CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 8

Predictors

GFP

MS/MS

Papers

plastid: 21417358

msms PMID: 21417358 doi

DR Demartini, R Jain, G Agrawal, JJ Thelen

Department of Biochemistry and Interdisciplinary Plant Group, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34975	Canola	golgi, plasma membrane, vacuole	71.82	93.78
CDY28339	Canola	vacuole	71.72	93.65
CDY70160	Canola	vacuole	49.17	92.84
CDX98327	Canola	golgi, vacuole	22.64	92.83
CDX67790	Canola	vacuole	71.14	89.82
CDY69031	Canola	cytosol, plastid, vacuole	54.13	89.69
Bra003128.1-P	Field mustard	extracellular, vacuole	61.03	88.83
CDX93659	Canola	vacuole	68.71	86.43
CDY32304	Canola	cytosol	68.03	79.37
CDY65885	Canola	vacuole	63.27	79.29
AT1G31740.1	Thale cress	vacuole	59.77	78.95
CDX67763	Canola	golgi, plasma membrane, vacuole	49.56	66.15
PGSC0003DMT400059880	Potato	cytosol	48.49	64.81
Solyc07g042220.1.1	Tomato	unclear	50.92	64.06
VIT_11s0016g00680.t01	Wine grape	vacuole	51.51	63.47
KRH19351	Soybean	extracellular, golgi, vacuole	50.05	62.27
CDX88594	Canola	golgi, vacuole	19.24	60.92
KRH02579	Soybean	extracellular, golgi, vacuole	49.66	60.55
CDX76255	Canola	extracellular	7.09	57.03
GSMUA_Achr5P11870_001	Banana	extracellular, golgi	43.34	56.82
Os06t0628500-00	Rice	extracellular, golgi, vacuole	16.23	56.8
GSMUA_Achr4P25980_001	Banana	extracellular, golgi, vacuole	33.43	55.57
GSMUA_Achr4P26030_001	Banana	cytosol, peroxisome, vacuole	28.57	55.47
HORVU2Hr1G057440.2	Barley	vacuole	28.18	55.34
GSMUA_Achr2P21790_001	Banana	golgi, vacuole	42.76	52.32
HORVU1Hr1G003210.2	Barley	golgi, vacuole	40.62	50.54
TraesCS1A01G024100.1	Wheat	vacuole	40.62	50.48
HORVU1Hr1G003200.1	Barley	golgi, vacuole	40.43	50.12
Os10t0330600-01	Rice	extracellular	40.23	50.0
Zm00001d043393_P001	Maize	extracellular	39.94	50.0
TraesCS1B01G030400.1	Wheat	vacuole	40.23	49.82
TraesCS1D01G024200.1	Wheat	vacuole	40.14	49.82
Os10t0340600-01	Rice	extracellular, golgi, vacuole	40.04	49.76
EES03081	Sorghum	extracellular	39.94	49.52
GSMUA_Achr5P11850_001	Banana	extracellular, golgi	43.05	49.33
CDY15749	Canola	golgi, vacuole	38.87	47.39
CDY36028	Canola	plastid	32.56	47.05
CDY53959	Canola	golgi, vacuole	33.33	46.99
CDY04567	Canola	golgi, vacuole	38.68	46.82
CDY47949	Canola	golgi, vacuole	33.14	46.71
CDX83288	Canola	golgi, vacuole	38.19	46.51
CDX95380	Canola	vacuole	32.85	46.49
CDY31204	Canola	golgi, vacuole	38.1	46.45
CDX97513	Canola	golgi, vacuole	37.8	46.31
CDY23637	Canola	golgi, vacuole	37.71	46.25
CDX94367	Canola	mitochondrion	31.97	46.21
CDY11899	Canola	golgi, vacuole	32.26	45.98
CDY51738	Canola	golgi, vacuole	37.32	45.77
CDY37486	Canola	golgi, vacuole	37.32	45.77
CDX92753	Canola	golgi, vacuole	31.49	45.51
CDY42755	Canola	vacuole	31.49	45.51
CDY20708	Canola	golgi, vacuole	31.58	45.01
CDY32919	Canola	golgi, vacuole	31.49	44.88
CDX76254	Canola	golgi, nucleus, vacuole	25.27	44.22
CDY43757	Canola	golgi, vacuole	31.78	44.13
CDX84446	Canola	golgi, vacuole	31.68	43.99
CDX75569	Canola	golgi, vacuole	34.89	43.41
CDX89360	Canola	mitochondrion	29.35	43.2
CDX69219	Canola	vacuole	34.5	43.08
CDY59693	Canola	vacuole	35.57	42.76
CDY39845	Canola	vacuole	29.45	42.08
CDX84445	Canola	vacuole	28.96	41.39
CDY31349	Canola	vacuole	29.06	40.35
CDY19166	Canola	golgi, vacuole	34.11	39.53
CDY23785	Canola	vacuole	34.21	39.42
CDX75479	Canola	vacuole	30.9	37.63
CDX69103	Canola	vacuole	30.71	37.44
CDY31414	Canola	cytosol, golgi, mitochondrion, peroxisome	28.38	37.44
CDX72512	Canola	vacuole	30.22	36.85
CDY40650	Canola	vacuole	30.22	36.85
CDY43756	Canola	cytosol, nucleus, peroxisome	18.17	36.67
CDY70594	Canola	cytosol	14.19	35.1
CDY69471	Canola	cytosol	14.19	35.1
CDX72747	Canola	vacuole	29.64	34.42
CDY59725	Canola	cytosol	9.91	32.69
CDY70118	Canola	cytosol	18.76	32.49
CDY59691	Canola	cytosol, nucleus, vacuole	10.88	31.82
CDY22419	Canola	cytosol	29.54	31.8
CDY02241	Canola	golgi, vacuole	30.22	31.45
CDX89744	Canola	vacuole	30.22	28.64

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	MapMan:1.1.4.1.2
Gene3D:1.10.3460.10	Gene3D:2.60.120.260	Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:A0A078IVA9
UniProt:A0A078IVA9	EnsemblPlants:CDY53917	ProteinID:CDY53917	ProteinID:CDY53917.1	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0004565	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	EnsemblPlantsGene:GSBRNA2T00011687001
InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922
InterPro:IPR008979	InterPro:IPR023329	InterPro:Lectin_gal-bd_dom	PFAM:PF00504	PFAM:PF01301	PFAM:PF02140
PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF88	MetaCyc:PWY-6807
SUPFAM:SSF103511	SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI0004EE4984	SEG:seg	:

Description

BnaA07g38250DBeta-galactosidase [Source:UniProtKB/TrEMBL;Acc:A0A078IVA9]

Coordinates

chrLK033249:-:61837..68239

Molecular Weight (calculated)

114119.0 Da

IEP (calculated)

7.380

GRAVY (calculated)

-0.327

Length

1029 amino acids

Sequence
(BLAST)

0001: MASLCASSAI AAISSPGFLG GKKLRLNKKL NVPAVSRSGT SVRAVAADPD RPIWFPGSTP PEWLDGSLPG DFGFDPLGLS SDPDSLKWNA QAELVHCRWA
0101: MLGAAGIFIP EFLTKIGILN TPSWYTAGEQ EYFTDKTTLF VVELILIGWA EGRRWADIIK PGSVNTDPIF PNNKLTGTDV GYPGGLWFDP LGWGSGSPAK
0201: IKELRTKEIK NGRLAMLAVM GAWFQHIYTG TGPIDNLFAH LADPGHATIF AAFTPNVYAT IVSHDGRAIT IDGHRRVLLS GSIHYPRSTP EMWPDLIKKG
0301: KEGGLNAIET YVFWNAHEPT RRQYDFSGKL DLIRFLKTIQ DEGLYGVLRI GPYACAEWNY GGFPVWLHNM PGMVFRTTNK AYMDEMQNFT TMIVDMVKKE
0401: KLFASQGGPI ILAQIENEYG NVMGPYGESG KSYIKWCANM AQSLDVGVPW IMCQQNDAPQ PMLNTCNGFY CDNFVPNNPN TPKMWTENWT GWFKQWGGKN
0501: PHRTTEDVAF SVARFFQRGG TFNNYYMYHG GTNFDRTAGG PYITTSYDYD APLDEYGNLN QPKYGHLKQL HDVLHSMERI LTYGNISTID FGNSASATIY
0601: KTEEGSSCFF GNGNETSDAT ISFQGESYVV PAWSVTILPD CKNEAFNTAK IITQTSMMVK KPNEAEDAPS TLKWSWRPEN MDNFLLKGKG ESTQTQLFDQ
0701: KVVTNDQSDY LWYMTTVKFK KRDPISGKIM SLRVNSTAHV LHAFVNGKHI GNQHAENGKF NYIFEKDVKF KSGRNVIALL SITVGLANYG AFFESKPAGI
0801: TGPIFITGKN GDETIVKDLS AHKWSYKTGL NGFENQLFRT ESMSKWSVEG VPFNRTMTWY KATFKAPLGN EPVVVDLMGL GKGAYHAEKC LTNCGEPTQR
0901: WYHVPRSFLN AQGDNTLVLF EEMGGNPSLV NFQTTRVGSV CANVNEKKII ELSCDRKPIS AIKFASFGNP NGNCGSFEKG TCESSKNTVD ILTQECVGKE
1001: KCSIDVSTEK FGAPDCSGAT RRLAVEAIC

Best Arabidopsis Sequence Match ( AT1G31740.1 )
(BLAST)

001: MVSLSFILCC VLVSSCAYAT IVSHDGRAIT IDGHRRVLLS GSIHYPRSTT EMWPDLIKKG KEGSLDAIET YVFWNAHEPT RRQYDFSGNL DLIRFLKTIQ
101: NEGMYGVLRI GPYVCAEWNY GGFPVWLHNM PGMEFRTTNT AFMNEMQNFT TMIVEMVKKE KLFASQGGPI ILAQIENEYG NVIGSYGEAG KAYIQWCANM
201: ANSLDVGVPW IMCQQDDAPQ PMLNTCNGYY CDNFSPNNPN TPKMWTENWT GWYKNWGGKD PHRTTEDVAF AVARFFQKEG TFQNYYMYHG GTNFDRTAGG
301: PYITTTYDYD APLDEFGNLN QPKYGHLKQL HDVLHAMEKT LTYGNISTVD FGNLVTATVY QTEEGSSCFI GNVNETSDAK INFQGTSYDV PAWSVSILPD
401: CKTETYNTAK INTQTSVMVK KANEAENEPS TLKWSWRPEN IDSVLLKGKG ESTMRQLFDQ KVVSNDESDY LWYMTTVNLK EQDPVLGKNM SLRINSTAHV
501: LHAFVNGQHI GNYRVENGKF HYVFEQDAKF NPGANVITLL SITVGLPNYG AFFENFSAGI TGPVFIIGRN GDETIVKDLS THKWSYKTGL SGFENQLFSS
601: ESPSTWSAPL GSEPVVVDLL GLGKGTAWIN GNNIGRYWPA FLSDIDGCSA EYHVPRSFLN SEGDNTLVLF EEIGGNPSLV NFQTIGVGSV CANVYEKNVL
701: ELSCNGKPIS AIKFASFGNP GGDCGSFEKG TCEASNNAAA ILTQECVGKE KCSIDVSEDK FGAAECGALA KRLAVEAIC

Arabidopsis Description

BGAL15Beta-galactosidase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6W4]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.