Factsheet for Solyc01g111540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015841	Potato	endoplasmic reticulum, golgi, vacuole	94.34	96.91
Solyc10g055470.1.1	Tomato	vacuole	78.94	79.13
VIT_03s0038g02360.t01	Wine grape	extracellular, golgi	63.66	63.51
KRH29286	Soybean	extracellular, golgi, vacuole	59.09	58.31
GSMUA_Achr1P14790_001	Banana	vacuole	56.92	57.33
KRH24309	Soybean	golgi, vacuole	58.12	57.3
GSMUA_Achr1P26480_001	Banana	vacuole	55.23	56.46
KRH60700	Soybean	extracellular, golgi, vacuole	57.28	56.4
GSMUA_AchrUn_...	Banana	extracellular, vacuole	55.35	56.37
GSMUA_Achr4P05130_001	Banana	golgi, plastid, vacuole	56.2	55.66
AT2G16730.1	Thale cress	extracellular, golgi, vacuole	56.32	55.19
CDY31414	Canola	cytosol, golgi, mitochondrion, peroxisome	50.78	54.1
Bra013052.1-P	Field mustard	golgi, vacuole	54.63	53.66
CDX69103	Canola	vacuole	54.39	53.55
CDX75479	Canola	vacuole	54.39	53.49
Bra001991.1-P	Field mustard	golgi, vacuole	52.23	53.45
CDY40650	Canola	vacuole	54.27	53.44
Bra011577.1-P	Field mustard	vacuole	54.27	53.37
CDX72512	Canola	vacuole	54.15	53.32
Bra017687.1-P	Field mustard	vacuole	54.15	53.32
AT4G35010.1	Thale cress	vacuole	54.15	53.25
CDY70118	Canola	cytosol	37.55	52.53
TraesCS7D01G272600.1	Wheat	golgi, vacuole	52.95	52.38
KXG25431	Sorghum	golgi	53.31	52.24
CDX72747	Canola	vacuole	55.6	52.14
HORVU7Hr1G057460.1	Barley	golgi	52.11	52.04
Zm00001d053225_P005	Maize	golgi, vacuole	52.59	51.65
Os08t0549200-01	Rice	plasma membrane	52.59	51.53
Zm00001d032022_P003	Maize	golgi, vacuole	52.47	51.29
Os09t0539200-01	Rice	vacuole	27.32	50.9
TraesCS7A01G272400.2	Wheat	vacuole	51.99	50.64
TraesCS7B01G169700.1	Wheat	vacuole	52.83	50.4
TraesCS5A01G330900.1	Wheat	endoplasmic reticulum, vacuole	49.46	48.99
Solyc11g018500.1.1	Tomato	cytosol, golgi, vacuole	40.91	48.92
TraesCS5B01G331300.1	Wheat	golgi, vacuole	49.22	48.75
KXG36088	Sorghum	endoplasmic reticulum, golgi, vacuole	48.86	48.51
CDY22419	Canola	cytosol	55.6	48.33
Bra033571.1-P	Field mustard	cytosol	55.6	48.33
TraesCS5D01G336700.2	Wheat	vacuole	47.53	47.08
HORVU7Hr1G009630.2	Barley	cytosol	38.99	47.02
Solyc11g018490.1.1	Tomato	cytosol	42.6	46.89
CDY02241	Canola	golgi, vacuole	54.63	45.91
Solyc12g008840.1.1	Tomato	extracellular	39.23	45.03
Solyc01g110000.2.1	Tomato	nucleus	38.63	44.15
Zm00001d006243_P005	Maize	endoplasmic reticulum, golgi, vacuole	46.09	43.97
Solyc12g044880.1.1	Tomato	golgi, vacuole	43.92	43.71
Solyc02g078950.2.1	Tomato	vacuole	44.04	43.36
Solyc03g121540.2.1	Tomato	nucleus	43.08	42.72
AT4G38590.2	Thale cress	golgi, vacuole	53.91	42.59
Solyc06g062580.2.1	Tomato	nucleus	42.96	42.45
Zm00001d022621_P005	Maize	vacuole	45.25	42.06
Solyc04g080840.1.1	Tomato	extracellular, golgi	37.06	41.9
Solyc02g084720.2.1	Tomato	endoplasmic reticulum, golgi, vacuole	42.48	41.78
CDX89744	Canola	vacuole	54.39	41.62
Solyc03g019890.2.1	Tomato	nucleus	42.96	41.03
Solyc11g069270.1.1	Tomato	extracellular	41.64	40.61
Solyc07g042220.1.1	Tomato	unclear	38.99	39.61
Solyc09g092160.2.1	Tomato	extracellular	42.12	39.24

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	InterPro:BetaGal_jelly_roll_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0004565	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	GO:GO:0030312	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat
InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979	UniProt:K4B416
InterPro:Lectin_gal-bd_dom	PFAM:PF01301	PFAM:PF02140	PFAM:PF13364	PRINTS:PR00742	ScanProsite:PS01182
PFscan:PS50228	PANTHER:PTHR23421	PANTHER:PTHR23421:SF52	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc01g111540.2	EnsemblPlants:Solyc01g111540.2.1	UniParc:UPI0002767709	SEG:seg	:	:

Description

Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:K4B416]

Coordinates

chr1:+:97773639..97778852

Molecular Weight (calculated)

93748.9 Da

IEP (calculated)

7.829

GRAVY (calculated)

-0.364

Length

831 amino acids

Sequence
(BLAST)

001: MFQILTLALL ISLLVTSVNG QEKPRGVAYD GRSLIVNGNR ELFFSGSIHY TRSPPEMWPE IIRKAKEGGI NVIQTYVFWN IHEPVQGQFN FEGNFDIVKF
101: IKEIAEQGLY VTLRIGPYIE AEWSSGGFPY WLREIKNITF RSYNEPFVYH MKKYSEMVID LMKKEKLFAP QGGPIILAQI ENEYNNVQAA YKDNGKKYIE
201: WAANMAVGLY DGVPWIMCKQ KEAPPSVINT CNGRHCADTF AGPNGLNKPT LWTENWTAQY RTFGDPPSQR SAEDLAFSVA RFFAKNGTLT NYYMYHGGTN
301: FGRSSSSFVT TRYYDEAPLD EFGLMRDPKW SHLRDLHRAL RLSRRALLWG NPTVQKINQD LEITVYENTG EHMCAAFLTN NHTTQPSNIT FRGANYYLPE
401: KSVSILADCK TVVYNTQTVV SQHNSRNFVP SEKAKNLKWE MYQEKVPTVN ELALKNREPL ELYSLTKDKS DYAWYSTSIN VNRHDLPMRS DILTVLQVAS
501: MGHALAAFVN GQYIGFGHGN NIDKSFVFRQ PIVLKRGVND ITLLGELVGY PNSGAYMEKR FAGPRAVTIQ GLMAGTLDIT LNVWGHEVGV SGEKEQVFTE
601: EGAKKVKWTP VTATPPGPVT WYKTYFDAPE GTDPVALKMD KMQKGMLWVN GKSLGRYWVS FLSPLGQPTQ SEYHVPRAFL KPSNNLLVVF EETGGHPEKI
701: EIVTVNRDTI CSMITEYHPP NVKNFESSGS KFCPVVEDLK AGAHLTCPDD NVIEKVEFAS YGDPDGACGN FTMGTCTSQN SIKVAEKYCL GKHTCTIPIE
801: RVTFDEPNKD PCPNIFKTLA VQVKCVVPKK N

Best Arabidopsis Sequence Match ( AT2G16730.1 )
(BLAST)

001: MKIHSSDHSW LLLAVLVILL SFSGALSSDD KEKKTKSVDK KKEVTYDGTS LIINGNRELL YSGSIHYPRS TPEMWPNIIK RAKQGGLNTI QTYVFWNVHE
101: PEQGKFNFSG RADLVKFIKL IEKNGLYVTL RLGPFIQAEW THGGLPYWLR EVPGIFFRTD NEPFKEHTER YVKVVLDMMK EEKLFASQGG PIILGQIENE
201: YSAVQRAYKE DGLNYIKWAS KLVHSMDLGI PWVMCKQNDA PDPMINACNG RHCGDTFPGP NKDNKPSLWT ENWTTQFRVF GDPPAQRSVE DIAYSVARFF
301: SKNGTHVNYY MYHGGTNFGR TSAHYVTTRY YDDAPLDEFG LEREPKYGHL KHLHNALNLC KKALLWGQPR VEKPSNETEI RYYEQPGTKV CAAFLANNNT
401: EAAEKIKFRG KEYLIPHRSI SILPDCKTVV YNTGEIISHH TSRNFMKSKK ANKNFDFKVF TESVPSKIKG DSFIPVELYG LTKDESDYGW YTTSFKIDDN
501: DLSKKKGGKP NLRIASLGHA LHVWLNGEYL GNGHGSHEEK SFVFQKPVTL KEGENHLTML GVLTGFPDSG SYMEHRYTGP RSVSILGLGS GTLDLTEENK
601: WGNKVGMEGE RLGIHAEEGL KKVKWEKASG KEPGMTWYQT YFDAPESQSA AAIRMNGMGK GLIWVNGEGV GRYWMSFLSP LGQPTQIEYH IPRSFLKPKK
701: NLLVIFEEEP NVKPELIDFV IVNRDTVCSY IGENYTPSVR HWTRKNDQVQ AITDDVHLTA NLKCSGTKKI SAVEFASFGN PNGTCGNFTL GSCNAPVSKK
801: VVEKYCLGKA ECVIPVNKST FEQDKKDSCP KVEKKLAVQV KCGRDKKN

Arabidopsis Description

BGAL13Beta-galactosidase 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU9]
SUBAcon: [golgi,extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.