Factsheet for TraesCS4A01G083700.3

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 6
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

extracellular: 19786127
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G220500.1	Wheat	golgi	96.48	96.48
TraesCS4D01G220800.2	Wheat	vacuole	97.66	96.08
HORVU0Hr1G008780.10	Barley	plasma membrane, vacuole	96.6	94.82
EER92534	Sorghum	endoplasmic reticulum, golgi	84.88	84.19
Zm00001d028474_P002	Maize	vacuole	84.88	80.62
Os03t0255100-01	Rice	extracellular	84.64	75.52
KRH29942	Soybean	extracellular, golgi, vacuole	67.53	68.74
KRH22910	Soybean	nucleus	67.64	68.69
GSMUA_Achr4P20830_001	Banana	golgi, vacuole	69.75	68.31
VIT_06s0004g03020.t01	Wine grape	extracellular	67.29	67.85
KRH26431	Soybean	golgi, vacuole	66.35	67.38
KRG89008	Soybean	nucleus	65.65	66.99
CDY15749	Canola	golgi, vacuole	65.53	66.23
AT2G28470.1	Thale cress	endoplasmic reticulum, golgi, vacuole	66.12	66.2
Bra000493.1-P	Field mustard	golgi, vacuole	65.42	66.11
Bra011946.1-P	Field mustard	golgi, vacuole	65.42	66.04
CDY04567	Canola	golgi, vacuole	65.53	65.76
CDY31204	Canola	golgi, vacuole	65.06	65.76
CDX83288	Canola	golgi, vacuole	64.83	65.44
PGSC0003DMT400020941	Potato	extracellular	65.18	65.26
GSMUA_Achr4P22060_001	Banana	golgi, vacuole	64.24	65.24
Solyc11g069270.1.1	Tomato	extracellular	64.83	64.91
TraesCS6A01G185400.1	Wheat	golgi, vacuole	46.66	54.97
TraesCS7A01G363600.1	Wheat	plasma membrane, vacuole	45.84	54.46
TraesCS4A01G022500.2	Wheat	golgi, vacuole	53.22	53.79
TraesCS3A01G208600.1	Wheat	plastid	51.23	52.34
TraesCS3A01G386300.1	Wheat	golgi, vacuole	51.0	51.72
TraesCS3A01G386200.1	Wheat	vacuole	50.29	50.83
TraesCS5A01G143600.4	Wheat	plasma membrane	51.82	48.52
TraesCS1A01G024100.1	Wheat	vacuole	45.49	46.86
TraesCS1A01G267700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	44.08	45.63
TraesCS3A01G386100.3	Wheat	vacuole	41.97	43.08
TraesCS7A01G272400.2	Wheat	vacuole	39.86	39.86
TraesCS5A01G330900.1	Wheat	endoplasmic reticulum, vacuole	37.75	38.38

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0030246	GO:GO:0030312	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat
InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979	InterPro:Lectin_gal-bd_dom
PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228	PANTHER:PTHR23421
PANTHER:PTHR23421:SF72	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS4A01G083700
EnsemblPlants:TraesCS4A01G083700.3	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:88012464..88017660

Molecular Weight (calculated)

91740.1 Da

IEP (calculated)

6.238

GRAVY (calculated)

-0.164

Length

853 amino acids

Sequence
(BLAST)

001: MAAVGRLPGA AAALLLALLC LAGTSAATNV TYDHRALVID GVRRVLVSGS IHYPRSTPDM WPGLMQKAKD GGLDMVETYV FWDAHEPVRG QYDFEGRNDL
101: VRFVKAAADA GLYVHLRIGP YVCAEWNYGG FPLWLHFIPG IKFRTDNEPF KTEMQRFTEK VVATMKGAGL YASQGGPIIL SQIENEYGNI DASYGAPGKS
201: YIRWAAGMAV ALDTGVPWVM CQQADAPAPL INTCNGFYCD QFTPSLPSSP KLWTENWSGW FLSFGGAVPY RPTEDLAFAV ARFYQRGGTL QNYYMYHGGT
301: NFGRSSGGPF ISTSYDYDAP IDEYGLVRQP KWGHLRDVHK AIKMCEPALI ATDPSYMSLG QNAEAHVYKT GSLCAAFLAN IDNQSDKTVT FNGKAYKLPA
401: WSVSILPDCT NVVLNTAQIN SQVASTQMRN LGFSTQASDG SSVEAELASS TWSYAVEPVG ITKENAMTKP GLMEQINTTA DASDFLWYST SIVVAGGEPY
501: LNGSQSNLLV NSLGHVLQVF INGKFAGSGK GNASSSLISL TTPVTLVPGK NKIDLLSATV GLTNYGAFFD LVGAGITGPV KLTGPKGALD LSSADWTYQI
601: GLRGEDLHLY NPSEASPEWV SDNSYPTNNP LTWYKSKFTT PAGDDPVAID FTGMGKGEAW VNGQSIGRYW PTNIAPQSGC VNSCNYRGPY GASKCLKKCG
701: QPSQTLYHVP RSFLQPGSND IVLFEQFGGD PSKISFTTKQ TESVCAHVSE DHPDQIDSWI SPQQKLQRSG PALRLECPKE GQVISSIKFA SFGTPSGTCG
801: SYSHGECSSS QALAVAQEAC VGVSSCSVPV SAKNFGDPCR GVTKSLVVEA ACS

Best Arabidopsis Sequence Match ( AT2G28470.4 )
(BLAST)

001: MVKVRKMEMI LLLILVIVVA ATAANVTYDH RALVIDGKRK VLISGSIHYP RSTPEMWPEL IQKSKDGGLD VIETYVFWSG HEPEKNKYNF EGRYDLVKFV
101: KLAAKAGLYV HLRIGPYVCA EWNYGGFPVW LHFVPGIKFR TDNEPFKEEM QRFTTKIVDL MKQEKLYASQ GGPIILSQIE NEYGNIDSAY GAAAKSYIKW
201: SASMALSLDT GVPWNMCQQT DAPDPMINTC NGFYCDQFTP NSNNKPKMWT ENWSGWFLGF GDPSPYRPVE DLAFAVARFY QRGGTFQNYY MYHGGTNFDR
301: TSGGPLISTS YDYDAPIDEY GLLRQPKWGH LRDLHKAIKL CEDALIATDP TITSLGSNLE AAVYKTESGS CAAFLANVDT KSDATVTFNG KSYNLPAWSV
401: SILPDCKNVA FNTAKINSAT ESTAFARQSL KPDGGSSAEL GSQWSYIKEP IGISKADAFL KPGLLEQINT TADKSDYLWY SLRTDIKGDE TFLDEGSKAV
501: LHIESLGQVV YAFINGKLAG SGHGKQKISL DIPINLVTGT NTIDLLSVTV GLANYGAFFD LVGAGITGPV TLKSAKGGSS IDLASQQWTY QVGLKGEDTG
601: LATVDSSEWV SKSPLPTKQP LIWYKTTFDA PSGSEPVAID FTGTGKGIAW VNGQSIGRYW PTSIAGNGGC TESCDYRGSY RANKCLKNCG KPSQTLYHVP
701: RSWLKPSGNI LVLFEEMGGD PTQISFATKQ TGSNLCLTVS QSHPPPVDTW TSDSKISNRN RTRPVLSLKC PISTQVIFSI KFASFGTPKG TCGSFTQGHC
801: NSSRSLSLVQ KACIGLRSCN VEVSTRVFGE PCRGVVKSLA VEASCS

Arabidopsis Description

BGAL8Beta-galactosidase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV4]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.