Factsheet for GSMUA_Achr2P16780_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
golgi 3
vacuole 2
extracellular 2
endoplasmic reticulum 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	golgi
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13750.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P00880_001	Banana	golgi, vacuole	75.86	86.92
GSMUA_Achr7P08970_001	Banana	vacuole	74.08	85.34
GSMUA_Achr7P08960_001	Banana	endoplasmic reticulum, golgi, vacuole	72.65	83.02
GSMUA_Achr7P08950_001	Banana	golgi, vacuole	72.06	82.34
GSMUA_Achr7P08940_001	Banana	vacuole	70.75	81.28
EER88554	Sorghum	golgi, vacuole	63.61	73.79
Zm00001d046357_P001	Maize	extracellular	62.78	73.13
TraesCS6A01G185400.1	Wheat	golgi, vacuole	62.78	72.93
TraesCS7B01G264200.1	Wheat	plasma membrane, vacuole	62.07	72.7
Os06t0573600-01	Rice	plasma membrane, vacuole	61.71	72.59
TraesCS6B01G214100.1	Wheat	golgi, vacuole	62.31	72.28
TraesCS6D01G172400.1	Wheat	golgi, vacuole	62.31	72.28
TraesCS7D01G359500.1	Wheat	golgi	61.59	72.25
TraesCS7A01G363600.1	Wheat	plasma membrane, vacuole	61.59	72.14
CDX88594	Canola	golgi, vacuole	27.82	72.0
Os02t0219200-01	Rice	peroxisome, vacuole	42.81	72.0
CDX76255	Canola	extracellular	10.94	71.88
EES06516	Sorghum	mitochondrion, plastid	62.9	71.49
HORVU6Hr1G039490.6	Barley	plastid	64.21	70.68
HORVU7Hr1G086690.2	Barley	plasma membrane, vacuole	62.31	70.15
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	55.65	69.85
Solyc12g008840.1.1	Tomato	extracellular	59.81	69.48
KRH12385	Soybean	vacuole	59.1	68.93
KRH37385	Soybean	nucleus	58.86	68.65
CDX94367	Canola	mitochondrion	57.31	67.7
AT5G56870.1	Thale cress	vacuole	58.15	67.54
Bra019644.1-P	Field mustard	golgi, plastid, vacuole	56.84	67.13
GSMUA_Achr6P35850_001	Banana	golgi, vacuole	65.76	67.11
CDY11899	Canola	golgi, vacuole	57.43	66.9
Bra006850.1-P	Field mustard	golgi, vacuole	57.31	66.76
CDX95380	Canola	vacuole	56.96	65.89
Bra013956.1-P	Field mustard	cytosol, mitochondrion, plastid, vacuole	57.19	65.71
CDY32919	Canola	golgi, vacuole	55.89	65.1
Bra035634.1-P	Field mustard	golgi, vacuole	55.89	65.1
CDY20708	Canola	golgi, vacuole	55.77	64.96
AT4G26140.7	Thale cress	vacuole	58.15	64.94
CDX89360	Canola	mitochondrion	53.86	64.81
CDX76254	Canola	golgi, nucleus, vacuole	45.07	64.46
Bra019120.1-P	Field mustard	golgi, vacuole	54.22	64.04
CDX92753	Canola	golgi, vacuole	54.22	64.04
CDY42755	Canola	vacuole	54.1	63.9
KRH44153	Soybean	nucleus	63.26	63.11
KRH47126	Soybean	nucleus	63.02	62.72
KRH10007	Soybean	nucleus	62.54	62.62
CDY69471	Canola	cytosol	30.92	62.5
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	62.43	62.43
CDY70594	Canola	cytosol	30.8	62.26
Zm00001d053585_P002	Maize	plastid	61.36	62.24
CDY23637	Canola	golgi, vacuole	61.83	61.98
Bra027403.1-P	Field mustard	golgi, vacuole	61.71	61.86
CDX97513	Canola	golgi, vacuole	61.71	61.79
VIT_11s0016g02200.t01	Wine grape	vacuole	61.36	61.72
AT3G52840.2	Thale cress	golgi, vacuole	57.31	61.72
KRH23324	Soybean	vacuole	61.71	61.71
CDY51738	Canola	golgi, vacuole	61.24	61.38
CDY37486	Canola	golgi, vacuole	61.12	61.26
PGSC0003DMT400083896	Potato	extracellular	60.76	61.2
AT3G13750.1	Thale cress	golgi, vacuole	61.59	61.16
Solyc12g044880.1.1	Tomato	golgi, vacuole	60.64	61.08
KRH02714	Soybean	golgi, vacuole	60.88	61.02
KRH19154	Soybean	golgi, mitochondrion, plastid, vacuole	60.76	60.91
Solyc03g121540.2.1	Tomato	nucleus	60.4	60.62
PGSC0003DMT400006654	Potato	golgi, vacuole	60.17	60.38
PGSC0003DMT400012359	Potato	golgi, vacuole	60.29	60.36
Solyc06g062580.2.1	Tomato	nucleus	60.29	60.29
Bra021506.1-P	Field mustard	vacuole	61.36	59.93
GSMUA_Achr9P21610_001	Banana	extracellular, golgi	57.79	56.98
GSMUA_Achr4P13580_001	Banana	golgi, vacuole	56.96	55.18
GSMUA_Achr4P06620_001	Banana	cytosol	40.43	52.8
GSMUA_Achr6P18730_001	Banana	golgi, vacuole	45.78	50.66
GSMUA_Achr4P22060_001	Banana	golgi, vacuole	49.23	49.29
GSMUA_Achr4P20830_001	Banana	golgi, vacuole	51.01	49.25
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	25.92	48.77
GSMUA_Achr4P25980_001	Banana	extracellular, golgi, vacuole	34.36	46.69
GSMUA_Achr4P26030_001	Banana	cytosol, peroxisome, vacuole	29.25	46.42
GSMUA_Achr2P21790_001	Banana	golgi, vacuole	43.28	43.28
GSMUA_Achr2P21230_001	Banana	extracellular, golgi, vacuole	45.07	43.17
GSMUA_Achr5P11870_001	Banana	extracellular, golgi	40.07	42.93
GSMUA_AchrUn_...	Banana	extracellular, vacuole	41.5	42.77
GSMUA_Achr11P...	Banana	golgi, vacuole	40.78	41.98
GSMUA_Achr1P14790_001	Banana	vacuole	40.55	41.33
GSMUA_Achr1P26480_001	Banana	vacuole	39.6	40.96
GSMUA_Achr4P05130_001	Banana	golgi, plastid, vacuole	40.67	40.76
GSMUA_Achr5P11850_001	Banana	extracellular, golgi	39.83	37.31

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
MapMan:21.3.2.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
GO:GO:0016798	EnsemblPlantsGene:GSMUA_Achr2G16780_001	EnsemblPlants:GSMUA_Achr2P16780_001	EnsemblPlants:GSMUA_Achr2T16780_001	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat
InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	UniProt:M0S8L9	PFAM:PF01301	PRINTS:PR00742
PANTHER:PTHR23421	PANTHER:PTHR23421:SF74	SUPFAM:SSF49785	SUPFAM:SSF51445	TMHMM:TMhelix	UniParc:UPI0002955C3E
SEG:seg	:	:	:	:	:

Description

Beta-galactosidase [Source:GMGC_GENE;Acc:GSMUA_Achr2G16780_001]

Coordinates

chr2:+:17543403..17549250

Molecular Weight (calculated)

92760.5 Da

IEP (calculated)

8.546

GRAVY (calculated)

-0.202

Length

841 amino acids

Sequence
(BLAST)

001: MSGGMKPPCH CGAMGPTFRR QSSAHSHPSG IKPQWHPQLT LHASPVFSFP LLLSVSVFVL PLVNSFINSS LIQKYHFLEF STHCLFLFKR GVFGSQEYSS
101: AIMGVEPIPV GRGQGRSALL LLLAVAAAVM LSSPWLVTPV DASVSYDRKA LIINGRRRIL ISGSIHYPRS TPEMWPDLIQ KAKDGGLDVI QTYVFWNGHE
201: PSPGQYYFGG NYDLVRFVKL VKQAGLYVHL RIGPYVCAEW NFGGFPVWLK YVPGISFRTD NEPFKAAMSK FTEKIVSVMK SEGLFESQGG PIILSQQIEN
301: EYGPLEDYYG GGVAKNYASW AAHMAVGLNT GVPWVMCKQD DAPDPVINTC NGFYCDDFSP NKPYKPTMWT EAWTAWYTAF GGPVPERPVE DLAFAVARFI
401: QKGGSFVNYY MYHGGTNFGR TAGGPFISTS YDYDAPIDEY GLLRKPKWGH LRDMHKAIKM CEPALVSADA TVTKLGNYEQ AHVFKSKSGA CAAFLSNYNP
501: KSSAIVTYNG KKYDIPPWSI SILPDCKTAV FNTARVGAQT SQVKMSPVGK FSWTSFSEET NSLDDNSFTK NGLVEQISMT WDRTDYLWYT TSIDIGRNEN
601: FLKNGQNPVL TVMSAGHAMH VFINGQKAGT VYGGLDSPKL TYTGNVKLWA GSNKISILSV AVGLPNVGNH FETWNVGVLG PVTLEGLNEG RIDLTSQKWT
701: YQIGLRGESL NLHTISGSSS VEWGGASINQ PLTWYKAFFN APAGNEPLAL DMSSMGKGEA WINGQSIGRY WPAYKAYGSC GGCDYHGTYS EKKCQTKCGE
801: SSQKWYHVPR SWLNPTGNLV VVFEEWGGNP TGINLVKRTA I

Best Arabidopsis Sequence Match ( AT4G26140.1 )
(BLAST)

001: MGLNFREKAW ILLGILCCSS LICSVKAIVT YDRKAVIING QRRILLSGSI HYPRSTPEMW PDLIQKAKDG GLDVIQTYVF WNGHEPSPGQ YYFEDRYDLV
101: KFIKVVQQAG LYVHLRIGPY VCAEWNFGGF PVWLKYVPGM VFRTDNEPFK AAMQKFTEKI VRMMKEEKLF ETQGGPIILS QIENEYGPIE WEIGAPGKAY
201: TKWVAEMAQG LSTGVPWIMC KQDDAPNSII NTCNGFYCEN FKPNSDNKPK MWTENWTGWF TEFGGAVPYR PAEDIALSVA RFIQNGGSFI NYYMYHGGTN
301: FDRTAGEFIA TSYDYDAPLD EYGLPREPKY SHLKRLHKVI KLCEPALVSA DPTVTSLGDK QEAHVFKSKS SCAAFLSNYN TSSAARVLFG GSTYDLPPWS
401: VSILPDCKTE YYNTAKVQVR TSSIHMKMVP TNTPFSWGSY NEEIPSANDN GTFSQDGLVE QISITRDKTD YFWYLTDITI SPDEKFLTGE DPLLTIGSAG
501: HALHVFVNGQ LAGTAYGSLE KPKLTFSQKI KLHAGVNKLA LLSTAAGLPN VGVHYETWNT GVLGPVTLNG VNSGTWDMTK WKWSYKIGTK GEALSVHTLA
601: GSSTVEWKEG SLVAKKQPLT WYKSTFDSPT GNEPLALDMN TMGKGQMWIN GQNIGRHWPA YTARGKCERC SYAGTFTEKK CLSNCGEASQ RWYHVPRSWL
701: KPTNNLVIVL EEWGGEPNGI SLVKRTAK

Arabidopsis Description

BGAL12beta-galactosidase 12 [Source:TAIR;Acc:AT4G26140]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.