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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 5
  • golgi 7
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:plastid, secretory
BaCelLo:secretory
EpiLoc:golgi
iPSORT:secretory
MultiLoc:vacuole
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:golgi
extracellular: 24773703
msms PMID: 24773703 doi
T Bengtsson, D Weighill, E Proux-Wéra, F Levander, S Resjö, DD Burra, LI Moushib, PE Hedley, E Liljeroth, D Jacobson, E Alexandersson, E Andreasson
Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Box 102, SE-230 53 Alnarp, Sweden. erik.alexandersson@slu.se.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc11g069270.1.1 Tomato extracellular 95.89 95.89
VIT_06s0004g03020.t01 Wine grape extracellular 74.77 75.3
KRH22910 Soybean nucleus 72.3 73.33
KRH29942 Soybean extracellular, golgi, vacuole 71.95 73.15
KRG89008 Soybean nucleus 70.54 71.89
KRH26431 Soybean golgi, vacuole 70.77 71.79
CDY15749 Canola golgi, vacuole 69.13 69.79
Bra011946.1-P Field mustard golgi, vacuole 68.78 69.35
Bra000493.1-P Field mustard golgi, vacuole 68.66 69.31
CDY31204 Canola golgi, vacuole 68.54 69.19
AT2G28470.1 Thale cress endoplasmic reticulum, golgi, vacuole 69.13 69.13
CDX83288 Canola golgi, vacuole 68.19 68.76
CDY04567 Canola golgi, vacuole 68.54 68.71
GSMUA_Achr4P20830_001 Banana golgi, vacuole 69.6 68.08
GSMUA_Achr4P22060_001 Banana golgi, vacuole 64.79 65.71
EER92534 Sorghum endoplasmic reticulum, golgi 65.85 65.23
TraesCS4A01G083700.3 Wheat extracellular 65.26 65.18
TraesCS4B01G220500.1 Wheat golgi 65.14 65.06
HORVU0Hr1G008780.10 Barley plasma membrane, vacuole 65.14 63.87
TraesCS4D01G220800.2 Wheat vacuole 64.91 63.78
Zm00001d028474_P002 Maize vacuole 65.96 62.58
Os03t0255100-01 Rice extracellular 65.85 58.68
PGSC0003DMT400000899 Potato nucleus, peroxisome, vacuole 44.13 56.12
PGSC0003DMT400083896 Potato extracellular 54.58 55.69
PGSC0003DMT400006654 Potato golgi, vacuole 54.58 55.49
PGSC0003DMT400079498 Potato vacuole 47.18 55.3
PGSC0003DMT400012359 Potato golgi, vacuole 54.46 55.24
PGSC0003DMT400057597 Potato golgi, vacuole 44.01 54.11
PGSC0003DMT400009496 Potato nucleus, peroxisome, vacuole 34.27 53.97
PGSC0003DMT400009096 Potato endoplasmic reticulum, golgi, vacuole 52.93 53.37
PGSC0003DMT400059880 Potato cytosol 45.07 49.87
PGSC0003DMT400067956 Potato extracellular 52.11 49.78
PGSC0003DMT400039333 Potato extracellular, golgi 48.83 49.76
PGSC0003DMT400023851 Potato nucleus, peroxisome, vacuole 40.38 47.51
PGSC0003DMT400023852 Potato extracellular 33.8 45.79
PGSC0003DMT400011458 Potato cytosol, nucleus, peroxisome 23.59 44.97
PGSC0003DMT400031178 Potato vacuole 40.85 41.98
PGSC0003DMT400015841 Potato endoplasmic reticulum, golgi, vacuole 39.55 41.66
Protein Annotations
KEGG:00052+3.2.1.23KEGG:00511+3.2.1.23KEGG:00531+3.2.1.23KEGG:00600+3.2.1.23KEGG:00604+3.2.1.23EntrezGene:102604796
Gene3D:2.60.120.260Gene3D:2.60.120.740MapMan:21.3.2.2.2Gene3D:3.20.20.80GO:GO:0003674GO:GO:0003824
GO:GO:0004553GO:GO:0004565GO:GO:0005488GO:GO:0005575GO:GO:0005975GO:GO:0008150
GO:GO:0008152GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0016798GO:GO:0030246
InterPro:Galactose-bd-like_sfInterPro:Gly_Hdrlase_35_catInterPro:Glyco_hydro_35_CSInterPro:Glycoside_Hdrlase_35InterPro:Glycoside_hydrolase_SFInterPro:IPR000922
InterPro:IPR008979InterPro:Lectin_gal-bd_domUniProt:M1AEB9PFAM:PF01301PFAM:PF02140EnsemblPlantsGene:PGSC0003DMG400008109
PGSC:PGSC0003DMG400008109EnsemblPlants:PGSC0003DMT400020941PRINTS:PR00742ScanProsite:PS01182PFscan:PS50228PANTHER:PTHR23421
PANTHER:PTHR23421:SF74SUPFAM:SSF49785SUPFAM:SSF51445TMHMM:TMhelixUniParc:UPI0002963EFCRefSeq:XP_006340153.1
SEG:seg:::::
Description
Beta-galactosidase [Source:PGSC_GENE;Acc:PGSC0003DMG400008109]
Coordinates
chr11:+:41197787..41206297
Molecular Weight (calculated)
93097.4 Da
IEP (calculated)
7.077
GRAVY (calculated)
-0.187
Length
852 amino acids
Sequence
(BLAST)
001: MERKSGYCLS VIMLVFGVVF LHCLVMTSFA ASVTYDHRAL VIDGKRRVLI SGSIHYPRST PDMWPDLIQK SKDGGLDVIE TYVFWNLHEP VRNLYDFEGR
101: KDLINFVKLV EKAGLFVHIR IGPYVCAEWN YGGFPLWLHF IPGIEFRTDN EPFKAEMKRF TTKIVDMIKQ ENLFASQGGP VILSQIENEY GNGDIESRYG
201: PRAKPYVNWA ASMATTLDTG VPWVMCQQPD APPSVINTCN GFYCDQFKQN SDKTPKMWTE NWTGWFLSFG GPVPYRPVED IAFAVARFFQ RGGTFQNYYM
301: YHGGTNFGRT SGGPFIATSY DYDAPLDEYG LIRQPKWGHL KDLHKAIKLC EAAMVATDPN ITSLGSTIEA SVYKTDSQCA AFLANTATQS DAAVSFNGNS
401: YHLPPWSVSI LPDCKNVAFN TAKINSVSTI STFVTQSSEA DASGASLSGW TSVNEPVGIS SENAFTRMGL VEQINITADK SDYLWYSLSV NIKNDEPFLQ
501: DGSATVLHVK TLGHVLHAFI NGKLSGSGKG NSGHSNFTIE VPVTLVPGVN KIDLLSATVG LQNYGAFFDL KGAGITGPVQ LKGFKNGSTT DLSSKQWTYQ
601: VGLKGEEMGL SSGGSTLWKS QTELPTNQPL IWYKASFDAP AGDTPLSMDF TGMGKGEAWV NGQSIGRFWP TYTAPNSGCT DPCNYRGGYN ANKCLKNCGK
701: PSQLLYHVPR SWLKSSGNVL VLFEEMGGDP TKLSFATREI QSVCSRISEA HPLPIDMWAS EDDARNKSGP TLSLECPHPN QVISSIKFAS FGTPQGTCGS
801: FIHGRCSSSN ALSIVKKACI GSKSCSLGVS INVFGEPCKG VAKSLAVEAS CT
Best Arabidopsis Sequence Match ( AT2G28470.3 )
(BLAST)
001: MEIAAKMVKV RKMEMILLLI LVIVVAATAA NVTYDHRALV IDGKRKVLIS GSIHYPRSTP EMWPELIQKS KDGGLDVIET YVFWSGHEPE KNKYNFEGRY
101: DLVKFVKLAA KAGLYVHLRI GPYVCAEWNY GGFPVWLHFV PGIKFRTDNE PFKEEMQRFT TKIVDLMKQE KLYASQGGPI ILSQIENEYG NIDSAYGAAA
201: KSYIKWSASM ALSLDTGVPW NMCQQTDAPD PMINTCNGFY CDQFTPNSNN KPKMWTENWS GWFLGFGDPS PYRPVEDLAF AVARFYQRGG TFQNYYMYHG
301: GTNFDRTSGG PLISTSYDYD APIDEYGLLR QPKWGHLRDL HKAIKLCEDA LIATDPTITS LGSNLEAAVY KTESGSCAAF LANVDTKSDA TVTFNGKSYN
401: LPAWSVSILP DCKNVAFNTA KINSATESTA FARQSLKPDG GSSAELGSQW SYIKEPIGIS KADAFLKPGL LEQINTTADK SDYLWYSLRT DIKGDETFLD
501: EGSKAVLHIE SLGQVVYAFI NGKLAGSGHG KQKISLDIPI NLVTGTNTID LLSVTVGLAN YGAFFDLVGA GITGPVTLKS AKGGSSIDLA SQQWTYQVGL
601: KGEDTGLATV DSSEWVSKSP LPTKQPLIWY KTTFDAPSGS EPVAIDFTGT GKGIAWVNGQ SIGRYWPTSI AGNGGCTESC DYRGSYRANK CLKNCGKPSQ
701: TLYHVPRSWL KPSGNILVLF EEMGGDPTQI SFATKQTGSN LCLTVSQSHP PPVDTWTSDS KISNRNRTRP VLSLKCPIST QVIFSIKFAS FGTPKGTCGS
801: FTQGHCNSSR SLSLVQKACI GLRSCNVEVS TRVFGEPCRG VVKSLAVEAS CS
Arabidopsis Description
BGAL8Beta-galactosidase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV4]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.