Factsheet for GSMUA_Achr6P35850_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

nucleus 1
golgi 6
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13750.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0580200-01	Rice	golgi, vacuole	77.67	77.39
OQU87043	Sorghum	golgi, vacuole	77.06	76.78
GSMUA_Achr7P08970_001	Banana	vacuole	67.96	76.71
Zm00001d044290_P005	Maize	golgi, vacuole	76.82	76.27
HORVU3Hr1G050450.12	Barley	golgi, vacuole	76.7	76.05
TraesCS3D01G211500.2	Wheat	golgi, vacuole	76.46	75.45
TraesCS3A01G208600.1	Wheat	plastid	76.21	75.21
TraesCS3B01G235100.1	Wheat	golgi, vacuole	75.97	74.79
GSMUA_Achr7P08960_001	Banana	endoplasmic reticulum, golgi, vacuole	66.75	74.73
GSMUA_Achr6P00880_001	Banana	golgi, vacuole	66.5	74.66
GSMUA_Achr7P08950_001	Banana	golgi, vacuole	65.9	73.78
GSMUA_Achr7P08940_001	Banana	vacuole	64.93	73.09
CDX76255	Canola	extracellular	11.04	71.09
CDX88594	Canola	golgi, vacuole	28.03	71.08
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	71.72	70.27
KRH10007	Soybean	nucleus	71.36	70.0
PGSC0003DMT400083896	Potato	extracellular	70.51	69.58
Solyc12g044880.1.1	Tomato	golgi, vacuole	70.39	69.46
KRH23324	Soybean	vacuole	70.87	69.44
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	56.43	69.4
Solyc03g121540.2.1	Tomato	nucleus	70.51	69.33
KRH44153	Soybean	nucleus	70.87	69.28
PGSC0003DMT400006654	Potato	golgi, vacuole	70.39	69.21
Bra027403.1-P	Field mustard	golgi, vacuole	70.39	69.13
KRH47126	Soybean	nucleus	70.87	69.11
CDX97513	Canola	golgi, vacuole	70.39	69.05
Solyc06g062580.2.1	Tomato	nucleus	70.15	68.73
PGSC0003DMT400012359	Potato	golgi, vacuole	70.02	68.69
CDY23637	Canola	golgi, vacuole	69.9	68.65
Solyc12g008840.1.1	Tomato	extracellular	60.07	68.37
CDY51738	Canola	golgi, vacuole	69.42	68.18
CDY37486	Canola	golgi, vacuole	69.3	68.06
AT3G13750.1	Thale cress	golgi, vacuole	69.66	67.77
KRH37385	Soybean	nucleus	59.22	67.68
KRH12385	Soybean	vacuole	59.1	67.55
KRH19154	Soybean	golgi, mitochondrion, plastid, vacuole	68.33	67.1
KRH02714	Soybean	golgi, vacuole	68.08	66.87
VIT_11s0016g02200.t01	Wine grape	vacuole	67.72	66.75
Bra021506.1-P	Field mustard	vacuole	69.42	66.43
GSMUA_Achr2P16780_001	Banana	plastid	67.11	65.76
CDX94367	Canola	mitochondrion	56.31	65.17
GSMUA_Achr9P21610_001	Banana	extracellular, golgi	67.11	64.83
Bra019644.1-P	Field mustard	golgi, plastid, vacuole	55.7	64.47
CDX95380	Canola	vacuole	56.19	63.69
AT5G56870.1	Thale cress	vacuole	55.83	63.54
Bra013956.1-P	Field mustard	cytosol, mitochondrion, plastid, vacuole	56.19	63.25
CDY11899	Canola	golgi, vacuole	54.98	62.74
Bra006850.1-P	Field mustard	golgi, vacuole	54.98	62.74
AT4G26140.7	Thale cress	vacuole	57.28	62.68
GSMUA_Achr4P13580_001	Banana	golgi, vacuole	65.9	62.56
CDX92753	Canola	golgi, vacuole	53.88	62.36
CDY32919	Canola	golgi, vacuole	54.49	62.19
GSMUA_Achr4P06620_001	Banana	cytosol	48.54	62.11
CDX89360	Canola	mitochondrion	52.67	62.09
Bra035634.1-P	Field mustard	golgi, vacuole	54.37	62.05
CDY20708	Canola	golgi, vacuole	54.25	61.91
Bra019120.1-P	Field mustard	golgi, vacuole	53.4	61.8
CDY42755	Canola	vacuole	53.4	61.8
CDX76254	Canola	golgi, nucleus, vacuole	43.93	61.56
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	33.37	61.52
AT3G52840.2	Thale cress	golgi, vacuole	56.31	59.41
CDY70594	Canola	cytosol	28.76	56.97
CDY69471	Canola	cytosol	28.52	56.49
GSMUA_Achr4P22060_001	Banana	golgi, vacuole	54.13	53.1
GSMUA_Achr4P20830_001	Banana	golgi, vacuole	55.95	52.93
GSMUA_Achr6P18730_001	Banana	golgi, vacuole	46.12	50.0
GSMUA_Achr2P21230_001	Banana	extracellular, golgi, vacuole	51.09	47.95
GSMUA_Achr4P25980_001	Banana	extracellular, golgi, vacuole	35.92	47.82
GSMUA_Achr11P...	Banana	golgi, vacuole	46.84	47.25
GSMUA_Achr2P21790_001	Banana	golgi, vacuole	48.06	47.09
GSMUA_Achr4P26030_001	Banana	cytosol, peroxisome, vacuole	30.22	46.98
GSMUA_AchrUn_...	Banana	extracellular, vacuole	46.0	46.45
GSMUA_Achr5P11870_001	Banana	extracellular, golgi	43.69	45.86
GSMUA_Achr1P14790_001	Banana	vacuole	44.9	44.85
GSMUA_Achr1P26480_001	Banana	vacuole	44.05	44.65
GSMUA_Achr4P05130_001	Banana	golgi, plastid, vacuole	44.66	43.86
GSMUA_Achr5P11850_001	Banana	extracellular, golgi	43.45	39.87

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0004565	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	GO:GO:0030246	EnsemblPlantsGene:GSMUA_Achr6G35850_001	EnsemblPlants:GSMUA_Achr6P35850_001	EnsemblPlants:GSMUA_Achr6T35850_001	InterPro:Galactose-bd-like_sf
InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979
InterPro:Lectin_gal-bd_dom	UniProt:M0TD28	PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742	ScanProsite:PS01182
PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF74	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI000296405D	SEG:seg	:	:	:

Description

Beta-galactosidase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G35850_001]

Coordinates

chr6:+:33969125..33974407

Molecular Weight (calculated)

90988.5 Da

IEP (calculated)

5.490

GRAVY (calculated)

-0.222

Length

824 amino acids

Sequence
(BLAST)

001: MGSRPAPPAA GILPALLILA VAMAVVMSPL ASASVSYDHK AIAIDGRRRI LISGSIHYPR SVPEMWPDLI QKAKDGGLDV IQTYVFWNGH EPSPGEYYFE
101: GRYDLVRFIK LVQQAGLYVH LRIGPYVCAE WNFGGFPVWL KYVPGIVFRT DNEPFKAAMQ KFTEKIVSMM KSEGLFEWQG GPIILSQIEN EFGPLEYDQG
201: EPAKAYAAWA AKMAIGLDTG VPWVMCKEDD APDPVINTCN GFYCDYFSPN QPYKPNMWTE AWTAWFTGFG GPVPHRPVED LAFAVTKFIQ KGGSFVNYYM
301: YHGGTNFGRT AGGPFIATSY DYDAPIDEYG LLRQPKWGHL KDLHKAIKLC ESALVSGDPV VTSLGSSQES RVFRSNSGDC AAFLANYDTS SYARVAFNGM
401: HYDLPPWSIS ILPDCRTTVY NTARVGVQTS QIRMDSVGGF SWASYNEDTN AIDEEAFTTD GLLEQVNVTR DTTDYLWYMT YVNIDQDEQF LLTGQYPVLT
501: VMSAGHSLHV FINGQPTGTV YGSLDNPKLT YAGNVKLRAG SNTISILSVS VGLPNVGEHF ETWNAGVLGP VMLKGLNEGR RDLTWQKWSY QIGLRGETLN
601: LHSLSGSSSV EWQEASRNQP LTWYKAFFNA PDGNEPLALD MSSMGKGQVW INGQSIGRYW PGYMAYGSCG DCDYPAVHDS NPYHVPRSWL NPTGNLLVVF
701: EEWAGDPTGI SMVKRSVGSV CADISEWQPS MSNWHTRDYG KPKVRLFCGT AQNITAIKFA SFGTPQGACG SFSEGSCHAH KSYDAFEKNC LGEQRCSVTI
801: SPEVFGGDPC PGTMKRITVE AVCG

Best Arabidopsis Sequence Match ( AT3G13750.1 )
(BLAST)

001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA

Arabidopsis Description

BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.