Factsheet for GSMUA_Achr4P06620_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
cytosol 2
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	extracellular, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36360.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P21610_001	Banana	extracellular, golgi	89.75	67.76
GSMUA_Achr4P13580_001	Banana	golgi, vacuole	89.44	66.36
PGSC0003DMT400009496	Potato	nucleus, peroxisome, vacuole	55.43	65.99
EER92805	Sorghum	vacuole	78.11	59.74
CDY59691	Canola	cytosol, nucleus, vacuole	32.45	59.38
Os03t0165400-01	Rice	vacuole	77.17	59.1
TraesCS4A01G022500.2	Wheat	golgi, vacuole	76.86	58.65
TraesCS4D01G279400.4	Wheat	vacuole	77.02	58.49
TraesCS4B01G280900.1	Wheat	golgi, vacuole	76.71	58.46
HORVU4Hr1G074280.4	Barley	vacuole	76.24	57.97
Zm00001d048440_P003	Maize	vacuole	77.95	57.77
CDY59725	Canola	cytosol	27.64	57.05
KRH76716	Soybean	nucleus	73.45	55.71
VIT_04s0023g02690.t01	Wine grape	extracellular, golgi	72.98	55.62
KRH28740	Soybean	nucleus	73.29	55.33
Bra017756.1-P	Field mustard	cytosol, nucleus, vacuole	26.09	55.26
KRH08131	Soybean	nucleus	72.05	54.72
Zm00001d027803_P002	Maize	golgi, plasma membrane, vacuole	77.95	54.68
VIT_18s0001g13230.t01	Wine grape	extracellular, golgi	72.36	54.57
KRH69834	Soybean	extracellular, golgi	71.58	54.36
Solyc02g084720.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	71.27	54.32
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	71.27	54.32
VIT_03s0038g00150.t01	Wine grape	vacuole	72.36	54.0
Solyc01g110000.2.1	Tomato	nucleus	59.63	52.82
Bra011677.1-P	Field mustard	golgi, vacuole	69.88	52.57
PGSC0003DMT400079498	Potato	vacuole	59.32	52.54
KRH15132	Soybean	mitochondrion, nucleus	59.16	52.05
CDX75569	Canola	golgi, vacuole	66.77	52.0
KRH51779	Soybean	vacuole	57.45	51.89
CDX69219	Canola	vacuole	66.3	51.82
AT4G36360.1	Thale cress	endoplasmic reticulum, golgi, vacuole	68.79	51.75
KRH61101	Soybean	nucleus	58.7	51.36
KRH05876	Soybean	nucleus	58.23	51.23
CDY59693	Canola	vacuole	68.01	51.17
CDY53959	Canola	golgi, vacuole	57.92	51.1
Bra036334.1-P	Field mustard	golgi, vacuole	57.76	50.96
CDY47949	Canola	golgi, vacuole	57.76	50.96
Solyc04g080840.1.1	Tomato	extracellular, golgi	58.07	50.88
Bra014036.1-P	Field mustard	plastid	56.21	50.84
CDY36028	Canola	plastid	56.21	50.84
AT1G45130.1	Thale cress	golgi, vacuole	57.76	50.82
GSMUA_Achr6P35850_001	Banana	golgi, vacuole	62.11	48.54
GSMUA_Achr6P00880_001	Banana	golgi, vacuole	53.42	46.87
GSMUA_Achr7P08970_001	Banana	vacuole	53.11	46.85
GSMUA_Achr7P08940_001	Banana	vacuole	52.48	46.17
GSMUA_Achr7P08960_001	Banana	endoplasmic reticulum, golgi, vacuole	52.64	46.06
GSMUA_Achr7P08950_001	Banana	golgi, vacuole	52.48	45.92
GSMUA_Achr2P16780_001	Banana	plastid	52.8	40.43
GSMUA_Achr4P20830_001	Banana	golgi, vacuole	52.8	39.04
GSMUA_Achr4P22060_001	Banana	golgi, vacuole	50.31	38.57
GSMUA_Achr6P18730_001	Banana	golgi, vacuole	43.01	36.45
GSMUA_Achr4P26030_001	Banana	cytosol, peroxisome, vacuole	28.57	34.72
GSMUA_Achr2P21230_001	Banana	extracellular, golgi, vacuole	46.89	34.4
GSMUA_Achr11P...	Banana	golgi, vacuole	42.7	33.66
GSMUA_Achr2P21790_001	Banana	golgi, vacuole	43.94	33.65
GSMUA_Achr5P11870_001	Banana	extracellular, golgi	39.75	32.61
GSMUA_AchrUn_...	Banana	extracellular, vacuole	40.84	32.23
GSMUA_Achr1P14790_001	Banana	vacuole	40.68	31.76
GSMUA_Achr1P26480_001	Banana	vacuole	39.75	31.49
GSMUA_Achr4P05130_001	Banana	golgi, plastid, vacuole	40.22	30.87
GSMUA_Achr4P25980_001	Banana	extracellular, golgi, vacuole	29.19	30.37
GSMUA_Achr5P11850_001	Banana	extracellular, golgi	39.91	28.62

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
GO:GO:0030246	EnsemblPlantsGene:GSMUA_Achr4G06620_001	EnsemblPlants:GSMUA_Achr4P06620_001	EnsemblPlants:GSMUA_Achr4T06620_001	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat
InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979	InterPro:Lectin_gal-bd_dom	UniProt:M0SLM9
PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742	PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF79
SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI0002957BB3	:	:	:

Description

Beta-galactosidase 5 [Source:GMGC_GENE;Acc:GSMUA_Achr4G06620_001]

Coordinates

chr4:+:4969512..4974772

Molecular Weight (calculated)

71489.8 Da

IEP (calculated)

7.518

GRAVY (calculated)

-0.297

Length

644 amino acids

Sequence
(BLAST)

001: MAVGLKTGVP WVMCKEDDAP DPVINACNGF YCDSFTPNKP YKPTMWTEAW SGWFTEFGGT IHHRPVEDLA FAVARFIQKG GSFINYYMYH GGTNFGRTAG
101: GPFITTSYDY DAPIDEYGLV REPKYGHLKE LHRAIKLCER ALVSADPTVI SLGSLQQAHV FSSQSGGCAA FLSNHNPNSF ARVMFNNMHY NIPPWSISIL
201: PDCRNVVFNT AKVGVQTSQM QMYPINVQSL MWERYDEEVA SLEENSLITT TGLLEQINVT RDTSDYLWYI TSVDVSPAEG FLRGRKRPVL MVESAGHALH
301: IFVNGQLSGS AYGSREDRRI KFSGNVNLRA GTNRIALLSV AVGLPNAGVH YELWSTGVLG PVVLHGLDEG SRDLTWQKWS YQLGLKGEAM NLNSLEGASS
401: VEWMQGSLVA QNQQPLTWYR AYFDAPDGND PLALDMGSMG KGHVWINGQS IGRYWTAYAP SEYCNSCSYR GTYRSPKCQS GCGQPTQRWY HVPRSWLQPT
501: RNLLIVFEEL GGDATKISLA KRSVSSVCAD VSEWHPTIKN WHIENYGRPE EHHKPKVHLR CAQGQFISAI KFASYGTPIG TCGNFQQGAC HSPNSHTILE
601: KMCIGKEKCM VAISQNIFGG DPCRNVMKRV AVEAICSSAA QPTS

Best Arabidopsis Sequence Match ( AT1G45130.1 )
(BLAST)

001: MGTTILVLSK ILTFLLTTML IGSSVIQCSS VTYDKKAIVI NGHRRILLSG SIHYPRSTPE MWEDLIKKAK DGGLDVIDTY VFWNGHEPSP GTYNFEGRYD
101: LVRFIKTIQE VGLYVHLRIG PYVCAEWNFG GFPVWLKYVD GISFRTDNGP FKSAMQGFTE KIVQMMKEHR FFASQGGPII LSQIENEFEP DLKGLGPAGH
201: SYVNWAAKMA VGLNTGVPWV MCKEDDAPDP IINTCNGFYC DYFTPNKPYK PTMWTEAWSG WFTEFGGTVP KRPVEDLAFG VARFIQKGGS YINYYMYHGG
301: TNFGRTAGGP FITTSYDYDA PIDEYGLVQE PKYSHLKQLH QAIKQCEAAL VSSDPHVTKL GNYEEAHVFT AGKGSCVAFL TNYHMNAPAK VVFNNRHYTL
401: PAWSISILPD CRNVVFNTAT VAAKTSHVQM VPSGSILYSV ARYDEDIATY GNRGTITARG LLEQVNVTRD TTDYLWYTTS VDIKASESFL RGGKWPTLTV
501: DSAGHAVHVF VNGHFYGSAF GTRENRKFSF SSQVNLRGGA NKIALLSVAV GLPNVGPHFE TWATGIVGSV VLHGLDEGNK DLSWQKWTYQ AGLRGESMNL
601: VSPTEDSSVD WIKGSLAKQN KQPLTWYKAY FDAPRGNEPL ALDLKSMGKG QAWINGQSIG RYWMAFAKGD CGSCNYAGTY RQNKCQSGCG EPTQRWYHVP
701: RSWLKPKGNL LVLFEELGGD ISKVSVVKRS VN

Arabidopsis Description

BGAL5Beta-galactosidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAJ7]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.