CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63980	Soybean	vacuole	95.86	96.09
VIT_07s0031g02480.t01	Wine grape	extracellular	74.32	74.14
CDY43757	Canola	golgi, vacuole	61.42	70.04
AT5G63810.1	Thale cress	golgi, vacuole	61.42	70.04
Bra024238.1-P	Field mustard	golgi, vacuole	61.3	69.91
CDX84446	Canola	golgi, vacuole	61.07	69.64
Solyc03g019890.2.1	Tomato	nucleus	70.3	68.28
PGSC0003DMT400039333	Potato	extracellular, golgi	67.1	67.82
TraesCS3D01G379300.2	Wheat	vacuole	64.97	65.05
TraesCS3A01G386300.1	Wheat	golgi, vacuole	64.73	65.04
EES01845	Sorghum	endoplasmic reticulum, golgi, vacuole	64.85	65.01
TraesCS3B01G418400.2	Wheat	vacuole	64.73	64.81
HORVU3Hr1G081960.9	Barley	vacuole	64.5	64.42
GSMUA_Achr6P18730_001	Banana	golgi, vacuole	57.87	64.34
TraesCS3D01G379200.1	Wheat	vacuole	63.67	63.74
TraesCS3A01G386200.1	Wheat	vacuole	63.43	63.51
HORVU3Hr1G081970.1	Barley	vacuole	61.07	63.0
TraesCS3B01G418300.2	Wheat	vacuole	62.37	61.42
Zm00001d042654_P005	Maize	endoplasmic reticulum, golgi, vacuole	61.78	60.28
Os01t0875500-01	Rice	endoplasmic reticulum, mitochondrion, nucleus, vacuole	63.43	58.32
KRH22910	Soybean	nucleus	52.78	53.1
KRH61101	Soybean	nucleus	46.04	52.85
KRH12385	Soybean	vacuole	44.97	52.7
KRH37385	Soybean	nucleus	44.85	52.57
KRH15132	Soybean	mitochondrion, nucleus	45.33	52.32
KRH10007	Soybean	nucleus	51.95	52.26
KRH05876	Soybean	nucleus	45.21	52.19
KRH26431	Soybean	golgi, vacuole	51.83	52.14
KRH23324	Soybean	vacuole	51.72	51.96
KRH44153	Soybean	nucleus	51.83	51.96
KRH29942	Soybean	extracellular, golgi, vacuole	51.24	51.67
KRH47126	Soybean	nucleus	51.36	51.36
KRG89008	Soybean	nucleus	50.77	51.32
KRH69834	Soybean	extracellular, golgi	51.36	51.18
KRH76716	Soybean	nucleus	51.24	51.0
KRH28740	Soybean	nucleus	51.48	51.0
KRH08131	Soybean	nucleus	51.12	50.94
KRH51779	Soybean	vacuole	42.25	50.07
KRH19154	Soybean	golgi, mitochondrion, plastid, vacuole	49.7	50.06
KRH02714	Soybean	golgi, vacuole	49.59	49.94
KRH19351	Soybean	extracellular, golgi, vacuole	46.63	47.64
KRH02579	Soybean	extracellular, golgi, vacuole	47.46	47.51
KRH53267	Soybean	golgi, vacuole	39.05	47.35
KRH40964	Soybean	golgi, vacuole	39.41	47.3
KRH64633	Soybean	vacuole	38.93	47.27
KRH38264	Soybean	endoplasmic reticulum, golgi, vacuole	46.15	46.88
KRH07365	Soybean	extracellular, golgi, vacuole	45.68	46.73
KRH53958	Soybean	golgi, vacuole	39.17	46.16
KRH70131	Soybean	vacuole	45.21	45.75
KRH63978	Soybean	golgi, vacuole	38.82	45.75
KRH42784	Soybean	nucleus	48.52	45.1
KRH48708	Soybean	vacuole	44.38	44.33
KRH48710	Soybean	vacuole	43.91	43.85
KRH38266	Soybean	cytosol, peroxisome	28.99	41.88
KRH29286	Soybean	extracellular, golgi, vacuole	41.66	41.81
KRH06832	Soybean	mitochondrion	37.04	41.73
KRH24309	Soybean	golgi, vacuole	41.42	41.52
KRH60700	Soybean	extracellular, golgi, vacuole	41.42	41.47

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	EntrezGene:100818098
Gene3D:2.60.120.260	Gene3D:2.60.120.740	MapMan:21.2.1.2.4	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	UniProt:A0A0R0JPA1
EMBL:ACUP02003491	EnsemblPlantsGene:GLYMA_06G157200	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0004565
GO:GO:0005488	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
GO:GO:0030246	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF
InterPro:IPR000922	InterPro:IPR008979	EnsemblPlants:KRH53957	ProteinID:KRH53957	ProteinID:KRH53957.1	InterPro:Lectin_gal-bd_dom
PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228	PANTHER:PTHR23421
PANTHER:PTHR23421:SF67	MetaCyc:PWY-6807	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI0001B63D18
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:12906442..12916504

Molecular Weight (calculated)

94062.9 Da

IEP (calculated)

7.570

GRAVY (calculated)

-0.265

Length

845 amino acids

Sequence
(BLAST)

001: MKLCLCLLSL LLLVTFTVAS SANVSYDGRS LIIDAQRKLL ISASIHYPRS VPAMWPGLVQ TAKEGGVDVI ETYVFWNGHE LSPGNYYFGG RFDLVKFAQT
101: VQQAGMYLIL RIGPFVAAEW NFGGVPVWLH YVPGTVFRTY NQPFMYHMQK FTTYIVNLMK QEKLFASQGG PIILAQIENE YGYYENFYKE DGKKYALWAA
201: KMAVSQNTGV PWIMCQQWDA PDPVIDTCNS FYCDQFTPTS PNRPKIWTEN WPGWFKTFGG RDPHRPAEDV AFSVARFFQK GGSVHNYYMY HGGTNFGRTA
301: GGPFITTSYD YDAPVDEYGL PRLPKWGHLK ELHRAIKLCE HVLLNGKSVN ISLGPSVEAD VYTDSSGACA AFISNVDDKN DKTVEFRNAS FHLPAWSVSI
401: LPDCKNVVFN TAKVTSQTSV VAMVPESLQQ SDKVVNSFKW DIVKEKPGIW GKADFVKNGF VDLINTTKDT TDYLWHTTSI FVSENEEFLK KGNKPVLLIE
501: STGHALHAFV NQEYEGTGSG NGTHAPFTFK NPISLRAGKN EIALLCLTVG LQTAGPFYDF VGAGLTSVKI KGLNNGTIDL SSYAWTYKIG VQGEYLRLYQ
601: GNGLNNVNWT STSEPPKMQP LTWYKAIVDA PPGDEPVGLD MLHMGKGLAW LNGEEIGRYW PRKSEFKSED CVKECDYRGK FNPDKCDTGC GEPTQRWYHV
701: PRSWFKPSGN ILVLFEEKGG DPEKIKFVRR KVSGACALVA EDYPSVALVS QGEDKIQSNK NIPFARLACP GNTRISAVKF ASFGSPSGTC GSYLKGDCHD
801: PNSSTIVEKA CLNKNDCVIK LTEENFKSNL CPGLSRKLAV EAVCS

Best Arabidopsis Sequence Match ( AT5G63810.1 )
(BLAST)

001: MNRVTTESIA STAILVVMVF LFSWRSIEAA NVSYDHRSLT IGNRRQLIIS AAIHYPRSVP AMWPSLVQTA KEGGCNAIES YVFWNGHEPS PGKYYFGGRY
101: NIVKFIKIVQ QAGMHMILRI GPFVAAEWNY GGVPVWLHYV PGTVFRADNE PWKHYMESFT TYIVNLLKQE KLFAPQGGPI ILSQVENEYG YYEKDYGEGG
201: KRYAQWSASM AVSQNIGVPW MMCQQWDAPP TVISTCNGFY CDQFTPNTPD KPKIWTENWP GWFKTFGGRD PHRPAEDVAY SVARFFGKGG SVHNYYMYHG
301: GTNFGRTSGG PFITTSYDYE APIDEYGLPR LPKWGHLKDL HKAIMLSENL LISGEHQNFT LGHSLEADVY TDSSGTCAAF LSNLDDKNDK AVMFRNTSYH
401: LPAWSVSILP DCKTEVFNTA KVTSKSSKVE MLPEDLKSSS GLKWEVFSEK PGIWGAADFV KNELVDHINT TKDTTDYLWY TTSITVSENE AFLKKGSSPV
501: LFIESKGHTL HVFINKEYLG TATGNGTHVP FKLKKPVALK AGENNIDLLS MTVGLANAGS FYEWVGAGLT SVSIKGFNKG TLNLTNSKWS YKLGVEGEHL
601: ELFKPGNSGA VKWTVTTKPP KKQPLTWYKV VIEPPSGSEP VGLDMISMGK GMAWLNGEEI GRYWPRIARK NSPNDECVKE CDYRGKFMPD KCLTGCGEPS
701: QRWYHVPRSW FKSSGNELVI FEEKGGNPMK IKLSKRKVSV V

Arabidopsis Description

BGAL10Beta-galactosidase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN08]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.