Factsheet for VIT_04s0023g02690.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 7
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36360.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	82.13	82.13
Solyc02g084720.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	81.89	81.89
KRH76716	Soybean	nucleus	82.25	81.86
KRH08131	Soybean	nucleus	82.01	81.72
KRH69834	Soybean	extracellular, golgi	81.66	81.37
KRH28740	Soybean	nucleus	81.89	81.13
AT4G36360.1	Thale cress	endoplasmic reticulum, golgi, vacuole	78.82	77.8
CDX69219	Canola	vacuole	75.86	77.79
CDX75569	Canola	golgi, vacuole	76.09	77.75
Bra011677.1-P	Field mustard	golgi, vacuole	78.58	77.57
VIT_18s0001g13230.t01	Wine grape	extracellular, golgi	77.87	77.05
CDY59693	Canola	vacuole	77.99	76.99
VIT_03s0038g00150.t01	Wine grape	vacuole	76.45	74.86
GSMUA_Achr9P21610_001	Banana	extracellular, golgi	73.96	73.27
GSMUA_Achr4P06620_001	Banana	cytosol	55.62	72.98
GSMUA_Achr4P13580_001	Banana	golgi, vacuole	74.79	72.81
EER92805	Sorghum	vacuole	71.48	71.73
CDY59691	Canola	cytosol, nucleus, vacuole	29.59	71.02
Os03t0165400-01	Rice	vacuole	69.82	70.15
TraesCS4A01G022500.2	Wheat	golgi, vacuole	70.06	70.14
TraesCS4B01G280900.1	Wheat	golgi, vacuole	70.06	70.06
TraesCS4D01G279400.4	Wheat	vacuole	70.18	69.93
HORVU4Hr1G074280.4	Barley	vacuole	69.82	69.66
Zm00001d048440_P003	Maize	vacuole	71.01	69.04
CDY59725	Canola	cytosol	25.44	68.91
Zm00001d027803_P002	Maize	golgi, plasma membrane, vacuole	71.36	65.69
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	64.97	65.28
Bra017756.1-P	Field mustard	cytosol, nucleus, vacuole	23.31	64.8
VIT_11s0016g02200.t01	Wine grape	vacuole	62.72	63.4
VIT_06s0004g03020.t01	Wine grape	extracellular	54.56	54.49
VIT_07s0031g02480.t01	Wine grape	extracellular	53.02	52.89
VIT_07s0031g02590.t01	Wine grape	extracellular, golgi, vacuole	28.17	51.63
VIT_18s0001g02220.t01	Wine grape	vacuole	47.1	48.95
VIT_18s0001g02230.t01	Wine grape	golgi, vacuole	46.75	48.11
VIT_11s0016g00680.t01	Wine grape	vacuole	45.68	46.23
VIT_08s0007g04270.t01	Wine grape	extracellular, golgi, vacuole	45.33	45.98
VIT_03s0038g02360.t01	Wine grape	extracellular, golgi	44.26	44.9

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	EntrezGene:100232848
wikigene:100232848	Gene3D:2.60.120.260	Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	ProteinID:AAD45349
ProteinID:AAD45349.1	EMBL:AF159124	ProteinID:CBI17431	ProteinID:CBI17431.3	UniProt:D7SP52	EMBL:FN594959
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0004565	GO:GO:0005488	GO:GO:0005575
GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246
GO:GO:0030312	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF
InterPro:IPR000922	InterPro:IPR008979	EntrezGene:LOC100232848	wikigene:LOC100232848	InterPro:Lectin_gal-bd_dom	PFAM:PF01301
PFAM:PF02140	PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF79
SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	TIGR:TC68541	UniParc:UPI00015CB79A	ArrayExpress:VIT_04s0023g02690
EnsemblPlantsGene:VIT_04s0023g02690	EnsemblPlants:VIT_04s0023g02690.t01	unigene:Vvi.111	RefSeq:XP_002274449	RefSeq:XP_002274449.2	RefSeq:XP_010649088.1
SEG:seg	:	:	:	:	:

Description

Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:D7SP52]

Coordinates

chr4:+:19231609..19238208

Molecular Weight (calculated)

94123.8 Da

IEP (calculated)

6.992

GRAVY (calculated)

-0.251

Length

845 amino acids

Sequence
(BLAST)

001: MEANSVSKLF LVLCMVLQLG SQLIQCSVTY DRKAIVINGQ RRILISGSIH YPRSTPDMWE DIIQKAKDGG LDVVETYVFW NVHEPSPGSY NFEGRYDLVR
101: FIRTVQKAGL YAHLRIGPYV CAEWNFGGFP VWLKYVPGIS FRTDNEPFKR AMQGFTEKIV GLMKSERLFE SQGGPIILSQ IENEYGVQSK LLGDAGHDYM
201: TWAANMAVGL GTGVPWVMCK EEDAPDPVIN TCNGFYCDAF SPNKPYKPTI WTEAWSGWFN EFGGPLHQRP VQDLAFAVAR FIQKGGSFVN YYMYHGGTNF
301: GRTAGGPFIT TSYDYDAPID EYGLVRQPKY GHLKELHRSI KLCERALVSA DPIVSSLGSF QQAHVYSSDA GDCAAFLSNY DTKSSARVMF NNMHYNLPPW
401: SISILPDCRN AVFNTAKVGV QTAHMEMLPT NAEMLSWESY DEDISSLDDS STFTTLGLLE QINVTRDASD YLWYITRIDI GSSESFLRGG ELPTLILQTT
501: GHAVHVFING QLTGSAFGTR EYRRFTFTEK VNLHAGTNTI ALLSVAVGLP NVGGHFETWN TGILGPVALH GLNQGKWDLS WQRWTYKVGL KGEAMNLVSP
601: NGISSVDWMQ GSLAAQRQQP LTWHKAFFNA PEGDEPLALD MEGMGKGQVW INGQSIGRYW TAYANGNCQG CSYSGTYRPP KCQLGCGQPT QRWYHVPRSW
701: LKPTQNLLVV FEELGGDPSR ISLVRRSMTS VCADVFEYHP NIKNWHIESY GKTEELHKPK VHLRCGPGQS ISSIKFASYG TPLGTCGSFE QGPCHAPDSY
801: AIVEKRCIGR QRCAVTISNT NFAQDPCPNV LKRLSVEAVC APITS

Best Arabidopsis Sequence Match ( AT4G36360.1 )
(BLAST)

001: MREMGTGDSA SRLILWFCLG FLILGVGFVQ CGVTYDRKAL LINGQRRILF SGSIHYPRST PDMWEDLIQK AKDGGIDVIE TYVFWNLHEP SPGKYDFEGR
101: NDLVRFVKTI HKAGLYAHLR IGPYVCAEWN FGGFPVWLKY VPGISFRTDN EPFKRAMKGF TERIVELMKS ENLFESQGGP IILSQIENEY GRQGQLLGAE
201: GHNYMTWAAK MAIATETGVP WVMCKEDDAP DPVINTCNGF YCDSFAPNKP YKPLIWTEAW SGWFTEFGGP MHHRPVQDLA FGVARFIQKG GSFVNYYMYH
301: GGTNFGRTAG GPFVTTSYDY DAPIDEYGLI RQPKYGHLKE LHRAIKMCEK ALVSADPVVT SIGNKQQAHV YSAESGDCSA FLANYDTESA ARVLFNNVHY
401: NLPPWSISIL PDCRNAVFNT AKVGVQTSQM EMLPTDTKNF QWESYLEDLS SLDDSSTFTT HGLLEQINVT RDTSDYLWYM TSVDIGDSES FLHGGELPTL
501: IIQSTGHAVH IFVNGQLSGS AFGTRQNRRF TYQGKINLHS GTNRIALLSV AVGLPNVGGH FESWNTGILG PVALHGLSQG KMDLSWQKWT YQVGLKGEAM
601: NLAFPTNTPS IGWMDASLTV QKPQPLTWHK TYFDAPEGNE PLALDMEGMG KGQIWVNGES IGRYWTAFAT GDCSHCSYTG TYKPNKCQTG CGQPTQRWYH
701: VPRAWLKPSQ NLLVIFEELG GNPSTVSLVK RSVSGVCAEV SEYHPNIKNW QIESYGKGQT FHRPKVHLKC SPGQAIASIK FASFGTPLGT CGSYQQGECH
801: AATSYAILER KCVGKARCAV TISNSNFGKD PCPNVLKRLT VEAVCAPETS VSTWRP

Arabidopsis Description

BGAL3Beta-galactosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV9]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.