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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, vacuole

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 4
  • plasma membrane 3
  • golgi 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, vacuole
Any Predictor:plastid, secretory
iPSORT:secretory
MultiLoc:vacuole
Predotar:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:golgi
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU3Hr1G018030.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G13750.1 HORVU3Hr1G018030.1 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3A01G208600.1 Wheat plastid 96.75 96.29
TraesCS3D01G211500.2 Wheat golgi, vacuole 96.51 96.05
TraesCS3B01G235100.1 Wheat golgi, vacuole 95.91 95.22
Os01t0580200-01 Rice golgi, vacuole 89.89 90.33
OQU87043 Sorghum golgi, vacuole 89.53 89.96
Zm00001d044290_P005 Maize golgi, vacuole 89.29 89.4
GSMUA_Achr6P35850_001 Banana golgi, vacuole 76.05 76.7
CDX88594 Canola golgi, vacuole 27.44 70.15
PGSC0003DMT400000899 Potato nucleus, peroxisome, vacuole 55.84 69.25
Solyc03g121540.2.1 Tomato nucleus 69.68 69.09
PGSC0003DMT400006654 Potato golgi, vacuole 69.43 68.85
VIT_09s0002g02120.t01 Wine grape golgi, vacuole 69.31 68.49
KRH23324 Soybean vacuole 69.31 68.49
KRH10007 Soybean nucleus 68.95 68.21
Solyc06g062580.2.1 Tomato nucleus 68.83 68.01
CDX76255 Canola extracellular 10.47 67.97
PGSC0003DMT400083896 Potato extracellular 68.23 67.9
KRH44153 Soybean nucleus 68.83 67.85
Solyc12g044880.1.1 Tomato golgi, vacuole 68.11 67.78
PGSC0003DMT400012359 Potato golgi, vacuole 68.47 67.74
KRH47126 Soybean nucleus 68.83 67.69
Solyc12g008840.1.1 Tomato extracellular 58.84 67.54
Bra027403.1-P Field mustard golgi, vacuole 67.51 66.87
CDX97513 Canola golgi, vacuole 67.51 66.79
CDY37486 Canola golgi, vacuole 67.39 66.75
CDY51738 Canola golgi, vacuole 67.27 66.63
AT3G13750.1 Thale cress golgi, vacuole 67.75 66.47
KRH37385 Soybean nucleus 57.64 66.44
CDY23637 Canola golgi, vacuole 67.03 66.39
Bra019644.1-P Field mustard golgi, plastid, vacuole 56.68 66.15
KRH12385 Soybean vacuole 57.28 66.02
CDX94367 Canola mitochondrion 56.32 65.73
VIT_11s0016g02200.t01 Wine grape vacuole 65.82 65.43
HORVU7Hr1G086690.2 Barley plasma membrane, vacuole 58.72 65.33
PGSC0003DMT400011458 Potato cytosol, nucleus, peroxisome 35.02 65.1
Bra021506.1-P Field mustard vacuole 67.27 64.92
CDX95380 Canola vacuole 56.56 64.65
KRH19154 Soybean golgi, mitochondrion, plastid, vacuole 65.22 64.6
KRH02714 Soybean golgi, vacuole 64.86 64.24
HORVU6Hr1G039490.6 Barley plastid 58.84 64.01
CDX76254 Canola golgi, nucleus, vacuole 45.25 63.95
Bra013956.1-P Field mustard cytosol, mitochondrion, plastid, vacuole 56.32 63.93
AT5G56870.1 Thale cress vacuole 55.48 63.67
CDY11899 Canola golgi, vacuole 55.23 63.57
Bra006850.1-P Field mustard golgi, vacuole 55.11 63.43
CDY42755 Canola vacuole 54.03 63.06
HORVU4Hr1G074280.4 Barley vacuole 64.02 62.81
Bra019120.1-P Field mustard golgi, vacuole 53.79 62.78
CDX92753 Canola golgi, vacuole 53.79 62.78
AT4G26140.7 Thale cress vacuole 56.8 62.68
CDX89360 Canola mitochondrion 52.47 62.37
Bra035634.1-P Field mustard golgi, vacuole 54.03 62.19
CDY20708 Canola golgi, vacuole 53.91 62.05
CDY32919 Canola golgi, vacuole 53.91 62.05
AT3G52840.2 Thale cress golgi, vacuole 56.56 60.18
CDY70594 Canola cytosol 29.36 58.65
CDY69471 Canola cytosol 29.24 58.41
HORVU0Hr1G008780.10 Barley plasma membrane, vacuole 52.95 50.63
HORVU3Hr1G081960.9 Barley vacuole 50.18 49.29
HORVU3Hr1G081970.1 Barley vacuole 48.26 48.96
HORVU2Hr1G057440.2 Barley vacuole 29.48 46.76
HORVU1Hr1G065290.7 Barley vacuole 45.13 45.62
HORVU5Hr1G045820.9 Barley extracellular, plasma membrane, vacuole 49.7 45.33
HORVU1Hr1G003210.2 Barley golgi, vacuole 43.68 43.89
HORVU1Hr1G003200.1 Barley golgi, vacuole 43.8 43.86
HORVU3Hr1G081980.9 Barley cytosol, vacuole 39.23 43.24
HORVU7Hr1G057460.1 Barley golgi 42.36 42.31
HORVU7Hr1G009630.2 Barley cytosol 30.2 36.43
Protein Annotations
KEGG:00052+3.2.1.23KEGG:00511+3.2.1.23KEGG:00531+3.2.1.23KEGG:00600+3.2.1.23KEGG:00604+3.2.1.23Gene3D:2.60.120.260
Gene3D:2.60.120.740MapMan:21.3.2.2.2Gene3D:3.20.20.80UniProt:A0A287L0J9GO:GO:0003674GO:GO:0003824
GO:GO:0004553GO:GO:0004565GO:GO:0005488GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0016787GO:GO:0016798GO:GO:0030246InterPro:Galactose-bd-like_sfInterPro:Gly_Hdrlase_35_catInterPro:Glyco_hydro_35_CS
InterPro:Glycoside_Hdrlase_35InterPro:Glycoside_hydrolase_SFEnsemblPlantsGene:HORVU3Hr1G050450EnsemblPlants:HORVU3Hr1G050450.12InterPro:IPR000922InterPro:IPR008979
InterPro:Lectin_gal-bd_domPFAM:PF01301PFAM:PF02140PRINTS:PR00742ScanProsite:PS01182PFscan:PS50228
PANTHER:PTHR23421PANTHER:PTHR23421:SF74SUPFAM:SSF49785SUPFAM:SSF51445SignalP:SignalP-noTMTMHMM:TMhelix
UniParc:UPI000B461AC8SEG:seg::::
Description
Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:A0A287L0J9]
Coordinates
chrchr3H:+:362406164..362425240
Molecular Weight (calculated)
92742.9 Da
IEP (calculated)
6.381
GRAVY (calculated)
-0.306
Length
831 amino acids
Sequence
(BLAST)
001: MASSELPAPS VLAVAFALAA LAATASAAVT YDRKALVVNG RRRILLSGSI HYPRSVPEMW PDLIQKAKDG GLDVVQTYVF WNGHEPSPGQ YYFEGRYDLV
101: HFIKLVKQAG LYVHLRIGPY VCAEWNFGGF PVWLKYVPGI SFRTDNQPFK LEMQKFTTKI VDMMKSEGLF EWQGGPIILS QIENEFGPLE WDQGEPSKAY
201: ASWAANMAIA LNTGVPWIMC KEDDAPDPII NTCNGFYCDW FSPNKPHKPT MWTEAWTAWY TGFGVPLPHR PVEDLAYGVA KFIQKGGSFV NYYMYHGGTN
301: FGRTAGGPFV ATSYDYDAPI DEYGLLREPK WGHLKELHRA IKLCEQALVA ADPIISSLGK AQKSSVFRSS TGACAAFLEN KDKLSYARVS FSGMHYDLPP
401: WSISILPDCK TTVFNTARVG SQISQMKMEW AGGLTWQSYN EEINSFGEEE AFTTVGLLEQ INMTRDNTDY LWYTTYVDVA KDEQFLTNGK YPKLTVMSAG
501: HALHVFVNGQ LTGTVYGNVE NPKLTYTRNV KLWAGSNTIS CLSIAVGLPN VGEHFETWNA GILGPVILYG LNEGRRDLTW QKWTYQVGLK GETMSLHSLS
601: GSSSVEWGEP VQKQPLTWYK AFFNAPDGDE PLALDMNSMG KGQIWINGQG IGRYWPGYKA SGTCGYCDYR GEYDETKCQT NCGDSSQRWY HVPRSWLNPT
701: GNLLVIFEEM GGDPSEISMV KRTTGSVCAD VSEWQPSMTN WRTKDYEKAK LHLQCDHGRK ITEIKFASFG TPQGSCGSYS EGGCHAHKSY DIFWKNCINQ
801: ERCGVSVVPE VFGGDPCPGT MKRAVVEVMC G
Best Arabidopsis Sequence Match ( AT3G13750.1 )
(BLAST)
001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA
Arabidopsis Description
BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.