH05876	Soybean	nucleus	66.74	77.87
KRH61101	Soybean	nucleus	65.69	76.22
PGSC0003DMT400009496	Potato	nucleus, peroxisome, vacuole	47.89	75.6
Solyc04g080840.1.1	Tomato	extracellular, golgi	63.47	73.74
VIT_03s0038g00150.t01	Wine grape	vacuole	74.36	73.58
Bra036334.1-P	Field mustard	golgi, vacuole	62.76	73.42
CDY53959	Canola	golgi, vacuole	62.65	73.29
AT1G45130.1	Thale cress	golgi, vacuole	62.76	73.22
GSMUA_Achr4P13580_001	Banana	golgi, vacuole	74.36	73.16
CDY47949	Canola	golgi, vacuole	62.53	73.15
GSMUA_Achr9P21610_001	Banana	extracellular, golgi	72.95	73.04
KRH51779	Soybean	vacuole	60.66	72.65
GSMUA_Achr4P06620_001	Banana	cytosol	54.57	72.36
CDY36028	Canola	plastid	60.07	72.05
Bra014036.1-P	Field mustard	plastid	59.95	71.91
Os03t0165400-01	Rice	vacuole	70.49	71.58
EER92805	Sorghum	vacuole	70.14	71.14
TraesCS4A01G022500.2	Wheat	golgi, vacuole	68.38	69.19
Zm00001d048440_P003	Maize	vacuole	70.37	69.16
TraesCS4B01G280900.1	Wheat	golgi, vacuole	68.38	69.11
TraesCS4D01G279400.4	Wheat	vacuole	68.5	68.99
HORVU4Hr1G074280.4	Barley	vacuole	67.92	68.48
VIT_11s0016g02200.t01	Wine grape	vacuole	64.29	65.67
Zm00001d027803_P002	Maize	golgi, plasma membrane, vacuole	70.26	65.36
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	63.93	64.92
VIT_06s0004g03020.t01	Wine grape	extracellular	53.51	54.02
VIT_07s0031g02590.t01	Wine grape	extracellular, golgi, vacuole	28.1	52.06
VIT_07s0031g02480.t01	Wine grape	extracellular	50.59	51.0
VIT_18s0001g02230.t01	Wine grape	golgi, vacuole	46.37	48.23
VIT_18s0001g02220.t01	Wine grape	vacuole	45.9	48.22
VIT_08s0007g04270.t01	Wine grape	extracellular, golgi, vacuole	45.08	46.22
VIT_11s0016g00680.t01	Wine grape	vacuole	45.08	46.11
VIT_03s0038g02360.t01	Wine grape	extracellular, golgi	42.15	43.22

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	EntrezGene:100232901
wikigene:100232901	Gene3D:2.60.120.260	Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	ProteinID:AAK81874
ProteinID:AAK81874.1	EMBL:AM430243	EMBL:AY043231	ProteinID:CAN78072	ProteinID:CAN78072.1	ProteinID:CBI19767
ProteinID:CBI19767.3	UniProt:E0CPF1	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0004565	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	GO:GO:0030246	GO:GO:0030312	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS
InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979	EntrezGene:LOC100232901	wikigene:LOC100232901
InterPro:Lectin_gal-bd_dom	PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228
PANTHER:PTHR23421	PANTHER:PTHR23421:SF79	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	TIGR:TC56838
TIGR:TC62360	UniParc:UPI00015C7AAF	ArrayExpress:VIT_18s0001g13230	EnsemblPlantsGene:VIT_18s0001g13230	EnsemblPlants:VIT_18s0001g13230.t01	unigene:Vvi.540

Description

Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:E0CPF1]

Coordinates

chr18:+:11286706..11293739

Molecular Weight (calculated)

94867.7 Da

IEP (calculated)

8.046

GRAVY (calculated)

-0.277

Length

854 amino acids

Sequence
(BLAST)

001: METSSVSKLF IFFFVPLMFL HSQLIQCSVT YDKKAIVING QRRILISGSI HYPRSTPDMW EDLIRKAKDG GLDVIDTYIF WNVHEPSPGN YNFEGRYDLV
101: RFIKTVQKVG LYVHLRIGPY VCAEWNFGGF PVWLKFVPGI SFRTNNEPFK MAMQGFTQKI VHMMKSENLF ASQGGPIILS QIENEYGPES RELGAAGHAY
201: INWAAKMAVG LDTGVPWVMC KEDDAPDPVI NACNGFYCDA FSPNKPYKPR IWTEAWSGWF TEFGGTIHRR PVQDLAFGVA RFIQNGGSFV NYYMYHGGTN
301: FGRSAGGPFI TTSYDYDAPI DEYGLIRQPK YGHLKELHKA IKLCEHAVVS ADPTVISLGS YQQAHVFSSG RGNCAAFLSN YNPKSSARVI FNNVHYDLPA
401: WSISILPDCR TVVFNTARVG VQTSHMRMFP TNSKLHSWET YGEDISSLGS SGTMTAGGLL EQINITRDST DYLWYMTSVN IDSSESFLRR GQTPTLTVQS
501: KGHAVHVFIN GQYSGSAYGT RENRKFTYTG AANLHAGTNR IALLSIAVGL PNVGLHFETW KTGILGPVLL HGIDQGKRDL SWQKWSYQVG LKGEAMNLVS
601: PNGVSAVEWV RGSLAAQGQQ PLKWYKAYFN APEGDEPLAL DMRSMGKGQV WINGQSIGRY WMAYAKGDCN VCSYSGTYRP PKCQHGCGHP TQRWYHVPRS
701: WLKPTQNLLI IFEELGGDAS KIALMKRAMK SVCADANEHH PTLENWHTES PSESEELHEA SVHLQCAPGQ SISTIMFASF GTPSGTCGSF QKGTCHAPNS
801: QAILEKNCIG QEKCSVPISN SYFGADPCPN VLKRLSVEAA CSPTVTTTTQ PDSR

Best Arabidopsis Sequence Match ( AT4G36360.1 )
(BLAST)

001: MREMGTGDSA SRLILWFCLG FLILGVGFVQ CGVTYDRKAL LINGQRRILF SGSIHYPRST PDMWEDLIQK AKDGGIDVIE TYVFWNLHEP SPGKYDFEGR
101: NDLVRFVKTI HKAGLYAHLR IGPYVCAEWN FGGFPVWLKY VPGISFRTDN EPFKRAMKGF TERIVELMKS ENLFESQGGP IILSQIENEY GRQGQLLGAE
201: GHNYMTWAAK MAIATETGVP WVMCKEDDAP DPVINTCNGF YCDSFAPNKP YKPLIWTEAW SGWFTEFGGP MHHRPVQDLA FGVARFIQKG GSFVNYYMYH
301: GGTNFGRTAG GPFVTTSYDY DAPIDEYGLI RQPKYGHLKE LHRAIKMCEK ALVSADPVVT SIGNKQQAHV YSAESGDCSA FLANYDTESA ARVLFNNVHY
401: NLPPWSISIL PDCRNAVFNT AKVGVQTSQM EMLPTDTKNF QWESYLEDLS SLDDSSTFTT HGLLEQINVT RDTSDYLWYM TSVDIGDSES FLHGGELPTL
501: IIQSTGHAVH IFVNGQLSGS AFGTRQNRRF TYQGKINLHS GTNRIALLSV AVGLPNVGGH FESWNTGILG PVALHGLSQG KMDLSWQKWT YQVGLKGEAM
601: NLAFPTNTPS IGWMDASLTV QKPQPLTWHK TYFDAPEGNE PLALDMEGMG KGQIWVNGES IGRYWTAFAT GDCSHCSYTG TYKPNKCQTG CGQPTQRWYH
701: VPRAWLKPSQ NLLVIFEELG GNPSTVSLVK RSVSGVCAEV SEYHPNIKNW QIESYGKGQT FHRPKVHLKC SPGQAIASIK FASFGTPLGT CGSYQQGECH
801: AATSYAILER KCVGKARCAV TISNSNFGKD PCPNVLKRLT VEAVCAPETS VSTWRP

Arabidopsis Description

BGAL3Beta-galactosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV9]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.