Factsheet for PGSC0003DMT400059880

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
vacuole 1
extracellular 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g042220.1.1	Tomato	unclear	95.19	89.61
CDX98327	Canola	golgi, vacuole	21.56	66.14
VIT_11s0016g00680.t01	Wine grape	vacuole	71.69	66.11
CDY70160	Canola	vacuole	45.45	64.22
CDY65885	Canola	vacuole	68.44	64.19
AT1G31740.1	Thale cress	vacuole	64.55	63.8
CDY69031	Canola	cytosol, plastid, vacuole	51.17	63.45
KRH19351	Soybean	extracellular, golgi, vacuole	67.92	63.24
CDY34975	Canola	golgi, plasma membrane, vacuole	64.42	62.94
CDY28339	Canola	vacuole	64.16	62.69
CDX67790	Canola	vacuole	66.23	62.58
CDX93659	Canola	vacuole	66.23	62.35
KRH02579	Soybean	extracellular, golgi, vacuole	68.05	62.09
Bra018721.1-P	Field mustard	extracellular, golgi, vacuole	58.96	62.02
Bra003128.1-P	Field mustard	extracellular, vacuole	55.32	60.25
GSMUA_Achr4P26030_001	Banana	cytosol, peroxisome, vacuole	40.78	59.25
AT5G20710.1	Thale cress	vacuole	62.86	58.6
Bra002325.1-P	Field mustard	golgi, vacuole	62.47	58.02
CDY32304	Canola	cytosol	64.55	56.35
GSMUA_Achr5P11870_001	Banana	extracellular, golgi	56.75	55.67
GSMUA_Achr4P25980_001	Banana	extracellular, golgi, vacuole	44.68	55.57
GSMUA_Achr2P21790_001	Banana	golgi, vacuole	57.92	53.03
HORVU2Hr1G057440.2	Barley	vacuole	33.77	49.62
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	42.73	49.1
Os10t0330600-01	Rice	extracellular	52.6	48.91
CDY53917	Canola	plastid	64.81	48.49
HORVU1Hr1G003210.2	Barley	golgi, vacuole	51.82	48.25
Os10t0340600-01	Rice	extracellular, golgi, vacuole	51.69	48.07
GSMUA_Achr5P11850_001	Banana	extracellular, golgi	55.97	48.0
Os06t0628500-00	Rice	extracellular, golgi, vacuole	18.31	47.96
Zm00001d043393_P001	Maize	extracellular	51.17	47.93
TraesCS1A01G024100.1	Wheat	vacuole	51.43	47.83
HORVU1Hr1G003200.1	Barley	golgi, vacuole	51.3	47.59
TraesCS1D01G024200.1	Wheat	vacuole	51.17	47.53
TraesCS1B01G030400.1	Wheat	vacuole	51.17	47.41
EES03081	Sorghum	extracellular	51.04	47.35
PGSC0003DMT400009496	Potato	nucleus, peroxisome, vacuole	32.73	46.58
PGSC0003DMT400020941	Potato	extracellular	49.87	45.07
PGSC0003DMT400079498	Potato	vacuole	42.47	44.98
PGSC0003DMT400083896	Potato	extracellular	47.79	44.07
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	48.31	44.02
CDX67763	Canola	golgi, plasma membrane, vacuole	43.77	43.71
PGSC0003DMT400012359	Potato	golgi, vacuole	47.66	43.69
PGSC0003DMT400006654	Potato	golgi, vacuole	46.62	42.84
PGSC0003DMT400023851	Potato	nucleus, peroxisome, vacuole	39.22	41.71
PGSC0003DMT400057597	Potato	golgi, vacuole	37.14	41.27
PGSC0003DMT400023852	Potato	extracellular	33.25	40.7
PGSC0003DMT400039333	Potato	extracellular, golgi	43.25	39.83
PGSC0003DMT400067956	Potato	extracellular	44.29	38.23
PGSC0003DMT400031178	Potato	vacuole	40.52	37.64
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	21.56	37.14
PGSC0003DMT400015841	Potato	endoplasmic reticulum, golgi, vacuole	38.96	37.08

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0004565	GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	GO:GO:0030246	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35
InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979	InterPro:Lectin_gal-bd_dom	UniProt:M1C4V9	PFAM:PF01301
PFAM:PF02140	EnsemblPlantsGene:PGSC0003DMG400023293	PGSC:PGSC0003DMG400023293	EnsemblPlants:PGSC0003DMT400059880	PRINTS:PR00742	ScanProsite:PS01182
PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF88	SUPFAM:SSF49785	SUPFAM:SSF51445	UniParc:UPI000295F942
SEG:seg	:	:	:	:	:

Description

Beta-galactosidase [Source:PGSC_GENE;Acc:PGSC0003DMG400023293]

Coordinates

chr7:+:39678619..39683765

Molecular Weight (calculated)

86248.4 Da

IEP (calculated)

4.845

GRAVY (calculated)

-0.395

Length

770 amino acids

Sequence
(BLAST)

001: MWPDLIKKSK EGGLDAIETY VFWNAHEPSR REYDFSGNLD LIRFLKTIQD EGLYAVLRIG PYVCAEWNYG GFPVWLHNMP GIELRTANGV YMNEMENFTK
101: LIVDMVKQEK LFASQGGPII LAQIENEFGN VQEAYGDAGK AYIQWCSNMA QSLNVGVPWI MCQQSDAPQP MINTCNGYYC DEFTPNNPNS PKMWTENWTG
201: WFKNWGGKDP LRTTEDLAYS VARFYQTGGT FQNYYMYHGG TNFGRTSGGP YITTTYDYNA PLDEFGNLAQ PKYGHLKELH DVLHSMEKIL TSGSVNNTNL
301: GNSVAVTMYS LDGESSCFFS NANETTDATI SYKNVNYNVP AWSVTILPDC ITEVYNTAKV NTQTSIMVKK LNDAENEPIS LQWSWRPEMI DDAIILGRGQ
401: SSVHELLDQK VVNDTSDYLW YMTTVYINKT DPIWSDDMKL RVNASGHVLH AYVNGQYLGS DWATYGIFNY VFEEKVKLNP GKNYISLLSA TVGLKNYGPH
501: FDTIQSGILG PVEIIGKIGD ESIIKDLSSH KWSYTVGLKG INNKLFDENP KYNTRKWDSH DVPINRMMTW YKTTFKAPLG NAPVVVDMQG LGKGTAWVNG
601: QSIGRYWPSY LAEGSCSLDP CDYRGPYSAD KCTSKCGEPT QRWYHVPRSF LSSDENTLVL FEEFGGNPSL VNFQTIEVGM ACGSAYENKT MELSCNGRPI
701: SAIRFANFGE TEGSCGSFGK GSCSSEQDVV SVVEKECIGK EKCLVQASES VFGTTNCGNN DKRLIVEAVC

Best Arabidopsis Sequence Match ( AT1G31740.1 )
(BLAST)

001: MVSLSFILCC VLVSSCAYAT IVSHDGRAIT IDGHRRVLLS GSIHYPRSTT EMWPDLIKKG KEGSLDAIET YVFWNAHEPT RRQYDFSGNL DLIRFLKTIQ
101: NEGMYGVLRI GPYVCAEWNY GGFPVWLHNM PGMEFRTTNT AFMNEMQNFT TMIVEMVKKE KLFASQGGPI ILAQIENEYG NVIGSYGEAG KAYIQWCANM
201: ANSLDVGVPW IMCQQDDAPQ PMLNTCNGYY CDNFSPNNPN TPKMWTENWT GWYKNWGGKD PHRTTEDVAF AVARFFQKEG TFQNYYMYHG GTNFDRTAGG
301: PYITTTYDYD APLDEFGNLN QPKYGHLKQL HDVLHAMEKT LTYGNISTVD FGNLVTATVY QTEEGSSCFI GNVNETSDAK INFQGTSYDV PAWSVSILPD
401: CKTETYNTAK INTQTSVMVK KANEAENEPS TLKWSWRPEN IDSVLLKGKG ESTMRQLFDQ KVVSNDESDY LWYMTTVNLK EQDPVLGKNM SLRINSTAHV
501: LHAFVNGQHI GNYRVENGKF HYVFEQDAKF NPGANVITLL SITVGLPNYG AFFENFSAGI TGPVFIIGRN GDETIVKDLS THKWSYKTGL SGFENQLFSS
601: ESPSTWSAPL GSEPVVVDLL GLGKGTAWIN GNNIGRYWPA FLSDIDGCSA EYHVPRSFLN SEGDNTLVLF EEIGGNPSLV NFQTIGVGSV CANVYEKNVL
701: ELSCNGKPIS AIKFASFGNP GGDCGSFEKG TCEASNNAAA ILTQECVGKE KCSIDVSEDK FGAAECGALA KRLAVEAIC

Arabidopsis Description

BGAL15Beta-galactosidase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6W4]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.