Factsheet for Solyc11g069270.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 7
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

extracellular: 22364583
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020941	Potato	extracellular	95.89	95.89
VIT_06s0004g03020.t01	Wine grape	extracellular	74.18	74.7
KRH22910	Soybean	nucleus	72.3	73.33
KRH29942	Soybean	extracellular, golgi, vacuole	72.07	73.27
KRG89008	Soybean	nucleus	70.77	72.13
KRH26431	Soybean	golgi, vacuole	70.89	71.9
Bra000493.1-P	Field mustard	golgi, vacuole	68.31	68.96
CDY31204	Canola	golgi, vacuole	68.31	68.96
CDY15749	Canola	golgi, vacuole	68.31	68.96
Bra011946.1-P	Field mustard	golgi, vacuole	68.19	68.76
AT2G28470.1	Thale cress	endoplasmic reticulum, golgi, vacuole	68.43	68.43
CDX83288	Canola	golgi, vacuole	67.72	68.28
CDY04567	Canola	golgi, vacuole	67.96	68.12
GSMUA_Achr4P20830_001	Banana	golgi, vacuole	69.25	67.74
GSMUA_Achr4P22060_001	Banana	golgi, vacuole	64.2	65.12
EER92534	Sorghum	endoplasmic reticulum, golgi	65.73	65.12
TraesCS4B01G220500.1	Wheat	golgi	64.91	64.83
TraesCS4A01G083700.3	Wheat	extracellular	64.91	64.83
HORVU0Hr1G008780.10	Barley	plasma membrane, vacuole	64.79	63.52
TraesCS4D01G220800.2	Wheat	vacuole	64.55	63.44
Zm00001d028474_P002	Maize	vacuole	66.08	62.69
Os03t0255100-01	Rice	extracellular	65.85	58.68
Solyc02g078950.2.1	Tomato	vacuole	55.16	55.69
Solyc12g008840.1.1	Tomato	extracellular	46.95	55.25
Solyc03g121540.2.1	Tomato	nucleus	54.11	55.01
Solyc12g044880.1.1	Tomato	golgi, vacuole	53.87	54.97
Solyc01g110000.2.1	Tomato	nucleus	46.36	54.33
Solyc06g062580.2.1	Tomato	nucleus	53.52	54.22
Solyc04g080840.1.1	Tomato	extracellular, golgi	45.77	53.06
Solyc02g084720.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	52.11	52.54
Solyc03g019890.2.1	Tomato	nucleus	50.35	49.31
Solyc11g018490.1.1	Tomato	cytosol	43.66	49.27
Solyc07g042220.1.1	Tomato	unclear	47.3	49.27
Solyc11g018500.1.1	Tomato	cytosol, golgi, vacuole	40.14	49.21
Solyc09g092160.2.1	Tomato	extracellular	51.17	48.88
Solyc01g111540.2.1	Tomato	unclear	40.61	41.64
Solyc10g055470.1.1	Tomato	vacuole	40.14	41.25

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	UniProt:E3UVW7	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0004565	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	GO:GO:0030312
InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	EMBL:HM627535
InterPro:IPR000922	InterPro:IPR008979	InterPro:Lectin_gal-bd_dom	PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742
ScanProsite:PS01182	PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF74	SUPFAM:SSF49785	SUPFAM:SSF51445
EnsemblPlantsGene:Solyc11g069270.1	EnsemblPlants:Solyc11g069270.1.1	TMHMM:TMhelix	UniParc:UPI0001E6E41F	SEG:seg	:

Description

Beta-galactosidase 8 [Source:Projected from Arabidopsis thaliana (AT2G28470) UniProtKB/Swiss-Prot;Acc:Q9SCV4]

Coordinates

chr11:+:53900203..53906734

Molecular Weight (calculated)

93218.3 Da

IEP (calculated)

7.194

GRAVY (calculated)

-0.226

Length

852 amino acids

Sequence
(BLAST)

001: MERRSGYCLS VIMLVFGVVF LHCLVMTSFA ANVTYDHRAL VVDGRRRVLI SGSIHYPRST PDMWPDLIQK SKDGGLDVIE TYVFWNLHEP VRNQYDFEGR
101: KDLINFVKLV EKAGLFVHIR IGPYVCAEWN YGGFPLWLHF IPGIEFRTDN EPFKAEMKRF TAKIVDMIKQ ENLYASQGGP VILSQIENEY GNGDIESRYG
201: PRAKPYVNWA ASMATSLNTG VPWVMCQQPD APPSVINTCN GFYCDQFKQN SDKTPKMWTE NWTGWFLSFG GPVPYRPVED IAFAVARFFQ RGGTFQNYYM
301: YHGGTNFGRT SGGPFIATSY DYDAPLDEYG LINQPKWGHL KDLHKAIKLC EAAMVATEPN ITSLGSNIEV SVYKTDSQCA AFLANTATQS DAAVSFNGNS
401: YHLPPWSVSI LPDCKNVAFS TAKINSASTI STFVTRSSEA DASGGSLSGW TSVNEPVGIS NENAFTRMGL LEQINTTADK SDYLWYSLSV NIKNDEPFLQ
501: DGSATVLHVK TLGHVLHAYI NGKLSGSGKG NSRHSNFTIE VPVTLVPGEN KIDLLSATVG LQNYGAFFDL KGAGITGPVQ LKGFKNGSTT DLSSKQWTYQ
601: VGLKGEDLGL SNGGSTLWKS QTALPTNQPL IWYKASFDAP AGDTPLSMDF TGMGKGEAWV NGQSIGRFWP AYIAPNDGCT DPCNYRGGYN AEKCLKNCGK
701: PSQLLYHVPR SWLKSSGNVL VLFEEMGGDP TKLSFATREI QSVCSRISDA HPLPIDMWAS EDDARKKSGP TLSLECPHPN QVISSIKFAS FGTPQGTCGS
801: FIHGRCSSSN ALSIVKKACI GSKSCSLGVS INAFGDPCKG VAKSLAVEAS CT

Best Arabidopsis Sequence Match ( AT2G28470.3 )
(BLAST)

001: MEIAAKMVKV RKMEMILLLI LVIVVAATAA NVTYDHRALV IDGKRKVLIS GSIHYPRSTP EMWPELIQKS KDGGLDVIET YVFWSGHEPE KNKYNFEGRY
101: DLVKFVKLAA KAGLYVHLRI GPYVCAEWNY GGFPVWLHFV PGIKFRTDNE PFKEEMQRFT TKIVDLMKQE KLYASQGGPI ILSQIENEYG NIDSAYGAAA
201: KSYIKWSASM ALSLDTGVPW NMCQQTDAPD PMINTCNGFY CDQFTPNSNN KPKMWTENWS GWFLGFGDPS PYRPVEDLAF AVARFYQRGG TFQNYYMYHG
301: GTNFDRTSGG PLISTSYDYD APIDEYGLLR QPKWGHLRDL HKAIKLCEDA LIATDPTITS LGSNLEAAVY KTESGSCAAF LANVDTKSDA TVTFNGKSYN
401: LPAWSVSILP DCKNVAFNTA KINSATESTA FARQSLKPDG GSSAELGSQW SYIKEPIGIS KADAFLKPGL LEQINTTADK SDYLWYSLRT DIKGDETFLD
501: EGSKAVLHIE SLGQVVYAFI NGKLAGSGHG KQKISLDIPI NLVTGTNTID LLSVTVGLAN YGAFFDLVGA GITGPVTLKS AKGGSSIDLA SQQWTYQVGL
601: KGEDTGLATV DSSEWVSKSP LPTKQPLIWY KTTFDAPSGS EPVAIDFTGT GKGIAWVNGQ SIGRYWPTSI AGNGGCTESC DYRGSYRANK CLKNCGKPSQ
701: TLYHVPRSWL KPSGNILVLF EEMGGDPTQI SFATKQTGSN LCLTVSQSHP PPVDTWTSDS KISNRNRTRP VLSLKCPIST QVIFSIKFAS FGTPKGTCGS
801: FTQGHCNSSR SLSLVQKACI GLRSCNVEVS TRVFGEPCRG VVKSLAVEAS CS

Arabidopsis Description

BGAL8Beta-galactosidase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV4]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.