Skip to main content
crop-pal logo
Sorghum
Search for another protein from :
Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid

Predictor Summary:
  • plastid 3
  • golgi 3
  • mitochondrion 3
  • vacuole 2
  • extracellular 2
  • endoplasmic reticulum 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plastid
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
EpiLoc:golgi
iPSORT:mitochondrion
MultiLoc:vacuole
Plant-mPloc:extracellular
Predotar:mitochondrion
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:golgi
PPI

Inferred distinct locusB in Crop

locusBlocations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G13750.1 OQU92006 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os02t0219200-01 Rice peroxisome, vacuole 59.59 88.2
TraesCS6B01G214100.1 Wheat golgi, vacuole 86.35 88.14
TraesCS6A01G185400.1 Wheat golgi, vacuole 85.95 87.85
TraesCS6D01G172400.1 Wheat golgi, vacuole 85.68 87.45
HORVU6Hr1G039490.6 Barley plastid 86.89 84.16
Zm00001d053585_P002 Maize plastid 92.16 82.27
EER88554 Sorghum golgi, vacuole 78.51 80.14
GSMUA_Achr7P08970_001 Banana vacuole 70.95 71.92
GSMUA_Achr6P00880_001 Banana golgi, vacuole 70.27 70.84
GSMUA_Achr7P08960_001 Banana endoplasmic reticulum, golgi, vacuole 69.86 70.24
GSMUA_Achr7P08940_001 Banana vacuole 68.78 69.54
GSMUA_Achr7P08950_001 Banana golgi, vacuole 69.05 69.43
CDX88594 Canola golgi, vacuole 30.27 68.92
CDX76255 Canola extracellular 11.62 67.19
PGSC0003DMT400000899 Potato nucleus, peroxisome, vacuole 59.86 66.12
Solyc12g008840.1.1 Tomato extracellular 63.92 65.33
KRH12385 Soybean vacuole 63.51 65.19
KRH37385 Soybean nucleus 63.38 65.05
Bra019644.1-P Field mustard golgi, plastid, vacuole 62.16 64.61
CDX94367 Canola mitochondrion 61.49 63.9
CDX95380 Canola vacuole 62.43 63.55
GSMUA_Achr2P16780_001 Banana plastid 71.49 62.9
AT5G56870.1 Thale cress vacuole 61.35 62.71
CDX76254 Canola golgi, nucleus, vacuole 49.46 62.24
Bra013956.1-P Field mustard cytosol, mitochondrion, plastid, vacuole 61.49 62.16
CDY11899 Canola golgi, vacuole 60.0 61.5
Bra006850.1-P Field mustard golgi, vacuole 59.59 61.08
CDX89360 Canola mitochondrion 57.57 60.94
CDX92753 Canola golgi, vacuole 58.51 60.81
CDY42755 Canola vacuole 58.11 60.39
Bra019120.1-P Field mustard golgi, vacuole 57.97 60.25
CDY32919 Canola golgi, vacuole 58.38 59.83
Bra035634.1-P Field mustard golgi, vacuole 58.24 59.7
CDY20708 Canola golgi, vacuole 58.11 59.56
VIT_09s0002g02120.t01 Wine grape golgi, vacuole 67.43 59.33
AT4G26140.7 Thale cress vacuole 60.27 59.23
OQU87043 Sorghum golgi, vacuole 65.81 58.89
Bra027403.1-P Field mustard golgi, vacuole 65.95 58.16
CDY23637 Canola golgi, vacuole 65.81 58.05
CDX97513 Canola golgi, vacuole 65.81 57.98
AT3G52840.2 Thale cress golgi, vacuole 60.95 57.75
KRH10007 Soybean nucleus 65.54 57.74
AT3G13750.1 Thale cress golgi, vacuole 65.95 57.62
CDY37486 Canola golgi, vacuole 65.27 57.57
CDY51738 Canola golgi, vacuole 65.14 57.45
KRH44153 Soybean nucleus 65.41 57.41
KRH23324 Soybean vacuole 64.86 57.07
KRH47126 Soybean nucleus 65.0 56.92
Solyc03g121540.2.1 Tomato nucleus 64.19 56.68
Solyc06g062580.2.1 Tomato nucleus 64.32 56.6
PGSC0003DMT400006654 Potato golgi, vacuole 64.05 56.56
PGSC0003DMT400083896 Potato extracellular 63.78 56.53
PGSC0003DMT400012359 Potato golgi, vacuole 64.05 56.43
Solyc12g044880.1.1 Tomato golgi, vacuole 63.65 56.41
Bra021506.1-P Field mustard vacuole 65.27 56.1
KRH19154 Soybean golgi, mitochondrion, plastid, vacuole 63.51 56.02
KRH02714 Soybean golgi, vacuole 63.51 56.02
CDY70594 Canola cytosol 31.35 55.77
VIT_11s0016g02200.t01 Wine grape vacuole 62.84 55.62
CDY69471 Canola cytosol 31.08 55.29
EER92805 Sorghum vacuole 59.19 52.02
EER92534 Sorghum endoplasmic reticulum, golgi 53.51 46.05
PGSC0003DMT400011458 Potato cytosol, nucleus, peroxisome 26.76 44.3
EES01845 Sorghum endoplasmic reticulum, golgi, vacuole 49.59 43.53
EES16726 Sorghum extracellular 50.0 40.09
EES03081 Sorghum extracellular 44.86 40.0
KXG22057 Sorghum vacuole 43.65 38.64
KXG25431 Sorghum golgi 41.08 35.85
KXG36088 Sorghum endoplasmic reticulum, golgi, vacuole 39.46 34.89
Protein Annotations
KEGG:00052+3.2.1.23KEGG:00511+3.2.1.23KEGG:00531+3.2.1.23KEGG:00600+3.2.1.23KEGG:00604+3.2.1.23Gene3D:2.60.120.260
MapMan:21.3.2.2.2Gene3D:3.20.20.80EntrezGene:8082959UniProt:C5XY33EnsemblPlants:EES06516ProteinID:EES06516
ProteinID:EES06516.1GO:GO:0003674GO:GO:0003824GO:GO:0004553GO:GO:0004565GO:GO:0005575
GO:GO:0005618GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005975
GO:GO:0008150GO:GO:0008152GO:GO:0016787GO:GO:0016798GO:GO:0030312InterPro:Galactose-bd-like_sf
InterPro:Gly_Hdrlase_35_catInterPro:Glyco_hydro_35_CSInterPro:Glycoside_Hdrlase_35InterPro:Glycoside_hydrolase_SFInterPro:IPR008979PFAM:PF01301
PRINTS:PR00742ScanProsite:PS01182PANTHER:PTHR23421PANTHER:PTHR23421:SF70MetaCyc:PWY-6807EnsemblPlantsGene:SORBI_3004G093400
SUPFAM:SSF49785SUPFAM:SSF51445SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0001A85D35RefSeq:XP_002453540.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr4:-:7964262..7969091
Molecular Weight (calculated)
81778.2 Da
IEP (calculated)
9.139
GRAVY (calculated)
-0.246
Length
740 amino acids
Sequence
(BLAST)
001: MAAARRLLAA CSSGGGAGAG AGSRILLAVF FLAASLLASA ANAAVSYDHR SLVINGRRRI LISGSIHYPR STPEMWPGLI QKAKDGGLDV IQTYVFWNGH
101: EPVQGQYHFA DRYDLVRFVK LVRQAGLYVH LRIGPYVCAE WNFGGFPVWL KYVPGIRFRT DNGPFKAAMQ KFVEKIVSMM KSEGLFEWQG GPIIMAQVEN
201: EFGPMESVVG SGAKPYAHWA AQMAVGTNTG VPWVMCKQDD APDPVINTCN GFYCDYFTPN RKYKPTMWTE AWTGWFTKFG GALPHRPVED LAFAVARFIQ
301: KGGSFVNYYM YHGGTNFGRT AGGPFIATSY DYDAPIDEFG LLRQPKWGHL RDLHRAIKQA EPALISGDPT IQSIGNYEKA YIFKSKNGAC AAFLSNYHMK
401: TAVKIRFDGR HYDLPAWSIS ILPDCKTAVF NTATVKEPTL LPKMNPVLHF AWQSYSEDTN SLDDSAFTRN GLVEQLSLTW DKSDYLWYTT HVSIGGNEQF
501: LKSGQWPQLT VYSAGHSMQV FVNGRSYGSV YGGYDNPKLT FNGHVKMWQG SNKISILSSA VGLPNNGNHF ELWNVGVLGP VTLSGLNEGK RDLSHQKWTY
601: QVGLKGESLG LHTVTGSSAV EWAGPGGKQP LTWHKALFNA PAGSDPVALD MGSMGKGQIW VNGHHAGRYW SYRAYSGSCR RCSYAGTYRE DQCLSNCGDI
701: SQRWYHVPRS WLKPSGNLLV VLEEYGGGDL AGVTLATRTT
Best Arabidopsis Sequence Match ( AT3G13750.1 )
(BLAST)
001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA
Arabidopsis Description
BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.