CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G32810.1	Thale cress	golgi, vacuole	65.68	67.31
PGSC0003DMT400067956	Potato	extracellular	65.68	66.93
Solyc09g092160.2.1	Tomato	extracellular	65.35	66.59
Bra021814.1-P	Field mustard	plastid	64.25	65.4
CDY19166	Canola	golgi, vacuole	63.59	65.09
CDY23785	Canola	vacuole	63.92	65.06
GSMUA_Achr2P21230_001	Banana	extracellular, golgi, vacuole	62.27	64.46
Os12t0429200-01	Rice	plasma membrane	59.85	59.19
TraesCS5A01G143600.4	Wheat	plasma membrane	59.3	59.17
TraesCS5D01G148400.1	Wheat	unclear	59.08	58.88
TraesCS5B01G142600.1	Wheat	unclear	58.97	58.84
EES16726	Sorghum	extracellular	59.74	58.83
Zm00001d041880_P001	Maize	extracellular, plasma membrane	59.3	58.71
HORVU5Hr1G045820.9	Barley	extracellular, plasma membrane, vacuole	58.2	58.07
KRG89008	Soybean	nucleus	50.38	54.78
KRH29942	Soybean	extracellular, golgi, vacuole	50.27	54.53
KRH22910	Soybean	nucleus	50.16	54.29
KRH26431	Soybean	golgi, vacuole	49.62	53.69
KRH12385	Soybean	vacuole	41.69	52.57
KRH37385	Soybean	nucleus	41.69	52.57
KRH10007	Soybean	nucleus	48.07	52.02
KRH23324	Soybean	vacuole	47.63	51.49
KRH47126	Soybean	nucleus	47.3	50.89
KRH69834	Soybean	extracellular, golgi	47.41	50.83
KRH08131	Soybean	nucleus	47.3	50.71
KRH44153	Soybean	nucleus	46.97	50.65
KRH05876	Soybean	nucleus	40.48	50.27
KRH76716	Soybean	nucleus	46.75	50.06
KRH15132	Soybean	mitochondrion, nucleus	40.26	50.0
KRH61101	Soybean	nucleus	40.48	50.0
KRH19154	Soybean	golgi, mitochondrion, plastid, vacuole	45.87	49.7
KRH02714	Soybean	golgi, vacuole	45.76	49.58
KRH28740	Soybean	nucleus	46.2	49.24
KRH63980	Soybean	vacuole	45.21	48.75
KRH53957	Soybean	nucleus	45.1	48.52
KRH70131	Soybean	vacuole	42.9	46.71
KRH51779	Soybean	vacuole	36.63	46.7
KRH19351	Soybean	extracellular, golgi, vacuole	42.46	46.67
KRH40964	Soybean	golgi, vacuole	36.08	46.59
KRH02579	Soybean	extracellular, golgi, vacuole	43.23	46.56
KRH38264	Soybean	endoplasmic reticulum, golgi, vacuole	42.24	46.15
KRH07365	Soybean	extracellular, golgi, vacuole	41.91	46.13
KRH63978	Soybean	golgi, vacuole	36.08	45.75
KRH64633	Soybean	vacuole	34.98	45.69
KRH53267	Soybean	golgi, vacuole	34.76	45.34
KRH53958	Soybean	golgi, vacuole	35.75	45.33
KRH48708	Soybean	vacuole	41.58	44.68
KRH48710	Soybean	vacuole	41.47	44.56
KRH06832	Soybean	mitochondrion	34.76	42.13
KRH38266	Soybean	cytosol, peroxisome	26.95	41.88
KRH24309	Soybean	golgi, vacuole	37.29	40.21
KRH60700	Soybean	extracellular, golgi, vacuole	36.85	39.69
KRH29286	Soybean	extracellular, golgi, vacuole	36.63	39.55

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	ProteinID:AAQ62586.1	EMBL:ACUP02004832	EnsemblPlantsGene:GLYMA_08G111000
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0004565	GO:GO:0005488	GO:GO:0005575
GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009505	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	GO:GO:0030312	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat
InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979	EnsemblPlants:KRH42784
ProteinID:KRH42784	ProteinID:KRH42784.1	ProteinID:KRH42785.1	InterPro:Lectin_gal-bd_dom	PFAM:PF01301	PFAM:PF02140
PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF74	MetaCyc:PWY-6807
UniProt:Q6X0N7	SUPFAM:SSF49785	SUPFAM:SSF51445	TMHMM:TMhelix	UniParc:UPI000035187D	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:8524913..8542967

Molecular Weight (calculated)

102493.0 Da

IEP (calculated)

6.543

GRAVY (calculated)

-0.282

Length

909 amino acids

Sequence
(BLAST)

001: MLRNSNSRGG FGSGMVVAVV CVCVCVVAME YGVRVTEGEE YFKPFNVSYD HRALILNGKR RFLISAGIHY PRATPEMWPD LIAKSKEGGA DVIETYVFWN
101: GHEPVRGQYN FEGRYDLVKF VRLAASHGLY FFLRIGPYAC AEWNFGGFPV WLRDIPGIEF RTNNAPFKEE MKRFVSKVVN LMREERLFSW QGGPIILLQI
201: ENEYGNIENS YGKGGKEYMK WAAKMALSLG AGVPWVMCRQ QDAPYDIIDT CNAYYCDGFK PNSHNKPTMW TENWDGWYTQ WGERLPHRPV EDLAFAVARF
301: FQRGGSFQNY YMYFGGTNFG RTAGGPLQIT SYDYDAPIDE YGLLREPKWG HLKDLHAALK LCEPALVATD SPTYIKLGPK QEAHVYQANV HLEGLNLSMF
401: ESSSICSAFL ANIDEWKEAT VTFRGQRYTI PPWSVSVLPD CRNTVFNTAK VRAQTSVKLV ESYLPTVSNI FPAQQLRHQN DFYYISKSWM TTKEPLNIWS
501: KSSFTVEGIW EHLNVTKDQS DYLWYSTRVY VSDSDILFWE ENDVHPKLTI DGVRDILRVF INGQLIGNVV GHWIKVVQTL QFLPGYNDLT LLTQTVGLQN
601: YGAFLEKDGA GIRGKIKITG FENGDIDLSK SLWTYQVGLQ GEFLKFYSEE NENSEWVELT PDAIPSTFTW YKTYFDVPGG IDPVALDFKS MGKGQAWVNG
701: QHIGRYWTRV SPKSGCQQVC DYRGAYNSDK CSTNCGKPTQ TLYHVPRSWL KATNNLLVIL EETGGNPFEI SVKLHSSRII CAQVSESNYP PLQKLVNADL
801: IGEEVSANNM IPELHLHCQQ GHTISSVAFA SFGTPGGSCQ NFSRGNCHAP SSMSIVSEAC QGKRSCSIKI SDSAFGVDPC PGVVKTLSVE ARCTSPLSDD
901: FFQEAVSSF

Best Arabidopsis Sequence Match ( AT2G32810.1 )
(BLAST)

001: MAESIRTFSL QWRILSLIIA LLVYFPILSG SYFKPFNVSY DHRALIIAGK RRMLVSAGIH YPRATPEMWS DLIAKSKEGG ADVVQTYVFW NGHEPVKGQY
101: NFEGRYDLVK FVKLIGSSGL YLHLRIGPYV CAEWNFGGFP VWLRDIPGIE FRTDNEPFKK EMQKFVTKIV DLMREAKLFC WQGGPIIMLQ IENEYGDVEK
201: SYGQKGKDYV KWAASMALGL GAGVPWVMCK QTDAPENIID ACNGYYCDGF KPNSRTKPVL WTEDWDGWYT KWGGSLPHRP AEDLAFAVAR FYQRGGSFQN
301: YYMYFGGTNF GRTSGGPFYI TSYDYDAPLD EYGLRSEPKW GHLKDLHAAI KLCEPALVAA DAPQYRKLGS KQEAHIYHGD GETGGKVCAA FLANIDEHKS
401: AHVKFNGQSY TLPPWSVSIL PDCRHVAFNT AKVGAQTSVK TVESARPSLG SMSILQKVVR QDNVSYISKS WMALKEPIGI WGENNFTFQG LLEHLNVTKD
501: RSDYLWHKTR ISVSEDDISF WKKNGPNSTV SIDSMRDVLR VFVNKQLAGS IVGHWVKAVQ PVRFIQGNND LLLLTQTVGL QNYGAFLEKD GAGFRGKAKL
601: TGFKNGDLDL SKSSWTYQVG LKGEADKIYT VEHNEKAEWS TLETDASPSI FMWYKTYFDP PAGTDPVVLN LESMGRGQAW VNGQHIGRYW NIISQKDGCD
701: RTCDYRGAYN SDKCTTNCGK PTQTRYHVPR SWLKPSSNLL VLFEETGGNP FKISVKTVTA GILCGQVSES HYPPLRKWST PDYINGTMSI NSVAPEVHLH
801: CEDGHVISSI EFASYGTPRG SCDGFSIGKC HASNSLSIVS EACKGRNSCF IEVSNTAFIS DPCSGTLKTL AVMSRCSPSQ NMSDLSF

Arabidopsis Description

BGAL9Beta-galactosidase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV3]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.