Factsheet for Solyc02g084720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36360.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009096	Potato	endoplasmic reticulum, golgi, vacuole	99.17	99.17
VIT_04s0023g02690.t01	Wine grape	extracellular, golgi	81.89	81.89
KRH08131	Soybean	nucleus	78.34	78.07
KRH76716	Soybean	nucleus	78.22	77.86
KRH28740	Soybean	nucleus	77.99	77.26
KRH69834	Soybean	extracellular, golgi	77.51	77.24
CDX75569	Canola	golgi, vacuole	73.25	74.85
AT4G36360.1	Thale cress	endoplasmic reticulum, golgi, vacuole	75.74	74.77
CDX69219	Canola	vacuole	72.9	74.76
Bra011677.1-P	Field mustard	golgi, vacuole	75.62	74.65
CDY59693	Canola	vacuole	74.32	73.36
Solyc01g110000.2.1	Tomato	nucleus	61.66	71.66
GSMUA_Achr4P06620_001	Banana	cytosol	54.32	71.27
GSMUA_Achr9P21610_001	Banana	extracellular, golgi	71.36	70.69
Solyc04g080840.1.1	Tomato	extracellular, golgi	61.42	70.61
GSMUA_Achr4P13580_001	Banana	golgi, vacuole	71.95	70.05
Os03t0165400-01	Rice	vacuole	69.23	69.56
EER92805	Sorghum	vacuole	69.11	69.36
TraesCS4B01G280900.1	Wheat	golgi, vacuole	68.17	68.17
TraesCS4A01G022500.2	Wheat	golgi, vacuole	68.05	68.13
TraesCS4D01G279400.4	Wheat	vacuole	68.28	68.04
HORVU4Hr1G074280.4	Barley	vacuole	68.17	68.0
CDY59691	Canola	cytosol, nucleus, vacuole	28.05	67.33
Zm00001d048440_P003	Maize	vacuole	68.99	67.09
CDY59725	Canola	cytosol	23.91	64.74
Zm00001d027803_P002	Maize	golgi, plasma membrane, vacuole	69.47	63.94
Solyc12g008840.1.1	Tomato	extracellular	53.96	62.98
Solyc06g062580.2.1	Tomato	nucleus	62.37	62.66
Solyc12g044880.1.1	Tomato	golgi, vacuole	61.78	62.52
Solyc03g121540.2.1	Tomato	nucleus	61.66	62.17
Bra017756.1-P	Field mustard	cytosol, nucleus, vacuole	22.13	61.51
Solyc11g069270.1.1	Tomato	extracellular	52.54	52.11
Solyc11g018500.1.1	Tomato	cytosol, golgi, vacuole	42.13	51.22
Solyc02g078950.2.1	Tomato	vacuole	50.77	50.83
Solyc11g018490.1.1	Tomato	cytosol	44.85	50.2
Solyc03g019890.2.1	Tomato	nucleus	51.6	50.11
Solyc07g042220.1.1	Tomato	unclear	46.04	47.55
Solyc09g092160.2.1	Tomato	extracellular	48.76	46.19
Solyc01g111540.2.1	Tomato	unclear	41.78	42.48
Solyc10g055470.1.1	Tomato	vacuole	41.54	42.34

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
Gene3D:2.60.120.740	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	EMBL:AF154424	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0004565	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009505	GO:GO:0016787	GO:GO:0016798	GO:GO:0030246	GO:GO:0030312	InterPro:Galactose-bd-like_sf
InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR000922	InterPro:IPR008979
InterPro:Lectin_gal-bd_dom	PFAM:PF01301	PFAM:PF02140	PRINTS:PR00742	ScanProsite:PS01182	PFscan:PS50228
PANTHER:PTHR23421	PANTHER:PTHR23421:SF79	UniProt:Q9LLS9	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc02g084720.2	EnsemblPlants:Solyc02g084720.2.1	TMHMM:TMhelix	UniParc:UPI00000AA3C2	:	:

Description

Beta-galactosidase 3 [Source:Projected from Arabidopsis thaliana (AT4G36360) UniProtKB/Swiss-Prot;Acc:Q9SCV9]

Coordinates

chr2:-:47818628..47824752

Molecular Weight (calculated)

94094.8 Da

IEP (calculated)

7.296

GRAVY (calculated)

-0.258

Length

845 amino acids

Sequence
(BLAST)

001: MEVNSLQKWV LLWCIVLFIS SGLVHCDVTY DRKAIVINGQ RRLLFSGSIH YPRSTPEMWE DLINKAKEGG LDVVETYVFW NVHEPSPGNY NFEGRYDLVR
101: FVKTIQKAGL YAHLRIGPYV CAEWNFGGFP VWLKYVPGIS FRADNEPFKN AMKGYAEKIV NLMKSHNLFE SQGGPIILSQ IENEYGPQAK VLGAPGHQYS
201: TWAANMAVGL DTGVPWVMCK EEDAPDPVIN TCNGFYCDNF FPNKPYKPAI WTEAWSGWFS EFGGPLHQRP VQDLAFAVAQ FIQRGGSFVN YYMYHGGTNF
301: GRTAGGPFIT TSYDYDAPID EYGLIRQPKY GHLKELHRAV KMCEKSIVSA DPAITSLGNL QQAYVYSSET GGCAAFLSNN DWKSAARVMF NNMHYNLPPW
401: SISILPDCRN VVFNTAKVGV QTSKMEMLPT NSEMLSWETY SEDISALDDS SSIRSFGLLE QINVTRDTSD YLWYITSVDI GSTESFLHGG ELPTLIVETT
501: GHAMHVFING QLSGSAFGTR KNRRFVFKGK VNLRAGSNRI ALLSVAVGLP NIGGHFETWS TGVLGPVAIQ GLDHGKWDLS WAKWTYQVGL KGEAMNLVST
601: NGISAVDWMQ GSLIAQKQQP LTWHKAYFNT PEGDEPLALD MSSMGKGQVW INGQSIGRYW TAYATGDCNG CQYSGVFRPP KCQLGCGEPT QKWYHVPRSW
701: LKPTQNLLVL FEELGGDPTR ISLVKRSVTN VCSNVAEYHP NIKNWQIENY GKTEEFHLPK VRIHCAPGQS ISSIKFASFG TPLGTCGSFK QGTCHAPDSH
801: AVVEKKCLGR QTCAVTISNS NFGEDPCPNV LKRLSVEAHC TPTQN

Best Arabidopsis Sequence Match ( AT4G36360.1 )
(BLAST)

001: MREMGTGDSA SRLILWFCLG FLILGVGFVQ CGVTYDRKAL LINGQRRILF SGSIHYPRST PDMWEDLIQK AKDGGIDVIE TYVFWNLHEP SPGKYDFEGR
101: NDLVRFVKTI HKAGLYAHLR IGPYVCAEWN FGGFPVWLKY VPGISFRTDN EPFKRAMKGF TERIVELMKS ENLFESQGGP IILSQIENEY GRQGQLLGAE
201: GHNYMTWAAK MAIATETGVP WVMCKEDDAP DPVINTCNGF YCDSFAPNKP YKPLIWTEAW SGWFTEFGGP MHHRPVQDLA FGVARFIQKG GSFVNYYMYH
301: GGTNFGRTAG GPFVTTSYDY DAPIDEYGLI RQPKYGHLKE LHRAIKMCEK ALVSADPVVT SIGNKQQAHV YSAESGDCSA FLANYDTESA ARVLFNNVHY
401: NLPPWSISIL PDCRNAVFNT AKVGVQTSQM EMLPTDTKNF QWESYLEDLS SLDDSSTFTT HGLLEQINVT RDTSDYLWYM TSVDIGDSES FLHGGELPTL
501: IIQSTGHAVH IFVNGQLSGS AFGTRQNRRF TYQGKINLHS GTNRIALLSV AVGLPNVGGH FESWNTGILG PVALHGLSQG KMDLSWQKWT YQVGLKGEAM
601: NLAFPTNTPS IGWMDASLTV QKPQPLTWHK TYFDAPEGNE PLALDMEGMG KGQIWVNGES IGRYWTAFAT GDCSHCSYTG TYKPNKCQTG CGQPTQRWYH
701: VPRAWLKPSQ NLLVIFEELG GNPSTVSLVK RSVSGVCAEV SEYHPNIKNW QIESYGKGQT FHRPKVHLKC SPGQAIASIK FASFGTPLGT CGSYQQGECH
801: AATSYAILER KCVGKARCAV TISNSNFGKD PCPNVLKRLT VEAVCAPETS VSTWRP

Arabidopsis Description

BGAL3Beta-galactosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV9]
SUBAcon: [endoplasmic reticulum,golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.