Factsheet for VIT_06s0004g03020.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	golgi

extracellular: 23391302
extracellular: 26106900

msms PMID: 23391302 doi

B Delaunois, T Colby, N Belloy, A Conreux, A Harzen, F Baillieul, C Clément, J Schmidt, P Jeandet, S Cordelier

Université de Reims Champagne-Ardenne, UFR Sciences Exactes et Naturelles, Unité de Recherche Vigne et Vins de Champagne - EA 4707, Laboratoire de Stress, Défenses et Reproduction des Plantes, B,P, 1039, Reims, cedex 02, 51687, France.

msms PMID: 26106900 doi

C Guillier, M Gamm, G Lucchi, C Truntzer, D Pecqueur, P Ducoroy, M Adrian, MC Héloir

Clinical Innovation Proteomic Platform - CLIPP, 15 Boulevard Maréchal de Lattre de Tassigny, BP37013, F-21070 Dijon cedex, France., CNRS, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21000 Dijon, France;, Université de Bourgogne, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21000 Dijon, France;

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22910	Soybean	nucleus	78.96	79.52
KRH29942	Soybean	extracellular, golgi, vacuole	78.13	78.88
KRH26431	Soybean	golgi, vacuole	77.19	77.74
KRG89008	Soybean	nucleus	74.94	75.84
PGSC0003DMT400020941	Potato	extracellular	75.3	74.77
Solyc11g069270.1.1	Tomato	extracellular	74.7	74.18
AT2G28470.1	Thale cress	endoplasmic reticulum, golgi, vacuole	73.29	72.77
CDY15749	Canola	golgi, vacuole	72.58	72.75
GSMUA_Achr4P20830_001	Banana	golgi, vacuole	74.47	72.33
CDY31204	Canola	golgi, vacuole	71.99	72.16
CDX83288	Canola	golgi, vacuole	71.99	72.07
Bra000493.1-P	Field mustard	golgi, vacuole	71.87	72.04
Bra011946.1-P	Field mustard	golgi, vacuole	71.87	71.95
CDY04567	Canola	golgi, vacuole	71.87	71.53
EER92534	Sorghum	endoplasmic reticulum, golgi	68.91	67.79
GSMUA_Achr4P22060_001	Banana	golgi, vacuole	67.14	67.62
TraesCS4A01G083700.3	Wheat	extracellular	67.85	67.29
TraesCS4B01G220500.1	Wheat	golgi	67.61	67.06
TraesCS4D01G220800.2	Wheat	vacuole	67.61	65.97
HORVU0Hr1G008780.10	Barley	plasma membrane, vacuole	67.73	65.94
Zm00001d028474_P002	Maize	vacuole	69.27	65.26
Os03t0255100-01	Rice	extracellular	68.32	60.46
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	57.33	57.67
VIT_11s0016g02200.t01	Wine grape	vacuole	56.26	56.94
VIT_04s0023g02690.t01	Wine grape	extracellular, golgi	54.49	54.56
VIT_07s0031g02480.t01	Wine grape	extracellular	53.66	53.6
VIT_18s0001g13230.t01	Wine grape	extracellular, golgi	54.02	53.51
VIT_07s0031g02590.t01	Wine grape	extracellular, golgi, vacuole	28.84	52.93
VIT_03s0038g00150.t01	Wine grape	vacuole	53.43	52.38
VIT_11s0016g00680.t01	Wine grape	vacuole	51.54	52.22
VIT_08s0007g04270.t01	Wine grape	extracellular, golgi, vacuole	50.35	51.14
VIT_18s0001g02220.t01	Wine grape	vacuole	46.45	48.34
VIT_18s0001g02230.t01	Wine grape	golgi, vacuole	46.34	47.75
VIT_03s0038g02360.t01	Wine grape	extracellular, golgi	43.97	44.66

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	EntrezGene:100245036
wikigene:100245036	Gene3D:2.60.120.260	Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	ProteinID:CBI16297
ProteinID:CBI16297.3	UniProt:D7SKW9	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0004565	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	GO:GO:0030246	GO:GO:0030312	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS
InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979	EntrezGene:LOC100245036	wikigene:LOC100245036
InterPro:Lectin_gal-bd_dom	PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228
PANTHER:PTHR23421	PANTHER:PTHR23421:SF74	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	TIGR:TC64339
TMHMM:TMhelix	UniParc:UPI00015C7EE7	ArrayExpress:VIT_06s0004g03020	EnsemblPlantsGene:VIT_06s0004g03020	EnsemblPlants:VIT_06s0004g03020.t01	unigene:Vvi.13778
RefSeq:XP_002285084	RefSeq:XP_002285084.2	SEG:seg	:	:	:

Description

Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:D7SKW9]

Coordinates

chr6:-:3765540..3775290

Molecular Weight (calculated)

92183.2 Da

IEP (calculated)

6.701

GRAVY (calculated)

-0.167

Length

846 amino acids

Sequence
(BLAST)

001: MRGVGFVFVL VSLLGAIATT SFASTVTYDH RALVIDGKRR VLISGSIHYP RSTPDMWPDL IQKSKDGGLD VIETYVFWNL HEPVRRQYDF KGRNDLVKFV
101: KTVAEAGLYV HLRIGPYVCA EWNYGGFPLW LHFIPGIQFR TDNGPFKEEM QIFTAKIVDM MKKENLYASQ GGPIILSQIE NEYGNIDSAY GSAAKSYIQW
201: AASMATSLDT GVPWVMCQQA DAPDPMINTC NGFYCDQFTP NSVKKPKMWT ENWTGWFLSF GGAVPYRPVE DIAFAVARFF QLGGTFQNYY MYHGGTNFGR
301: TTGGPFIATS YDYDAPIDEY GLLRQPKWGH LKDLHKAIKL CEAALIATDP TITSLGTNLE ASVYKTGTGS CAAFLANVRT NSDATVNFSG NSYHLPAWSV
401: SILPDCKNVA LNTAQINSMA VMPRFMQQSL KNDIDSSDGF QSGWSWVDEP VGISKNNAFT KLGLLEQINI TADKSDYLWY SLSTEIQGDE PFLEDGSQTV
501: LHVESLGHAL HAFINGKLAG SGTGNSGNAK VTVDIPVTLI HGKNTIDLLS LTVGLQNYGA FYDKQGAGIT GPIKLKGLAN GTTVDLSSQQ WTYQVGLQGE
601: ELGLPSGSSS KWVAGSTLPK KQPLIWYKTT FDAPAGNDPV ALDFMGMGKG EAWVNGQSIG RYWPAYVSSN GGCTSSCNYR GPYSSNKCLK NCGKPSQQLY
701: HVPRSWLQPS GNTLVLFEEI GGDPTQISFA TKQVESLCSR VSEYHPLPVD MWGSDLTTGR KSSPMLSLEC PFPNQVISSI KFASFGTPRG TCGSFSHSKC
801: SSRTALSIVQ EACIGSKSCS IGVSIDTFGD PCSGIAKSLA VEASCT

Best Arabidopsis Sequence Match ( AT2G28470.3 )
(BLAST)

001: MEIAAKMVKV RKMEMILLLI LVIVVAATAA NVTYDHRALV IDGKRKVLIS GSIHYPRSTP EMWPELIQKS KDGGLDVIET YVFWSGHEPE KNKYNFEGRY
101: DLVKFVKLAA KAGLYVHLRI GPYVCAEWNY GGFPVWLHFV PGIKFRTDNE PFKEEMQRFT TKIVDLMKQE KLYASQGGPI ILSQIENEYG NIDSAYGAAA
201: KSYIKWSASM ALSLDTGVPW NMCQQTDAPD PMINTCNGFY CDQFTPNSNN KPKMWTENWS GWFLGFGDPS PYRPVEDLAF AVARFYQRGG TFQNYYMYHG
301: GTNFDRTSGG PLISTSYDYD APIDEYGLLR QPKWGHLRDL HKAIKLCEDA LIATDPTITS LGSNLEAAVY KTESGSCAAF LANVDTKSDA TVTFNGKSYN
401: LPAWSVSILP DCKNVAFNTA KINSATESTA FARQSLKPDG GSSAELGSQW SYIKEPIGIS KADAFLKPGL LEQINTTADK SDYLWYSLRT DIKGDETFLD
501: EGSKAVLHIE SLGQVVYAFI NGKLAGSGHG KQKISLDIPI NLVTGTNTID LLSVTVGLAN YGAFFDLVGA GITGPVTLKS AKGGSSIDLA SQQWTYQVGL
601: KGEDTGLATV DSSEWVSKSP LPTKQPLIWY KTTFDAPSGS EPVAIDFTGT GKGIAWVNGQ SIGRYWPTSI AGNGGCTESC DYRGSYRANK CLKNCGKPSQ
701: TLYHVPRSWL KPSGNILVLF EEMGGDPTQI SFATKQTGSN LCLTVSQSHP PPVDTWTSDS KISNRNRTRP VLSLKCPIST QVIFSIKFAS FGTPKGTCGS
801: FTQGHCNSSR SLSLVQKACI GLRSCNVEVS TRVFGEPCRG VVKSLAVEAS CS

Arabidopsis Description

BGAL8Beta-galactosidase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV4]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.