Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 7
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400075691 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G36360.1 | PGSC0003DMT400075691 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g084720.2.1 | Tomato | endoplasmic reticulum, golgi, vacuole | 99.17 | 99.17 |
| VIT_04s0023g02690.t01 | Wine grape | extracellular, golgi | 82.13 | 82.13 |
| KRH08131 | Soybean | nucleus | 78.46 | 78.18 |
| KRH76716 | Soybean | nucleus | 78.46 | 78.09 |
| KRH28740 | Soybean | nucleus | 78.22 | 77.49 |
| KRH69834 | Soybean | extracellular, golgi | 77.4 | 77.12 |
| CDX75569 | Canola | golgi, vacuole | 73.61 | 75.21 |
| Bra011677.1-P | Field mustard | golgi, vacuole | 75.98 | 75.0 |
| CDX69219 | Canola | vacuole | 73.14 | 75.0 |
| AT4G36360.1 | Thale cress | endoplasmic reticulum, golgi, vacuole | 75.98 | 75.0 |
| CDY59693 | Canola | vacuole | 74.56 | 73.6 |
| PGSC0003DMT400079498 | Potato | vacuole | 61.89 | 71.94 |
| GSMUA_Achr4P06620_001 | Banana | cytosol | 54.32 | 71.27 |
| PGSC0003DMT400009496 | Potato | nucleus, peroxisome, vacuole | 45.44 | 70.98 |
| GSMUA_Achr9P21610_001 | Banana | extracellular, golgi | 71.36 | 70.69 |
| GSMUA_Achr4P13580_001 | Banana | golgi, vacuole | 71.95 | 70.05 |
| EER92805 | Sorghum | vacuole | 69.11 | 69.36 |
| Os03t0165400-01 | Rice | vacuole | 68.99 | 69.32 |
| TraesCS4B01G280900.1 | Wheat | golgi, vacuole | 67.93 | 67.93 |
| CDY59691 | Canola | cytosol, nucleus, vacuole | 28.28 | 67.9 |
| TraesCS4A01G022500.2 | Wheat | golgi, vacuole | 67.81 | 67.89 |
| TraesCS4D01G279400.4 | Wheat | vacuole | 68.05 | 67.81 |
| HORVU4Hr1G074280.4 | Barley | vacuole | 67.93 | 67.77 |
| Zm00001d048440_P003 | Maize | vacuole | 68.99 | 67.09 |
| CDY59725 | Canola | cytosol | 24.14 | 65.38 |
| Zm00001d027803_P002 | Maize | golgi, plasma membrane, vacuole | 69.47 | 63.94 |
| PGSC0003DMT400000899 | Potato | nucleus, peroxisome, vacuole | 50.3 | 63.43 |
| PGSC0003DMT400083896 | Potato | extracellular | 62.49 | 63.23 |
| PGSC0003DMT400012359 | Potato | golgi, vacuole | 62.37 | 62.74 |
| PGSC0003DMT400006654 | Potato | golgi, vacuole | 61.78 | 62.29 |
| Bra017756.1-P | Field mustard | cytosol, nucleus, vacuole | 22.37 | 62.17 |
| PGSC0003DMT400011458 | Potato | cytosol, nucleus, peroxisome | 28.28 | 53.47 |
| PGSC0003DMT400020941 | Potato | extracellular | 53.37 | 52.93 |
| PGSC0003DMT400039333 | Potato | extracellular, golgi | 49.7 | 50.24 |
| PGSC0003DMT400023852 | Potato | extracellular | 36.45 | 48.97 |
| PGSC0003DMT400057597 | Potato | golgi, vacuole | 39.88 | 48.63 |
| PGSC0003DMT400023851 | Potato | nucleus, peroxisome, vacuole | 41.54 | 48.48 |
| PGSC0003DMT400059880 | Potato | cytosol | 44.02 | 48.31 |
| PGSC0003DMT400067956 | Potato | extracellular | 49.11 | 46.52 |
| PGSC0003DMT400015841 | Potato | endoplasmic reticulum, golgi, vacuole | 40.47 | 42.27 |
| PGSC0003DMT400031178 | Potato | vacuole | 41.3 | 42.1 |
Protein Annotations
| KEGG:00052+3.2.1.23 | KEGG:00511+3.2.1.23 | KEGG:00531+3.2.1.23 | KEGG:00600+3.2.1.23 | KEGG:00604+3.2.1.23 | EntrezGene:102598773 |
| Gene3D:2.60.120.260 | Gene3D:2.60.120.740 | MapMan:21.3.2.2.2 | Gene3D:3.20.20.80 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004553 | GO:GO:0004565 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005623 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009505 | GO:GO:0016787 | GO:GO:0016798 |
| GO:GO:0030246 | GO:GO:0030312 | InterPro:Galactose-bd-like_sf | InterPro:Gly_Hdrlase_35_cat | InterPro:Glyco_hydro_35_CS | InterPro:Glycoside_Hdrlase_35 |
| InterPro:Glycoside_hydrolase_SF | InterPro:IPR000922 | InterPro:IPR008979 | InterPro:Lectin_gal-bd_dom | UniProt:M0ZVL1 | PFAM:PF01301 |
| PFAM:PF02140 | EnsemblPlantsGene:PGSC0003DMG400003537 | PGSC:PGSC0003DMG400003537 | EnsemblPlants:PGSC0003DMT400009096 | PRINTS:PR00742 | ScanProsite:PS01182 |
| PFscan:PS50228 | PANTHER:PTHR23421 | PANTHER:PTHR23421:SF79 | SUPFAM:SSF49785 | SUPFAM:SSF51445 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0002962209 | RefSeq:XP_006340680.1 | : | : | : |
Description
Beta-galactosidase [Source:PGSC_GENE;Acc:PGSC0003DMG400003537]
Coordinates
chr2:-:39963359..39970013
Molecular Weight (calculated)
94133.8 Da
IEP (calculated)
7.178
GRAVY (calculated)
-0.267
Length
845 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVNSVQKWV LLWCIVLFIS SGLVHCDVTY DRKAIVINGQ RRLLFSGSIH YPRSTPEMWE DLINKAKEGG LDVVETYVFW NVHEPSPGNY NFEGRYDLVR
101: FVKTIQKAGL YAHLRIGPYV CAEWNFGGFP VWLKYVPGIS FRADNEPFKN AMKGYAEKIV NLMKSHNLFE SQGGPIILSQ IENEYGPQAK VLGAPGHQYA
201: TWAANMAVGL DTGVPWVMCK EEDAPDPVIN TCNGFYCDNF FPNKPYKPAI WTEAWSGWFS EFGGPLHQRP VQDLAFAVAQ FIQRGGSFVN YYMYHGGTNF
301: GRTAGGPFIT TSYDYDAPID EYGLIRQPKY GHLKELHRAV KMCEKSIVSA DPAITSLGNL QQAYVYSSET GECAAFLSNN DWKSAARVMF NNMHYNLPPW
401: SISILPDCRN VVFNTAKVGV QTSKMEMLPT NSEMLSWETY SEDMSALDDS SSIRSFGLLE QINVTRDTSD YLWYITSVDI GSTESFLHGG ELPTLIVETT
501: GHAMHVFING QLSGSAFGTR KNRRFVFKGK VNLRAGSNRI ALLSVAVGLP NIGGHFETWS TGVLGPVAIQ GLDQGKWDLS WAKWTYQVGL KGEAMNLVST
601: NGISAVDWMQ GSLIAQKQQP LTWHKAYFNT PEGDEPLALD MSSMGKGQVW INGQSIGRYW TAYATGDCNG CQYSGTFRPP KCQLGCGEPT QKWYHVPRSW
701: LKPTQNLLVL FEELGGDPTR ISLVKRSVTN VCSNVAEYHP NIKNWQIENY GKTEEFHLPK VRIHCAPGQS ISSIKFASFG TPLGTCGSFK QGTCHAPDSH
801: AVVEKKCLGR QSCAVTISNS NFGEDPCPNV LKRLSVEAHC TPTQN
101: FVKTIQKAGL YAHLRIGPYV CAEWNFGGFP VWLKYVPGIS FRADNEPFKN AMKGYAEKIV NLMKSHNLFE SQGGPIILSQ IENEYGPQAK VLGAPGHQYA
201: TWAANMAVGL DTGVPWVMCK EEDAPDPVIN TCNGFYCDNF FPNKPYKPAI WTEAWSGWFS EFGGPLHQRP VQDLAFAVAQ FIQRGGSFVN YYMYHGGTNF
301: GRTAGGPFIT TSYDYDAPID EYGLIRQPKY GHLKELHRAV KMCEKSIVSA DPAITSLGNL QQAYVYSSET GECAAFLSNN DWKSAARVMF NNMHYNLPPW
401: SISILPDCRN VVFNTAKVGV QTSKMEMLPT NSEMLSWETY SEDMSALDDS SSIRSFGLLE QINVTRDTSD YLWYITSVDI GSTESFLHGG ELPTLIVETT
501: GHAMHVFING QLSGSAFGTR KNRRFVFKGK VNLRAGSNRI ALLSVAVGLP NIGGHFETWS TGVLGPVAIQ GLDQGKWDLS WAKWTYQVGL KGEAMNLVST
601: NGISAVDWMQ GSLIAQKQQP LTWHKAYFNT PEGDEPLALD MSSMGKGQVW INGQSIGRYW TAYATGDCNG CQYSGTFRPP KCQLGCGEPT QKWYHVPRSW
701: LKPTQNLLVL FEELGGDPTR ISLVKRSVTN VCSNVAEYHP NIKNWQIENY GKTEEFHLPK VRIHCAPGQS ISSIKFASFG TPLGTCGSFK QGTCHAPDSH
801: AVVEKKCLGR QSCAVTISNS NFGEDPCPNV LKRLSVEAHC TPTQN
001: MREMGTGDSA SRLILWFCLG FLILGVGFVQ CGVTYDRKAL LINGQRRILF SGSIHYPRST PDMWEDLIQK AKDGGIDVIE TYVFWNLHEP SPGKYDFEGR
101: NDLVRFVKTI HKAGLYAHLR IGPYVCAEWN FGGFPVWLKY VPGISFRTDN EPFKRAMKGF TERIVELMKS ENLFESQGGP IILSQIENEY GRQGQLLGAE
201: GHNYMTWAAK MAIATETGVP WVMCKEDDAP DPVINTCNGF YCDSFAPNKP YKPLIWTEAW SGWFTEFGGP MHHRPVQDLA FGVARFIQKG GSFVNYYMYH
301: GGTNFGRTAG GPFVTTSYDY DAPIDEYGLI RQPKYGHLKE LHRAIKMCEK ALVSADPVVT SIGNKQQAHV YSAESGDCSA FLANYDTESA ARVLFNNVHY
401: NLPPWSISIL PDCRNAVFNT AKVGVQTSQM EMLPTDTKNF QWESYLEDLS SLDDSSTFTT HGLLEQINVT RDTSDYLWYM TSVDIGDSES FLHGGELPTL
501: IIQSTGHAVH IFVNGQLSGS AFGTRQNRRF TYQGKINLHS GTNRIALLSV AVGLPNVGGH FESWNTGILG PVALHGLSQG KMDLSWQKWT YQVGLKGEAM
601: NLAFPTNTPS IGWMDASLTV QKPQPLTWHK TYFDAPEGNE PLALDMEGMG KGQIWVNGES IGRYWTAFAT GDCSHCSYTG TYKPNKCQTG CGQPTQRWYH
701: VPRAWLKPSQ NLLVIFEELG GNPSTVSLVK RSVSGVCAEV SEYHPNIKNW QIESYGKGQT FHRPKVHLKC SPGQAIASIK FASFGTPLGT CGSYQQGECH
801: AATSYAILER KCVGKARCAV TISNSNFGKD PCPNVLKRLT VEAVCAPETS VSTWRP
101: NDLVRFVKTI HKAGLYAHLR IGPYVCAEWN FGGFPVWLKY VPGISFRTDN EPFKRAMKGF TERIVELMKS ENLFESQGGP IILSQIENEY GRQGQLLGAE
201: GHNYMTWAAK MAIATETGVP WVMCKEDDAP DPVINTCNGF YCDSFAPNKP YKPLIWTEAW SGWFTEFGGP MHHRPVQDLA FGVARFIQKG GSFVNYYMYH
301: GGTNFGRTAG GPFVTTSYDY DAPIDEYGLI RQPKYGHLKE LHRAIKMCEK ALVSADPVVT SIGNKQQAHV YSAESGDCSA FLANYDTESA ARVLFNNVHY
401: NLPPWSISIL PDCRNAVFNT AKVGVQTSQM EMLPTDTKNF QWESYLEDLS SLDDSSTFTT HGLLEQINVT RDTSDYLWYM TSVDIGDSES FLHGGELPTL
501: IIQSTGHAVH IFVNGQLSGS AFGTRQNRRF TYQGKINLHS GTNRIALLSV AVGLPNVGGH FESWNTGILG PVALHGLSQG KMDLSWQKWT YQVGLKGEAM
601: NLAFPTNTPS IGWMDASLTV QKPQPLTWHK TYFDAPEGNE PLALDMEGMG KGQIWVNGES IGRYWTAFAT GDCSHCSYTG TYKPNKCQTG CGQPTQRWYH
701: VPRAWLKPSQ NLLVIFEELG GNPSTVSLVK RSVSGVCAEV SEYHPNIKNW QIESYGKGQT FHRPKVHLKC SPGQAIASIK FASFGTPLGT CGSYQQGECH
801: AATSYAILER KCVGKARCAV TISNSNFGKD PCPNVLKRLT VEAVCAPETS VSTWRP
Arabidopsis Description
BGAL3Beta-galactosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV9]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.