Factsheet for Solyc07g042220.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 6
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059880	Potato	cytosol	89.61	95.19
CDX98327	Canola	golgi, vacuole	23.72	77.29
CDY70160	Canola	vacuole	45.84	68.81
VIT_11s0016g00680.t01	Wine grape	vacuole	69.68	68.26
CDY65885	Canola	vacuole	67.36	67.11
AT1G31740.1	Thale cress	vacuole	63.45	66.62
CDY34975	Canola	golgi, plasma membrane, vacuole	63.81	66.24
KRH19351	Soybean	extracellular, golgi, vacuole	66.87	66.14
CDY28339	Canola	vacuole	63.57	65.99
CDX67790	Canola	vacuole	65.4	65.64
CDX93659	Canola	vacuole	65.53	65.53
KRH02579	Soybean	extracellular, golgi, vacuole	66.87	64.81
CDY69031	Canola	cytosol, plastid, vacuole	47.68	62.8
AT5G20710.1	Thale cress	vacuole	62.22	61.62
Bra018721.1-P	Field mustard	extracellular, golgi, vacuole	54.89	61.34
Bra002325.1-P	Field mustard	golgi, vacuole	61.61	60.8
Bra003128.1-P	Field mustard	extracellular, vacuole	51.71	59.83
GSMUA_Achr4P25980_001	Banana	extracellular, golgi, vacuole	44.74	59.13
CDY32304	Canola	cytosol	63.69	59.07
GSMUA_Achr4P26030_001	Banana	cytosol, peroxisome, vacuole	37.78	58.3
GSMUA_Achr5P11870_001	Banana	extracellular, golgi	55.87	58.22
Os06t0628500-00	Rice	extracellular, golgi, vacuole	19.68	54.76
GSMUA_Achr2P21790_001	Banana	golgi, vacuole	56.11	54.58
HORVU2Hr1G057440.2	Barley	vacuole	34.84	54.39
CDY53917	Canola	plastid	64.06	50.92
HORVU1Hr1G003210.2	Barley	golgi, vacuole	51.47	50.91
Os10t0330600-01	Rice	extracellular	51.34	50.72
Os10t0340600-01	Rice	extracellular, golgi, vacuole	51.34	50.72
HORVU1Hr1G003200.1	Barley	golgi, vacuole	51.1	50.36
TraesCS1A01G024100.1	Wheat	vacuole	50.86	50.24
Zm00001d043393_P001	Maize	extracellular	50.37	50.12
GSMUA_Achr5P11850_001	Banana	extracellular, golgi	55.01	50.11
TraesCS1D01G024200.1	Wheat	vacuole	50.73	50.06
EES03081	Sorghum	extracellular	50.73	50.0
TraesCS1B01G030400.1	Wheat	vacuole	50.73	49.94
Solyc12g008840.1.1	Tomato	extracellular	44.13	49.86
CDX67763	Canola	golgi, plasma membrane, vacuole	44.62	47.34
Solyc11g069270.1.1	Tomato	extracellular	49.27	47.3
Solyc01g110000.2.1	Tomato	nucleus	41.93	47.18
Solyc04g080840.1.1	Tomato	extracellular, golgi	42.3	47.07
Solyc12g044880.1.1	Tomato	golgi, vacuole	47.8	46.83
Solyc02g084720.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	47.55	46.04
Solyc06g062580.2.1	Tomato	nucleus	47.31	46.02
Solyc03g121540.2.1	Tomato	nucleus	47.07	45.94
Solyc11g018500.1.1	Tomato	cytosol, golgi, vacuole	38.39	45.18
Solyc02g078950.2.1	Tomato	vacuole	44.99	43.6
Solyc03g019890.2.1	Tomato	nucleus	44.99	42.3
Solyc11g018490.1.1	Tomato	cytosol	38.88	42.12
Solyc10g055470.1.1	Tomato	vacuole	40.71	40.17
Solyc09g092160.2.1	Tomato	extracellular	43.03	39.46
Solyc01g111540.2.1	Tomato	unclear	39.61	38.99

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0004565	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	GO:GO:0030246	GO:GO:0030312	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS
InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979	UniProt:K4CE85	InterPro:Lectin_gal-bd_dom
PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228	PANTHER:PTHR23421
PANTHER:PTHR23421:SF88	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc07g042220.1	EnsemblPlants:Solyc07g042220.1.1
UniParc:UPI000276BE08	SEG:seg	:	:	:	:

Description

Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:K4CE85]

Coordinates

chr7:+:55284732..55289072

Molecular Weight (calculated)

91792.3 Da

IEP (calculated)

5.339

GRAVY (calculated)

-0.354

Length

818 amino acids

Sequence
(BLAST)

001: MKICLFYIFL LYLVSSIHAY QVSHDGRAIT INGERRILLS GSIHYPRSTP EMWPDLIKKS KEGGLDAIET YVFWNAHEPS RREYDFSGNL DLIRFLKTIQ
101: DEGLYAVLRI GPYVCAEWNY GGFPVWLHNM AGIELRTANG VYMNEMENFT RLIVDMVKEE KLFASQGGPI ILAQIENEFG NVQEAYGDAG KAYIQWCSNM
201: AQSLNVGVPW IMCQQADAPQ PMINTCNGYY CDEFTPNNPN SPKMWTENWT GWFKNWGGKD PLRTTEDLAY SVARFYQTGG TFQNYYMYHG GTNFGRTSGG
301: PYITTTYDYN APLDEFGNLA QPKYGHLKEL HDVLHSMEKI LASGTVNNTN LGNSVAVTMY TLDGESSCFF SNANETTDAT ISYKNVYYNV PAWSVTILPD
401: CITEVYNTAK VNTQTSVMVK KLNNAENEPI PLQWSWRPEM IDDAIILGRG QSSFHELIDQ KVVNDTSDYL WYMTNVYINN TDPIWSDDMK LRVNASGHVL
501: HAYVNGKYLG SDWATYGIFN YVFEKKVKLN PGKNSISLLS ATVGFKNYGP HFDTIESGIL GPVEIIGKNG DESIIKDLSS HKWSYTVGLK GINNKLFDEY
601: NTGKWDSHDV PINRMMTWYK TTFKAPLGNA PVVVDMQGLG KGTAWVNGQS IGRYWPSYLA EGNCSLDPCD YRGPYSADKC TSKCGEPTQR WYHVPRSFLS
701: SDENTLVLFE EFGGNPSHVK FQTIEVGMAC GSAYENKTME LSCNGSRISA IRFANFGETE GSCGSFGKGS CSSEQDVVSL VEKQCVGKEK CLVQASESVF
801: GMTNCGNKEK KLIVEAVC

Best Arabidopsis Sequence Match ( AT1G31740.1 )
(BLAST)

001: MVSLSFILCC VLVSSCAYAT IVSHDGRAIT IDGHRRVLLS GSIHYPRSTT EMWPDLIKKG KEGSLDAIET YVFWNAHEPT RRQYDFSGNL DLIRFLKTIQ
101: NEGMYGVLRI GPYVCAEWNY GGFPVWLHNM PGMEFRTTNT AFMNEMQNFT TMIVEMVKKE KLFASQGGPI ILAQIENEYG NVIGSYGEAG KAYIQWCANM
201: ANSLDVGVPW IMCQQDDAPQ PMLNTCNGYY CDNFSPNNPN TPKMWTENWT GWYKNWGGKD PHRTTEDVAF AVARFFQKEG TFQNYYMYHG GTNFDRTAGG
301: PYITTTYDYD APLDEFGNLN QPKYGHLKQL HDVLHAMEKT LTYGNISTVD FGNLVTATVY QTEEGSSCFI GNVNETSDAK INFQGTSYDV PAWSVSILPD
401: CKTETYNTAK INTQTSVMVK KANEAENEPS TLKWSWRPEN IDSVLLKGKG ESTMRQLFDQ KVVSNDESDY LWYMTTVNLK EQDPVLGKNM SLRINSTAHV
501: LHAFVNGQHI GNYRVENGKF HYVFEQDAKF NPGANVITLL SITVGLPNYG AFFENFSAGI TGPVFIIGRN GDETIVKDLS THKWSYKTGL SGFENQLFSS
601: ESPSTWSAPL GSEPVVVDLL GLGKGTAWIN GNNIGRYWPA FLSDIDGCSA EYHVPRSFLN SEGDNTLVLF EEIGGNPSLV NFQTIGVGSV CANVYEKNVL
701: ELSCNGKPIS AIKFASFGNP GGDCGSFEKG TCEASNNAAA ILTQECVGKE KCSIDVSEDK FGAAECGALA KRLAVEAIC

Arabidopsis Description

BGAL15Beta-galactosidase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6W4]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.