CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 7
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13750.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046357_P001	Maize	extracellular	93.93	94.32
TraesCS7B01G264200.1	Wheat	plasma membrane, vacuole	87.59	88.44
TraesCS7D01G359500.1	Wheat	golgi	87.17	88.15
TraesCS7A01G363600.1	Wheat	plasma membrane, vacuole	87.03	87.88
Os06t0573600-01	Rice	plasma membrane, vacuole	85.24	86.43
HORVU7Hr1G086690.2	Barley	plasma membrane, vacuole	86.76	84.2
EES06516	Sorghum	mitochondrion, plastid	80.14	78.51
GSMUA_Achr7P08970_001	Banana	vacuole	72.97	72.47
GSMUA_Achr6P00880_001	Banana	golgi, vacuole	72.14	71.25
GSMUA_Achr7P08960_001	Banana	endoplasmic reticulum, golgi, vacuole	72.0	70.92
GSMUA_Achr7P08940_001	Banana	vacuole	71.59	70.9
GSMUA_Achr7P08950_001	Banana	golgi, vacuole	71.03	69.97
CDX88594	Canola	golgi, vacuole	31.17	69.54
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	61.79	66.87
CDX76255	Canola	extracellular	11.72	66.41
Bra019644.1-P	Field mustard	golgi, plastid, vacuole	65.1	66.29
Solyc12g008840.1.1	Tomato	extracellular	65.66	65.75
CDX94367	Canola	mitochondrion	64.41	65.59
CDX95380	Canola	vacuole	65.1	64.92
KRH37385	Soybean	nucleus	64.14	64.49
CDX76254	Canola	golgi, nucleus, vacuole	52.14	64.29
KRH12385	Soybean	vacuole	63.86	64.22
AT5G56870.1	Thale cress	vacuole	63.86	63.95
Bra013956.1-P	Field mustard	cytosol, mitochondrion, plastid, vacuole	64.28	63.66
GSMUA_Achr2P16780_001	Banana	plastid	73.79	63.61
CDX89360	Canola	mitochondrion	60.83	63.09
CDY11899	Canola	golgi, vacuole	62.62	62.88
Bra006850.1-P	Field mustard	golgi, vacuole	62.48	62.74
CDX92753	Canola	golgi, vacuole	61.38	62.5
Bra019120.1-P	Field mustard	golgi, vacuole	61.24	62.36
CDY42755	Canola	vacuole	61.1	62.22
AT4G26140.7	Thale cress	vacuole	63.86	61.49
Bra035634.1-P	Field mustard	golgi, vacuole	60.83	61.08
CDY32919	Canola	golgi, vacuole	60.83	61.08
CDY20708	Canola	golgi, vacuole	60.69	60.94
OQU87043	Sorghum	golgi, vacuole	68.28	59.85
AT3G52840.2	Thale cress	golgi, vacuole	63.17	58.64
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	67.59	58.26
CDX97513	Canola	golgi, vacuole	67.17	57.98
KRH10007	Soybean	nucleus	67.17	57.98
CDY23637	Canola	golgi, vacuole	67.03	57.93
Bra027403.1-P	Field mustard	golgi, vacuole	67.03	57.93
KRH23324	Soybean	vacuole	67.03	57.79
KRH44153	Soybean	nucleus	67.17	57.77
KRH47126	Soybean	nucleus	67.31	57.75
CDY69471	Canola	cytosol	33.1	57.69
CDY51738	Canola	golgi, vacuole	66.62	57.57
CDY70594	Canola	cytosol	32.83	57.21
CDY37486	Canola	golgi, vacuole	66.21	57.21
PGSC0003DMT400083896	Potato	extracellular	65.79	57.13
Solyc12g044880.1.1	Tomato	golgi, vacuole	65.66	57.01
AT3G13750.1	Thale cress	golgi, vacuole	66.48	56.91
KRH19154	Soybean	golgi, mitochondrion, plastid, vacuole	65.79	56.85
PGSC0003DMT400006654	Potato	golgi, vacuole	65.66	56.8
Solyc03g121540.2.1	Tomato	nucleus	65.52	56.68
KRH02714	Soybean	golgi, vacuole	65.52	56.62
Solyc06g062580.2.1	Tomato	nucleus	65.66	56.6
PGSC0003DMT400012359	Potato	golgi, vacuole	65.24	56.31
Bra021506.1-P	Field mustard	vacuole	66.76	56.21
VIT_11s0016g02200.t01	Wine grape	vacuole	64.14	55.62
EER92805	Sorghum	vacuole	61.66	53.09
EER92534	Sorghum	endoplasmic reticulum, golgi	54.76	46.16
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	28.14	45.64
EES01845	Sorghum	endoplasmic reticulum, golgi, vacuole	50.9	43.77
EES16726	Sorghum	extracellular	51.45	40.41
EES03081	Sorghum	extracellular	45.24	39.52
KXG22057	Sorghum	vacuole	43.17	37.44
KXG25431	Sorghum	golgi	40.14	34.32
KXG36088	Sorghum	endoplasmic reticulum, golgi, vacuole	38.76	33.57

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
MapMan:21.3.2.2.2	Gene3D:3.20.20.80	EntrezGene:8065029	UniProt:C5Z534	EnsemblPlants:EER88554	ProteinID:EER88554
ProteinID:EER88554.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0004565	GO:GO:0005575
GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	GO:GO:0030312	InterPro:Galactose-bd-like_sf
InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	PFAM:PF01301
PRINTS:PR00742	ScanProsite:PS01182	PANTHER:PTHR23421	PANTHER:PTHR23421:SF120	MetaCyc:PWY-6807	EnsemblPlantsGene:SORBI_3010G173800
SUPFAM:SSF49785	SUPFAM:SSF51445	unigene:Sbi.829	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0001A892AA
RefSeq:XP_002437187.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:50930628..50935313

Molecular Weight (calculated)

79153.3 Da

IEP (calculated)

7.929

GRAVY (calculated)

-0.208

Length

725 amino acids

Sequence
(BLAST)

001: MMSGGVLFLA LLAAAAALAI IVAPSPANAA VSYDHRAVVI NGQRRILISG SIHYPRSTPE MWPDLLQKAK DGGLDVVQTY VFWNGHEPQQ GQYYFGDRYD
101: LVRFVKLAKQ AGLFVHLRIG PYVCAEWNFG GFPVWLKYVP GVSFRTDNAP FKAAMQAFVE KIVSMMKAEG LFEWQGGPII LAQVENEYGP MESVMGGGAK
201: PYANWAAKMA VATGAGVPWV MCKQDDAPDP VINTCNGFYC DYFSPNSNSK PTMWTEAWTG WFTAFGGAVP HRPVEDMAFA VARFIQKGGS FVNYYMYHGG
301: TNFDRTSGGP FIATSYDYDA PIDEYGLLRQ PKWGHLRDLH KAIKQAEPAL VSGDPTIQTI GNYEKAYVYK SSSGACAAFL SNYHTNAAAR VVFNGRRYDL
401: PAWSISVLPD CRTAVFNTAT VSSPSAPARM TPAGGFSWQS YSEATNSLDD RAFTKDGLVE QLSMTWDKSD YLWYTTYVNI NSNEQFLKSG QWPQLTIYSA
501: GHALQVFVNG QSYGAAYGGY DSPKLTYSGY VKMWQGSNKI SILSAAVGLP NQGTHYEAWN VGVLGPVTLS GLNEGKRDLS NQKWTYQIGL HGESLGVHSV
601: AGSSSVEWGS AAGKQPLTWH KAYFNAPSGN APVALDMSSM GKGQAWVNGH HIGRYWSYKA TGGSCGGCSY AGTYSETKCQ TGCGDVSQRY YHVPRSWLNP
701: SGNLLVVLEE FGGDLSGVKL VTRTT

Best Arabidopsis Sequence Match ( AT3G13750.1 )
(BLAST)

001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA

Arabidopsis Description

BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.