Factsheet for Solyc01g110000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
golgi 6
extracellular 5
endoplasmic reticulum 4
vacuole 6
plasma membrane 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079498	Potato	vacuole	97.94	97.94
Solyc04g080840.1.1	Tomato	extracellular, golgi	68.09	67.35
VIT_03s0038g00150.t01	Wine grape	vacuole	77.44	65.24
Solyc12g008840.1.1	Tomato	extracellular	63.55	63.81
Solyc02g084720.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	71.66	61.66
GSMUA_Achr9P21610_001	Banana	extracellular, golgi	71.66	61.08
EER92805	Sorghum	vacuole	70.15	60.57
GSMUA_Achr4P13580_001	Banana	golgi, vacuole	72.21	60.48
Os03t0165400-01	Rice	vacuole	69.19	59.81
GSMUA_Achr4P06620_001	Banana	cytosol	52.82	59.63
Zm00001d048440_P003	Maize	vacuole	70.43	58.92
TraesCS4A01G022500.2	Wheat	golgi, vacuole	68.36	58.89
TraesCS4B01G280900.1	Wheat	golgi, vacuole	68.36	58.82
HORVU4Hr1G074280.4	Barley	vacuole	68.36	58.68
TraesCS4D01G279400.4	Wheat	vacuole	68.23	58.49
Solyc12g044880.1.1	Tomato	golgi, vacuole	66.99	58.32
Solyc03g121540.2.1	Tomato	nucleus	66.58	57.76
Solyc06g062580.2.1	Tomato	nucleus	66.58	57.55
Zm00001d027803_P002	Maize	golgi, plasma membrane, vacuole	70.7	55.99
Solyc11g018500.1.1	Tomato	cytosol, golgi, vacuole	49.24	51.51
Solyc11g069270.1.1	Tomato	extracellular	54.33	46.36
Solyc03g019890.2.1	Tomato	nucleus	54.61	45.63
Solyc02g078950.2.1	Tomato	vacuole	52.41	45.14
Solyc11g018490.1.1	Tomato	cytosol	45.94	44.24
Solyc07g042220.1.1	Tomato	unclear	47.18	41.93
Solyc09g092160.2.1	Tomato	extracellular	50.34	41.03
Solyc01g111540.2.1	Tomato	unclear	44.15	38.63
Solyc10g055470.1.1	Tomato	vacuole	43.74	38.36

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0004565
GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312
InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979
UniProt:K4B3L3	PFAM:PF01301	PRINTS:PR00742	ScanProsite:PS01182	PANTHER:PTHR23421	PANTHER:PTHR23421:SF71
SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-TM	EnsemblPlantsGene:Solyc01g110000.2	EnsemblPlants:Solyc01g110000.2.1	TMHMM:TMhelix
UniParc:UPI0002768D96	:	:	:	:	:

Description

Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:K4B3L3]

Coordinates

chr1:+:96826490..96832587

Molecular Weight (calculated)

81372.0 Da

IEP (calculated)

8.606

GRAVY (calculated)

-0.251

Length

727 amino acids

Sequence
(BLAST)

001: MGINTKWFLI FFVLIFGSKI CYCSVSYDKK SLIINGQRKI LFSGSVHYPR STPDMWEGII QKAKDGGLDV IETYVFWNLH EPSPGNYNFE GRNDLVRFIK
101: LIQKAGLYMH LRIGPYICGE WNFGGFPVWL KYVPGISFRT NNEPFKREMQ RFTTKIVQMM KNEKLFQTQG GPIILSQIEN EYGLEIKQYG APGHAYMTWA
201: AKMAVEMGTG VPWVMCKEDD APDPVINTCN GFYCDYFSPN KPNKPTIWTE AWSGWFDDFG GPVHHRPVED LAFAVARFIQ KGGSLVNYYM YHGGTNFGRT
301: AGGPFITTSY DYDAPIDEYG LIRQPKYDHL KELHKAVKLC EPALISADPT VTVLGNYEQA HVFSSGSGHC AAFLANYHLS STARVTFRHQ HYDLPPWSIS
401: ILPDCKNVVY NTARVGVKTS TAQMLPTNVQ LRTWETFSED VSTIDADSKF TVVGLLEQLN VTRDMSDYLW YTTSVEINSA ESFLHRGQHP TLAVQSAGHA
501: LHVYVNGRLS GSVYGNRENR RVTFTGGVNL HAGINRISLL SVAVGLPNNG ARYETWSAGV LGPVVLHGLD KGQRDLSWQK WSYQVGLRGE AMNLASNAIS
601: AAEWVGGSLI ARQRQPLTWY KVYFNAPGGS DPLALDMGSM GKGQVWINGQ SIGRYWTAYA TGNCSPCTYA ATYRQGKCQS GCGQPTQRWY HVPRSWLKPT
701: GNLLVVFEEI GGDASKISLV KRSITHV

Best Arabidopsis Sequence Match ( AT4G36360.1 )
(BLAST)

001: MREMGTGDSA SRLILWFCLG FLILGVGFVQ CGVTYDRKAL LINGQRRILF SGSIHYPRST PDMWEDLIQK AKDGGIDVIE TYVFWNLHEP SPGKYDFEGR
101: NDLVRFVKTI HKAGLYAHLR IGPYVCAEWN FGGFPVWLKY VPGISFRTDN EPFKRAMKGF TERIVELMKS ENLFESQGGP IILSQIENEY GRQGQLLGAE
201: GHNYMTWAAK MAIATETGVP WVMCKEDDAP DPVINTCNGF YCDSFAPNKP YKPLIWTEAW SGWFTEFGGP MHHRPVQDLA FGVARFIQKG GSFVNYYMYH
301: GGTNFGRTAG GPFVTTSYDY DAPIDEYGLI RQPKYGHLKE LHRAIKMCEK ALVSADPVVT SIGNKQQAHV YSAESGDCSA FLANYDTESA ARVLFNNVHY
401: NLPPWSISIL PDCRNAVFNT AKVGVQTSQM EMLPTDTKNF QWESYLEDLS SLDDSSTFTT HGLLEQINVT RDTSDYLWYM TSVDIGDSES FLHGGELPTL
501: IIQSTGHAVH IFVNGQLSGS AFGTRQNRRF TYQGKINLHS GTNRIALLSV AVGLPNVGGH FESWNTGILG PVALHGLSQG KMDLSWQKWT YQVGLKGEAM
601: NLAFPTNTPS IGWMDASLTV QKPQPLTWHK TYFDAPEGNE PLALDMEGMG KGQIWVNGES IGRYWTAFAT GDCSHCSYTG TYKPNKCQTG CGQPTQRWYH
701: VPRAWLKPSQ NLLVIFEELG GNPSTVSLVK RSVSGVCAEV SEYHPNIKNW QIESYGKGQT FHRPKVHLKC SPGQAIASIK FASFGTPLGT CGSYQQGECH
801: AATSYAILER KCVGKARCAV TISNSNFGKD PCPNVLKRLT VEAVCAPETS VSTWRP

Arabidopsis Description

BGAL3Beta-galactosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV9]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.