Factsheet for VIT_03s0038g02360.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 7
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031178	Potato	vacuole	64.11	64.42
Solyc10g055470.1.1	Tomato	vacuole	63.99	64.29
Solyc01g111540.2.1	Tomato	unclear	63.51	63.66
PGSC0003DMT400015841	Potato	endoplasmic reticulum, golgi, vacuole	61.46	63.29
KRH29286	Soybean	extracellular, golgi, vacuole	62.91	62.23
KRH24309	Soybean	golgi, vacuole	62.67	61.92
GSMUA_AchrUn_...	Banana	extracellular, vacuole	60.02	61.27
KRH60700	Soybean	extracellular, golgi, vacuole	61.58	60.78
GSMUA_Achr1P26480_001	Banana	vacuole	58.34	59.78
GSMUA_Achr1P14790_001	Banana	vacuole	58.58	59.15
GSMUA_Achr4P05130_001	Banana	golgi, plastid, vacuole	58.58	58.16
AT2G16730.1	Thale cress	extracellular, golgi, vacuole	57.62	56.6
CDX75479	Canola	vacuole	57.14	56.33
Bra011577.1-P	Field mustard	vacuole	57.02	56.21
CDX69103	Canola	vacuole	56.78	56.04
CDY40650	Canola	vacuole	56.66	55.92
AT4G35010.1	Thale cress	vacuole	56.66	55.86
Bra017687.1-P	Field mustard	vacuole	56.54	55.81
CDX72512	Canola	vacuole	56.42	55.69
Os09t0539200-01	Rice	vacuole	29.65	55.38
Bra013052.1-P	Field mustard	golgi, vacuole	56.18	55.32
Bra001991.1-P	Field mustard	golgi, vacuole	53.9	55.3
CDY31414	Canola	cytosol, golgi, mitochondrion, peroxisome	51.74	55.26
HORVU7Hr1G057460.1	Barley	golgi	54.02	54.09
TraesCS7D01G272600.1	Wheat	golgi, vacuole	54.5	54.05
KXG25431	Sorghum	golgi	54.26	53.3
Os08t0549200-01	Rice	plasma membrane	53.9	52.95
CDY70118	Canola	cytosol	37.7	52.86
Zm00001d053225_P005	Maize	golgi, vacuole	53.54	52.72
VIT_07s0031g02590.t01	Wine grape	extracellular, golgi, vacuole	29.17	52.71
CDX72747	Canola	vacuole	56.06	52.71
Zm00001d032022_P003	Maize	golgi, vacuole	53.54	52.47
TraesCS7A01G272400.2	Wheat	vacuole	53.54	52.29
TraesCS7B01G169700.1	Wheat	vacuole	53.78	51.44
TraesCS5A01G330900.1	Wheat	endoplasmic reticulum, vacuole	51.02	50.66
KXG36088	Sorghum	endoplasmic reticulum, golgi, vacuole	50.66	50.42
TraesCS5B01G331300.1	Wheat	golgi, vacuole	50.78	50.42
CDY22419	Canola	cytosol	56.66	49.37
Bra033571.1-P	Field mustard	cytosol	56.66	49.37
VIT_18s0001g02230.t01	Wine grape	golgi, vacuole	48.38	49.09
VIT_18s0001g02220.t01	Wine grape	vacuole	47.42	48.59
TraesCS5D01G336700.2	Wheat	vacuole	48.5	48.15
CDY02241	Canola	golgi, vacuole	56.18	47.32
HORVU7Hr1G009630.2	Barley	cytosol	38.78	46.88
Zm00001d006243_P005	Maize	endoplasmic reticulum, golgi, vacuole	48.62	46.5
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	45.74	45.3
VIT_11s0016g02200.t01	Wine grape	vacuole	44.78	44.62
VIT_04s0023g02690.t01	Wine grape	extracellular, golgi	44.9	44.26
VIT_07s0031g02480.t01	Wine grape	extracellular	44.78	44.04
VIT_06s0004g03020.t01	Wine grape	extracellular	44.66	43.97
Zm00001d022621_P005	Maize	vacuole	46.94	43.74
VIT_03s0038g00150.t01	Wine grape	vacuole	45.02	43.45
AT4G38590.2	Thale cress	golgi, vacuole	54.74	43.35
CDX89744	Canola	vacuole	55.82	42.82
VIT_18s0001g13230.t01	Wine grape	extracellular, golgi	43.22	42.15
VIT_08s0007g04270.t01	Wine grape	extracellular, golgi, vacuole	41.3	41.3
VIT_11s0016g00680.t01	Wine grape	vacuole	40.82	40.72

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	EntrezGene:100258852
wikigene:100258852	Gene3D:2.60.120.260	Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	InterPro:BetaGal_jelly_roll_dom
ProteinID:CBI37877	ProteinID:CBI37877.3	ncoils:Coil	UniProt:D7U558	EMBL:FN596508	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0004565	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	GO:GO:0030312	InterPro:Galactose-bd-like_sf
InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979
EntrezGene:LOC100258852	wikigene:LOC100258852	InterPro:Lectin_gal-bd_dom	PFAM:PF01301	PFAM:PF02140	PFAM:PF13364
PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF52	SUPFAM:SSF49785
SUPFAM:SSF51445	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00015C8391	ArrayExpress:VIT_03s0038g02360	EnsemblPlantsGene:VIT_03s0038g02360
EnsemblPlants:VIT_03s0038g02360.t01	unigene:Vvi.22093	RefSeq:XP_002278545	RefSeq:XP_002278545.1	SEG:seg	:

Description

Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:D7U558]

Coordinates

chr3:-:1640991..1645417

Molecular Weight (calculated)

93527.4 Da

IEP (calculated)

8.810

GRAVY (calculated)

-0.315

Length

833 amino acids

Sequence
(BLAST)

001: MVVSGQALIA AVLSLLVSYA AAHGIAKGAK TVTYDGRSLI VNGRRELLFS GSIHYPRSTP EMWPDILQKA KHGGLNLIQT YVFWNIHEPV EGQFNFEGNY
101: DLVKFIKLIG DYGLYATLRI GPFIEAEWNH GGFPYWLREV PDIIFRSYNE PFKYHMEKYS RMIIEMMKEA KLFAPQGGPI ILAQIENEYN SIQLAYRELG
201: VQYVQWAGKM AVGLGAGVPW IMCKQKDAPD PVINTCNGRH CGDTFTGPNR PNKPSLWTEN WTAQYRVFGD PPSQRAAEDL AFSVARFISK NGTLANYYMY
301: HGGTNFGRTG SSFVTTRYYD EAPLDEYGLQ REPKWGHLKD LHSALRLCKK ALFTGSPGVE KLGKDKEVRF YEKPGTHICA AFLTNNHSRE AATLTFRGEE
401: YFLPPHSISI LPDCKTVVYN TQRVVAQHNA RNFVKSKIAN KNLKWEMSQE PIPVMTDMKI LTKSPMELYN FLKDRSDYAW FVTSIELSNY DLPMKKDIIP
501: VLQISNLGHA MLAFVNGNFI GSAHGSNVEK NFVFRKPVKF KAGTNYIALL CMTVGLPNSG AYMEHRYAGI HSVQILGLNT GTLDITNNGW GQQVGVNGEH
601: VKAYTQGGSH RVQWTAAKGK GPAMTWYKTY FDMPEGNDPV ILRMTSMAKG MAWVNGKNIG RYWLSYLSPL EKPSQSEYHV PRAWLKPSDN LLVIFEETGG
701: NPEEIEVELV NRDTICSIVT EYHPPHVKSW QRHDSKIRAV VDEVKPKGHL KCPNYKVIVK VDFASFGNPL GACGDFEMGN CTAPNSKKVV EQHCMGKTTC
801: EIPMEAGIFD GNSGACSDIT KTLAVQVRCG RKV

Best Arabidopsis Sequence Match ( AT2G16730.1 )
(BLAST)

001: MKIHSSDHSW LLLAVLVILL SFSGALSSDD KEKKTKSVDK KKEVTYDGTS LIINGNRELL YSGSIHYPRS TPEMWPNIIK RAKQGGLNTI QTYVFWNVHE
101: PEQGKFNFSG RADLVKFIKL IEKNGLYVTL RLGPFIQAEW THGGLPYWLR EVPGIFFRTD NEPFKEHTER YVKVVLDMMK EEKLFASQGG PIILGQIENE
201: YSAVQRAYKE DGLNYIKWAS KLVHSMDLGI PWVMCKQNDA PDPMINACNG RHCGDTFPGP NKDNKPSLWT ENWTTQFRVF GDPPAQRSVE DIAYSVARFF
301: SKNGTHVNYY MYHGGTNFGR TSAHYVTTRY YDDAPLDEFG LEREPKYGHL KHLHNALNLC KKALLWGQPR VEKPSNETEI RYYEQPGTKV CAAFLANNNT
401: EAAEKIKFRG KEYLIPHRSI SILPDCKTVV YNTGEIISHH TSRNFMKSKK ANKNFDFKVF TESVPSKIKG DSFIPVELYG LTKDESDYGW YTTSFKIDDN
501: DLSKKKGGKP NLRIASLGHA LHVWLNGEYL GNGHGSHEEK SFVFQKPVTL KEGENHLTML GVLTGFPDSG SYMEHRYTGP RSVSILGLGS GTLDLTEENK
601: WGNKVGMEGE RLGIHAEEGL KKVKWEKASG KEPGMTWYQT YFDAPESQSA AAIRMNGMGK GLIWVNGEGV GRYWMSFLSP LGQPTQIEYH IPRSFLKPKK
701: NLLVIFEEEP NVKPELIDFV IVNRDTVCSY IGENYTPSVR HWTRKNDQVQ AITDDVHLTA NLKCSGTKKI SAVEFASFGN PNGTCGNFTL GSCNAPVSKK
801: VVEKYCLGKA ECVIPVNKST FEQDKKDSCP KVEKKLAVQV KCGRDKKN

Arabidopsis Description

BGAL13Beta-galactosidase 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU9]
SUBAcon: [golgi,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.