Factsheet for TraesCS3A01G208600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13750.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT3G13750.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT3G13750.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G211500.2	Wheat	golgi, vacuole	98.68	98.68
TraesCS3B01G235100.1	Wheat	golgi, vacuole	98.08	97.85
HORVU3Hr1G050450.12	Barley	golgi, vacuole	96.29	96.75
Os01t0580200-01	Rice	golgi, vacuole	88.98	89.84
OQU87043	Sorghum	golgi, vacuole	88.62	89.48
Zm00001d044290_P005	Maize	golgi, vacuole	88.74	89.28
GSMUA_Achr6P35850_001	Banana	golgi, vacuole	75.21	76.21
CDX88594	Canola	golgi, vacuole	27.43	70.46
Solyc03g121540.2.1	Tomato	nucleus	69.7	69.45
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	55.69	69.4
PGSC0003DMT400006654	Potato	golgi, vacuole	69.46	69.21
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	69.7	69.2
CDX76255	Canola	extracellular	10.54	68.75
KRH23324	Soybean	vacuole	68.98	68.49
TraesCS7A01G363600.1	Wheat	plasma membrane, vacuole	58.8	68.38
Solyc06g062580.2.1	Tomato	nucleus	68.86	68.37
KRH10007	Soybean	nucleus	68.74	68.33
KRH44153	Soybean	nucleus	68.98	68.33
PGSC0003DMT400083896	Potato	extracellular	68.26	68.26
KRH47126	Soybean	nucleus	68.98	68.17
PGSC0003DMT400012359	Potato	golgi, vacuole	68.5	68.1
Solyc12g044880.1.1	Tomato	golgi, vacuole	67.9	67.9
CDX97513	Canola	golgi, vacuole	68.26	67.86
Bra027403.1-P	Field mustard	golgi, vacuole	68.14	67.82
CDY37486	Canola	golgi, vacuole	67.9	67.58
Solyc12g008840.1.1	Tomato	extracellular	58.56	67.54
CDY51738	Canola	golgi, vacuole	67.78	67.46
TraesCS6A01G185400.1	Wheat	golgi, vacuole	58.44	67.4
CDY23637	Canola	golgi, vacuole	67.66	67.34
AT3G13750.1	Thale cress	golgi, vacuole	68.14	67.18
KRH37385	Soybean	nucleus	57.48	66.57
Bra019644.1-P	Field mustard	golgi, plastid, vacuole	56.77	66.57
KRH12385	Soybean	vacuole	57.13	66.16
CDX94367	Canola	mitochondrion	56.17	65.87
Bra021506.1-P	Field mustard	vacuole	67.78	65.74
CDX95380	Canola	vacuole	56.65	65.06
KRH19154	Soybean	golgi, mitochondrion, plastid, vacuole	65.27	64.96
VIT_11s0016g02200.t01	Wine grape	vacuole	65.03	64.95
KRH02714	Soybean	golgi, vacuole	64.91	64.6
CDX76254	Canola	golgi, nucleus, vacuole	45.27	64.29
Bra013956.1-P	Field mustard	cytosol, mitochondrion, plastid, vacuole	56.17	64.07
AT5G56870.1	Thale cress	vacuole	55.33	63.81
CDY11899	Canola	golgi, vacuole	54.97	63.57
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	34.01	63.53
Bra006850.1-P	Field mustard	golgi, vacuole	54.85	63.43
CDY42755	Canola	vacuole	53.77	63.06
TraesCS4A01G022500.2	Wheat	golgi, vacuole	63.71	63.03
Bra019120.1-P	Field mustard	golgi, vacuole	53.65	62.92
CDX92753	Canola	golgi, vacuole	53.53	62.78
AT4G26140.7	Thale cress	vacuole	56.53	62.68
CDX89360	Canola	mitochondrion	52.34	62.52
Bra035634.1-P	Field mustard	golgi, vacuole	54.01	62.47
CDY32919	Canola	golgi, vacuole	53.89	62.33
CDY20708	Canola	golgi, vacuole	53.89	62.33
AT3G52840.2	Thale cress	golgi, vacuole	56.05	59.92
CDY70594	Canola	cytosol	28.98	58.17
CDY69471	Canola	cytosol	28.98	58.17
TraesCS4A01G083700.3	Wheat	extracellular	52.34	51.23
TraesCS3A01G386300.1	Wheat	golgi, vacuole	49.94	49.58
TraesCS3A01G386200.1	Wheat	vacuole	48.86	48.34
TraesCS1A01G267700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	45.75	46.36
TraesCS5A01G143600.4	Wheat	plasma membrane	49.58	45.44
TraesCS1A01G024100.1	Wheat	vacuole	44.07	44.44
TraesCS3A01G386100.3	Wheat	vacuole	43.23	43.44
TraesCS7A01G272400.2	Wheat	vacuole	42.63	41.74
TraesCS5A01G330900.1	Wheat	endoplasmic reticulum, vacuole	39.52	39.33

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0030246
InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922
InterPro:IPR008979	InterPro:Lectin_gal-bd_dom	PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742	ScanProsite:PS01182
PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF74	SUPFAM:SSF49785	SUPFAM:SSF51445	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS3A01G208600	EnsemblPlants:TraesCS3A01G208600.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3A:+:369397648..369404885

Molecular Weight (calculated)

92674.9 Da

IEP (calculated)

6.546

GRAVY (calculated)

-0.266

Length

835 amino acids

Sequence
(BLAST)

001: MASSALPAPS VVAVAVAVAF AVATLAATAS AAVTYDRKAL VVNGRRRILL SGSIHYPRSV PEMWPDLIQK AKGGGLDVVQ TYVFWNGHEP SPGQYYFEGR
101: YDLVRFIKLV KQAGLYVHLR IGPYVCAEWN FGGFPVWLKY VPGISFRTDN QPFKLEMQKF TTKIVDMMKS EGLFEWQGGP IILSQIENEF GPLEWDQGEP
201: SKAYASWAAN MAIALNTGVP WIMCKEDDAP DPIINTCNGF YCDWFSPNKP HKPTMWTEAW TAWYTGFGVP VPHRPVEDLA YGVAKFIQKG GSFVNYYMYH
301: GGTNFGRTAG GPFVATSYDY DAPIDEYGLL REPKWGHLKE LHRAIKLCEP ALVAGDPIIS SLGKAQKSSV FRSSTGACAA FLENKDKLSY ARVSFSGMHY
401: DLPPWSISIL PDCKTTVFNT ARVGSQISQM KMEWAGGLTW QSYNEEINSY SEEEAFTAVG LLEQINMTRD NTDYLWYTTY VDVAKNEQFL TSGKSPKLTV
501: MSAGHALHVF VNGQLTGTVY GSVEDPKLTY TGSVKLWAGS NTISCLSIAV GLPNVGEHFE TWNAGILGPV ILYGLNEGRR DLTWQKWTYQ VGLKGEAMSL
601: HSLSGSSSVE WGEPVQKQPL TWYKAFFNAP DGDEPLALDM NSMGKGQIWI NGQGIGRYWP GYKAPGTCGY CDYRGEYDET KCQTNCGDSS QRWYHVPRAW
701: LNPTGNLLVI FEEMGGDPSE ISMVKRTRGS VCADVSEWQP SMTNWRTKDY EKAKVHLQCD HGRKITEVKF ASFGTPQGSC GSYSEGGCHA HKSYDIFWKN
801: CINQEHCAVS VVPEVFGGDP CPGTMKRAVV EVMCG

Best Arabidopsis Sequence Match ( AT3G13750.1 )
(BLAST)

001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA

Arabidopsis Description

BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.