Factsheet for Zm00001d027803_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36360.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92805	Sorghum	vacuole	87.15	95.01
Zm00001d048440_P003	Maize	vacuole	86.93	91.83
Os03t0165400-01	Rice	vacuole	81.15	88.58
TraesCS4B01G280900.1	Wheat	golgi, vacuole	79.52	86.39
TraesCS4A01G022500.2	Wheat	golgi, vacuole	79.08	86.02
TraesCS4D01G279400.4	Wheat	vacuole	79.3	85.85
HORVU4Hr1G074280.4	Barley	vacuole	78.54	85.12
GSMUA_Achr4P06620_001	Banana	cytosol	54.68	77.95
GSMUA_Achr4P13580_001	Banana	golgi, vacuole	72.33	76.5
GSMUA_Achr9P21610_001	Banana	extracellular, golgi	70.59	75.97
VIT_04s0023g02690.t01	Wine grape	extracellular, golgi	65.69	71.36
KRH15132	Soybean	mitochondrion, nucleus	56.86	71.31
KRH76716	Soybean	nucleus	65.9	71.26
KRH61101	Soybean	nucleus	56.86	70.92
KRH28740	Soybean	nucleus	65.8	70.81
Solyc01g110000.2.1	Tomato	nucleus	55.99	70.7
PGSC0003DMT400009496	Potato	nucleus, peroxisome, vacuole	41.61	70.61
PGSC0003DMT400079498	Potato	vacuole	55.88	70.56
KRH05876	Soybean	nucleus	56.21	70.49
KRH08131	Soybean	nucleus	65.03	70.4
VIT_18s0001g13230.t01	Wine grape	extracellular, golgi	65.36	70.26
KRH69834	Soybean	extracellular, golgi	64.6	69.93
VIT_03s0038g00150.t01	Wine grape	vacuole	65.47	69.64
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	63.94	69.47
Solyc02g084720.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	63.94	69.47
AT1G45130.1	Thale cress	golgi, vacuole	55.34	69.4
CDX75569	Canola	golgi, vacuole	62.42	69.29
Bra036334.1-P	Field mustard	golgi, vacuole	55.01	69.18
CDY53959	Canola	golgi, vacuole	55.01	69.18
CDX69219	Canola	vacuole	61.98	69.05
Bra011677.1-P	Field mustard	golgi, vacuole	64.38	69.04
CDY47949	Canola	golgi, vacuole	54.9	69.04
Solyc04g080840.1.1	Tomato	extracellular, golgi	55.23	68.98
CDY36028	Canola	plastid	53.49	68.96
Bra014036.1-P	Field mustard	plastid	53.38	68.82
AT4G36360.1	Thale cress	endoplasmic reticulum, golgi, vacuole	63.51	68.11
CDY59693	Canola	vacuole	63.29	67.87
KRH51779	Soybean	vacuole	52.07	67.04
Zm00001d044290_P005	Maize	golgi, vacuole	57.95	64.1
Zm00001d046357_P001	Maize	extracellular	49.89	63.43
CDY59691	Canola	cytosol, nucleus, vacuole	23.42	61.08
CDY59725	Canola	cytosol	20.48	60.26
Bra017756.1-P	Field mustard	cytosol, nucleus, vacuole	19.39	58.55
Zm00001d053585_P002	Maize	plastid	48.37	53.56
Zm00001d028474_P002	Maize	vacuole	48.8	49.89
Zm00001d042654_P005	Maize	endoplasmic reticulum, golgi, vacuole	44.88	47.58
Zm00001d041880_P001	Maize	extracellular, plasma membrane	45.75	45.75
Zm00001d010212_P002	Maize	endoplasmic reticulum, extracellular, golgi	39.54	44.27
Zm00001d042656_P001	Maize	golgi, vacuole	33.44	43.73
Zm00001d043393_P001	Maize	extracellular	38.78	43.31
Zm00001d053225_P005	Maize	golgi, vacuole	37.47	40.66
Zm00001d032022_P003	Maize	golgi, vacuole	37.25	40.24
Zm00001d006243_P005	Maize	endoplasmic reticulum, golgi, vacuole	33.44	35.25
Zm00001d022621_P005	Maize	vacuole	32.79	33.67

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	UniProt:A0A1D6JPS0	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	GO:GO:0030246	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF
InterPro:IPR000922	InterPro:IPR008979	InterPro:Lectin_gal-bd_dom	ProteinID:ONL94009.1	PFAM:PF01301	PFAM:PF02140
PRINTS:PR00742	PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF51	SUPFAM:SSF49785	SUPFAM:SSF51445
SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI0008459A8D	EnsemblPlantsGene:Zm00001d027803	EnsemblPlants:Zm00001d027803_P002	EnsemblPlants:Zm00001d027803_T002
SEG:seg	:	:	:	:	:

Description

Beta-galactosidase

Coordinates

chr1:-:13905218..13911218

Molecular Weight (calculated)

100735.0 Da

IEP (calculated)

7.028

GRAVY (calculated)

-0.145

Length

918 amino acids

Sequence
(BLAST)

001: MGRWWPAALL GCAVAVVAVL AAAVVECAVT YDKKAVLIDG QRRILFSGSI HYPRSTPDVI SCILQNLSFF FSPLLPRGGG EFMAVVSCVL DAMLSKANCF
101: PTLAVPLYST SLLVLKRVLI VFLFHQMWEG LIQKAKDGGL DVIQTYVFWN GHEPTPGNYY FEERYDLVRF VKTVQKAGLF VHLRIGPYIC GEWNFGGFPV
201: WLKYVPGISF RTDNEPFKTA MQGFTEKIVG MMKSENLFAS QGGPIILSQA TNSQIENEYG PEGKEFGAAG QAYINWAAKM AVGLDTGVPW VMCKEEDAPD
301: PVINACNGFY CDAFSPNKPY KPTMWTEAWS GWFTEFGGTI RQRPVEDLAF AVARFVQKGG SFINYYMYHG GTNFGRTAGG PFITTSYDYD APIDEYGLIR
401: EPKHSHLKEL HRAVKLCEQA LVSVDPTITT LGTMQEAHVF RSPSGCAAFL ANYNSNSHAK VVFNNEQYSL PPWSISILPD CKNVVFNSAT VGVQTSQMQM
501: WGDGATSMMW ERYDEEVDSL AAAPLLTTTG LLEQLNVTRD SSDYLWYITS VDISPSENFL QGGGKPPSLS VQSAGHALHV FVNGQLQGSS YGTREDRRIK
601: YNGNVNLRAG TNKIALLSVA CGLPNVGVHY ETWNTGVGGP VVLHGLNEGS RDLTWQTWSY QVGLKGEQMN LNSVEGSGSV EWMQGSLIAQ KQQPLAWYKA
701: YFETPSGDEP LALDMGSMGK GQVWINGQSI GRYWTAYADG DCKGCSYTGT FRAPKCQAGC GQPTQRWYHV PRSWLQPSRN LLVVLEELGG GDSSKIALAK
801: RSVSSVCADV SEDHPNIKKW QIESYGEREH RRAKVHLRCA HGQSISAIRF ASFGTPVGTC GNFQQGGCHS ASSHAVLEKR CIGLQRCVVA ISPDNFGGDP
901: CPSVTKRVAV EAVCSPAA

Best Arabidopsis Sequence Match ( AT1G45130.1 )
(BLAST)

001: MGTTILVLSK ILTFLLTTML IGSSVIQCSS VTYDKKAIVI NGHRRILLSG SIHYPRSTPE MWEDLIKKAK DGGLDVIDTY VFWNGHEPSP GTYNFEGRYD
101: LVRFIKTIQE VGLYVHLRIG PYVCAEWNFG GFPVWLKYVD GISFRTDNGP FKSAMQGFTE KIVQMMKEHR FFASQGGPII LSQIENEFEP DLKGLGPAGH
201: SYVNWAAKMA VGLNTGVPWV MCKEDDAPDP IINTCNGFYC DYFTPNKPYK PTMWTEAWSG WFTEFGGTVP KRPVEDLAFG VARFIQKGGS YINYYMYHGG
301: TNFGRTAGGP FITTSYDYDA PIDEYGLVQE PKYSHLKQLH QAIKQCEAAL VSSDPHVTKL GNYEEAHVFT AGKGSCVAFL TNYHMNAPAK VVFNNRHYTL
401: PAWSISILPD CRNVVFNTAT VAAKTSHVQM VPSGSILYSV ARYDEDIATY GNRGTITARG LLEQVNVTRD TTDYLWYTTS VDIKASESFL RGGKWPTLTV
501: DSAGHAVHVF VNGHFYGSAF GTRENRKFSF SSQVNLRGGA NKIALLSVAV GLPNVGPHFE TWATGIVGSV VLHGLDEGNK DLSWQKWTYQ AGLRGESMNL
601: VSPTEDSSVD WIKGSLAKQN KQPLTWYKAY FDAPRGNEPL ALDLKSMGKG QAWINGQSIG RYWMAFAKGD CGSCNYAGTY RQNKCQSGCG EPTQRWYHVP
701: RSWLKPKGNL LVLFEELGGD ISKVSVVKRS VN

Arabidopsis Description

BGAL5Beta-galactosidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAJ7]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.