Factsheet for PGSC0003DMT400067956

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
golgi 5
mitochondrion 1
vacuole 5
extracellular 4
endoplasmic reticulum 3
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
iPSORT:	mitochondrion
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g092160.2.1	Tomato	extracellular	96.41	96.41
AT2G32810.1	Thale cress	golgi, vacuole	66.03	66.4
Bra021814.1-P	Field mustard	plastid	65.81	65.73
GSMUA_Achr2P21230_001	Banana	extracellular, golgi, vacuole	64.69	65.72
KRH42784	Soybean	nucleus	66.93	65.68
CDY19166	Canola	golgi, vacuole	65.36	65.65
CDY23785	Canola	vacuole	65.7	65.62
Os12t0429200-01	Rice	plasma membrane	62.89	61.04
EES16726	Sorghum	extracellular	62.78	60.67
TraesCS5D01G148400.1	Wheat	unclear	61.77	60.42
TraesCS5A01G143600.4	Wheat	plasma membrane	61.21	59.93
TraesCS5B01G142600.1	Wheat	unclear	60.99	59.71
Zm00001d041880_P001	Maize	extracellular, plasma membrane	61.44	59.7
HORVU5Hr1G045820.9	Barley	extracellular, plasma membrane, vacuole	59.64	58.4
PGSC0003DMT400020941	Potato	extracellular	49.78	52.11
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	38.9	51.79
PGSC0003DMT400006654	Potato	golgi, vacuole	48.09	51.19
PGSC0003DMT400083896	Potato	extracellular	47.87	51.14
PGSC0003DMT400009496	Potato	nucleus, peroxisome, vacuole	30.38	50.09
PGSC0003DMT400079498	Potato	vacuole	40.7	49.93
PGSC0003DMT400012359	Potato	golgi, vacuole	46.97	49.88
PGSC0003DMT400057597	Potato	golgi, vacuole	38.45	49.49
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	46.52	49.11
PGSC0003DMT400039333	Potato	extracellular, golgi	45.18	48.21
PGSC0003DMT400023851	Potato	nucleus, peroxisome, vacuole	37.33	45.99
PGSC0003DMT400023852	Potato	extracellular	31.5	44.67
PGSC0003DMT400059880	Potato	cytosol	38.23	44.29
PGSC0003DMT400015841	Potato	endoplasmic reticulum, golgi, vacuole	37.56	41.41
PGSC0003DMT400031178	Potato	vacuole	38.23	41.13
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	20.52	40.94

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	EntrezGene:102579815
Gene3D:2.60.120.260	Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0004565	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009505	GO:GO:0016020	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246
GO:GO:0030312	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF
InterPro:IPR000922	InterPro:IPR008979	InterPro:Lectin_gal-bd_dom	UniProt:M1CI69	PFAM:PF01301	PFAM:PF02140
EnsemblPlantsGene:PGSC0003DMG400026430	PGSC:PGSC0003DMG400026430	EnsemblPlants:PGSC0003DMT400067956	PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228
PANTHER:PTHR23421	PANTHER:PTHR23421:SF74	SUPFAM:SSF49785	SUPFAM:SSF51445	TMHMM:TMhelix	UniParc:UPI000294E767
RefSeq:XP_006360940.1	:	:	:	:	:

Description

Beta-galactosidase [Source:PGSC_GENE;Acc:PGSC0003DMG400026430]

Coordinates

chr9:-:59288769..59303674

Molecular Weight (calculated)

99604.0 Da

IEP (calculated)

6.899

GRAVY (calculated)

-0.294

Length

892 amino acids

Sequence
(BLAST)

001: MAVAMSRRKT LSFPLILTAL TIHFAIVAGE YFKPFNVTYD NRALIIGGKR RMLISAGIHY PRATPEMWPK LIARSKEGGA DVIETYTFWN GHEPTRGQYN
101: FKGRYDIVKF AKLVGSHGLF LFIRIGPYAC AEWNFGGFPI WLRDIPGIEF RTDNAPFKEE MERYVKKIVD LMISESLFSW QGGPIILLQI ENEYGNIESS
201: FGPKGKIYMK WAAEMAVGLG AGVPWVMCRQ TDAPEYIIDT CNAYYCDGFT PNSDKKPKIW TENWDGWFAD WGERLPYRPS EDIAFAIARF FQRGGSLQNY
301: YMYFGGTNFG RTAGGPTQIT SYDYDAPLDE YGLLRQPKWG HLKDLHAAIK LCEPALVAAD SPQYIKLGPN QEAHVYRGTS HNIGQYISLN EGICAAFIAN
401: IDEHESATVK FYDQEYTLPP WSVSILPDCR NTAFNTAKVG AQTSIKTVGS DSVSVGKNSL FPQVITKSKL ESISQSWMTL KEPLGVWGDK NFTSKGILEH
501: LNVTKDQSDY LWYLTRIYIS DDDISFWEEN DVSPTIDIDS MRDFVRIFVN GQLAGSVKGK WIKVVQPVKL VQGYNDILLL SETVGLQNYG AFLEKDGGGF
601: KGQIKLTGCK SGDINLTTSL WTYQVGLKGE FLKVYDVNST ESTGWTEFPS GATPSVFSWY KTKFDAPGGT DPVALDFSSM GKGQAWVNGH HIGRYWTLVA
701: PNNGCGRTCD YRGAYDSDKC RTNCGEITQA WYHIPRSWLK TSNNVLVIFE ETDRTPFDIS ISMRSTETIC AQVSEKHYPP LHKWSLSESD RKLSLMDKTP
801: EMHLQCDEGH TISSIEFASY GSPNGSCQKF SQGKCHAANS LSVVSQACIG RTSCSIGISN GVFGDPCRHV VKSLAVQAKC SPPPDLSTSA SS

Best Arabidopsis Sequence Match ( AT2G32810.1 )
(BLAST)

001: MAESIRTFSL QWRILSLIIA LLVYFPILSG SYFKPFNVSY DHRALIIAGK RRMLVSAGIH YPRATPEMWS DLIAKSKEGG ADVVQTYVFW NGHEPVKGQY
101: NFEGRYDLVK FVKLIGSSGL YLHLRIGPYV CAEWNFGGFP VWLRDIPGIE FRTDNEPFKK EMQKFVTKIV DLMREAKLFC WQGGPIIMLQ IENEYGDVEK
201: SYGQKGKDYV KWAASMALGL GAGVPWVMCK QTDAPENIID ACNGYYCDGF KPNSRTKPVL WTEDWDGWYT KWGGSLPHRP AEDLAFAVAR FYQRGGSFQN
301: YYMYFGGTNF GRTSGGPFYI TSYDYDAPLD EYGLRSEPKW GHLKDLHAAI KLCEPALVAA DAPQYRKLGS KQEAHIYHGD GETGGKVCAA FLANIDEHKS
401: AHVKFNGQSY TLPPWSVSIL PDCRHVAFNT AKVGAQTSVK TVESARPSLG SMSILQKVVR QDNVSYISKS WMALKEPIGI WGENNFTFQG LLEHLNVTKD
501: RSDYLWHKTR ISVSEDDISF WKKNGPNSTV SIDSMRDVLR VFVNKQLAGS IVGHWVKAVQ PVRFIQGNND LLLLTQTVGL QNYGAFLEKD GAGFRGKAKL
601: TGFKNGDLDL SKSSWTYQVG LKGEADKIYT VEHNEKAEWS TLETDASPSI FMWYKTYFDP PAGTDPVVLN LESMGRGQAW VNGQHIGRYW NIISQKDGCD
701: RTCDYRGAYN SDKCTTNCGK PTQTRYHVPR SWLKPSSNLL VLFEETGGNP FKISVKTVTA GILCGQVSES HYPPLRKWST PDYINGTMSI NSVAPEVHLH
801: CEDGHVISSI EFASYGTPRG SCDGFSIGKC HASNSLSIVS EACKGRNSCF IEVSNTAFIS DPCSGTLKTL AVMSRCSPSQ NMSDLSF

Arabidopsis Description

BGAL9Beta-galactosidase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV3]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.