Subcellular Localization
min:
: max
Winner_takes_all: golgi, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 4
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13750.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT3G13750.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT3G13750.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G214100.1 | Wheat | golgi, vacuole | 96.83 | 96.83 |
| TraesCS6A01G185400.1 | Wheat | golgi, vacuole | 96.69 | 96.82 |
| HORVU6Hr1G039490.6 | Barley | plastid | 96.0 | 91.1 |
| Os02t0219200-01 | Rice | peroxisome, vacuole | 60.69 | 88.0 |
| EES06516 | Sorghum | mitochondrion, plastid | 87.45 | 85.68 |
| TraesCS7D01G359500.1 | Wheat | golgi | 80.28 | 81.17 |
| Zm00001d053585_P002 | Maize | plastid | 84.83 | 74.19 |
| GSMUA_Achr7P08970_001 | Banana | vacuole | 71.59 | 71.1 |
| GSMUA_Achr6P00880_001 | Banana | golgi, vacuole | 71.45 | 70.57 |
| GSMUA_Achr7P08960_001 | Banana | endoplasmic reticulum, golgi, vacuole | 70.34 | 69.29 |
| CDX88594 | Canola | golgi, vacuole | 31.03 | 69.23 |
| GSMUA_Achr7P08950_001 | Banana | golgi, vacuole | 69.93 | 68.89 |
| CDX76255 | Canola | extracellular | 12.14 | 68.75 |
| GSMUA_Achr7P08940_001 | Banana | vacuole | 69.38 | 68.72 |
| PGSC0003DMT400000899 | Potato | nucleus, peroxisome, vacuole | 60.41 | 65.37 |
| KRH37385 | Soybean | nucleus | 64.97 | 65.33 |
| KRH12385 | Soybean | vacuole | 64.97 | 65.33 |
| Solyc12g008840.1.1 | Tomato | extracellular | 64.83 | 64.92 |
| Bra019644.1-P | Field mustard | golgi, plastid, vacuole | 63.03 | 64.19 |
| CDX94367 | Canola | mitochondrion | 62.9 | 64.04 |
| CDX95380 | Canola | vacuole | 63.45 | 63.27 |
| AT5G56870.1 | Thale cress | vacuole | 62.48 | 62.57 |
| GSMUA_Achr2P16780_001 | Banana | plastid | 72.28 | 62.31 |
| Bra013956.1-P | Field mustard | cytosol, mitochondrion, plastid, vacuole | 62.9 | 62.3 |
| CDY11899 | Canola | golgi, vacuole | 61.66 | 61.91 |
| Bra006850.1-P | Field mustard | golgi, vacuole | 61.52 | 61.77 |
| CDX76254 | Canola | golgi, nucleus, vacuole | 49.93 | 61.56 |
| CDX89360 | Canola | mitochondrion | 59.31 | 61.52 |
| CDX92753 | Canola | golgi, vacuole | 60.0 | 61.1 |
| CDY42755 | Canola | vacuole | 59.59 | 60.67 |
| CDY32919 | Canola | golgi, vacuole | 60.41 | 60.66 |
| Bra019120.1-P | Field mustard | golgi, vacuole | 59.45 | 60.53 |
| Bra035634.1-P | Field mustard | golgi, vacuole | 60.28 | 60.53 |
| CDY20708 | Canola | golgi, vacuole | 60.14 | 60.39 |
| AT4G26140.7 | Thale cress | vacuole | 62.21 | 59.89 |
| Bra027403.1-P | Field mustard | golgi, vacuole | 67.45 | 58.28 |
| AT3G52840.2 | Thale cress | golgi, vacuole | 62.76 | 58.26 |
| CDY23637 | Canola | golgi, vacuole | 67.31 | 58.16 |
| CDX97513 | Canola | golgi, vacuole | 67.31 | 58.1 |
| TraesCS3D01G211500.2 | Wheat | golgi, vacuole | 66.9 | 58.08 |
| VIT_09s0002g02120.t01 | Wine grape | golgi, vacuole | 67.31 | 58.03 |
| CDY51738 | Canola | golgi, vacuole | 66.76 | 57.69 |
| AT3G13750.1 | Thale cress | golgi, vacuole | 67.31 | 57.62 |
| CDY37486 | Canola | golgi, vacuole | 66.62 | 57.57 |
| KRH44153 | Soybean | nucleus | 66.21 | 56.94 |
| KRH10007 | Soybean | nucleus | 65.93 | 56.9 |
| KRH47126 | Soybean | nucleus | 65.93 | 56.57 |
| KRH23324 | Soybean | vacuole | 65.38 | 56.36 |
| Bra021506.1-P | Field mustard | vacuole | 66.9 | 56.33 |
| CDY69471 | Canola | cytosol | 32.28 | 56.25 |
| CDY70594 | Canola | cytosol | 32.28 | 56.25 |
| Solyc03g121540.2.1 | Tomato | nucleus | 64.97 | 56.21 |
| PGSC0003DMT400006654 | Potato | golgi, vacuole | 64.83 | 56.09 |
| PGSC0003DMT400083896 | Potato | extracellular | 64.55 | 56.05 |
| Solyc06g062580.2.1 | Tomato | nucleus | 64.97 | 56.0 |
| Solyc12g044880.1.1 | Tomato | golgi, vacuole | 64.41 | 55.93 |
| PGSC0003DMT400012359 | Potato | golgi, vacuole | 64.55 | 55.71 |
| KRH19154 | Soybean | golgi, mitochondrion, plastid, vacuole | 64.28 | 55.54 |
| KRH02714 | Soybean | golgi, vacuole | 64.28 | 55.54 |
| VIT_11s0016g02200.t01 | Wine grape | vacuole | 63.31 | 54.9 |
| TraesCS4D01G279400.4 | Wheat | vacuole | 60.28 | 51.53 |
| TraesCS4D01G220800.2 | Wheat | vacuole | 55.17 | 46.14 |
| PGSC0003DMT400011458 | Potato | cytosol, nucleus, peroxisome | 26.76 | 43.4 |
| TraesCS3D01G379300.2 | Wheat | vacuole | 50.34 | 43.25 |
| TraesCS3D01G379200.1 | Wheat | vacuole | 50.21 | 43.13 |
| TraesCS5D01G148400.1 | Wheat | unclear | 51.17 | 40.68 |
| TraesCS1D01G024200.1 | Wheat | vacuole | 45.93 | 40.17 |
| TraesCS1D01G267600.2 | Wheat | endoplasmic reticulum, extracellular, vacuole | 44.97 | 39.76 |
| TraesCS7D01G272600.1 | Wheat | golgi, vacuole | 43.72 | 37.74 |
| TraesCS3D01G379100.3 | Wheat | vacuole | 43.59 | 37.22 |
| TraesCS5D01G336700.2 | Wheat | vacuole | 39.31 | 33.97 |
Protein Annotations
| KEGG:00052+3.2.1.23 | KEGG:00511+3.2.1.23 | KEGG:00531+3.2.1.23 | KEGG:00600+3.2.1.23 | KEGG:00604+3.2.1.23 | Gene3D:2.60.120.260 |
| MapMan:21.3.2.2.2 | Gene3D:3.20.20.80 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016787 | InterPro:Galactose-bd-like_sf | InterPro:Gly_Hdrlase_35_cat | InterPro:Glyco_hydro_35_CS |
| InterPro:Glycoside_Hdrlase_35 | InterPro:Glycoside_hydrolase_SF | InterPro:IPR008979 | PFAM:PF01301 | PRINTS:PR00742 | ScanProsite:PS01182 |
| PANTHER:PTHR23421 | PANTHER:PTHR23421:SF70 | SUPFAM:SSF49785 | SUPFAM:SSF51445 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| EnsemblPlantsGene:TraesCS6D01G172400 | EnsemblPlants:TraesCS6D01G172400.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6D:-:159014739..159022152
Molecular Weight (calculated)
80228.5 Da
IEP (calculated)
9.249
GRAVY (calculated)
-0.267
Length
725 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPPLVAGVL LLLTAIVAFS LAASSVNAAV SYDHRSLVIN GRRRILISGS IHYPRSTPEM WPGLIQKAKD GGLDVIQTYV FWNGHEPVKG QYYFSDRYDL
101: VRFVKLAKQA GLYVHLRIGP YVCAEWNFGG FPVWLKYVPG ISFRTDNGPF KAEMQRFVEK IVSMMKSERL FEWQGGPIIM SQVENEFGPM ESVGGSGAKP
201: YANWAAKMAV ATNTGVPWVM CKQEDAPDPV INTCNGFYCD YFTPNKKNKP AMWTEAWTGW FTSFGGAVPH RPVEDMAFAV ARFIQKGGSF VNYYMYHGGT
301: NFGRTAGGPF IATSYDYDAP IDEFGLLRQP KWGHLRDLHK AIKEAEPILV SGDPTIQSLG NYEKAYVFKS KNGACAAAFL SNYHMNAAVK VRFNGRHYDL
401: PAWSISILPD CKTAVFNTAT VKEPTLLPKM HPVVRFAWQS YSEDTNSLDG NAFTKNGLVE QLSMTWDKSD YLWYTTYVSI GANELSKNGQ WPQLTIYSAG
501: HSMQVFVNGK SYGSVYGGYN NPKLTYDGHV KMWQGSNKIS ILSSAVGLPN DGNHFERWNV GVLGPVTVSG LSSGKRDLSH QKWTYQVGLK GESLGLHTVT
601: GSSSVEWGGP GNKQPLTWHK ALFTVPAGSD PVALDMGSMG KGQMWVNGHH VGRYWSYKAP AGGCGRCSYA GTYRQDKCRS NCGELSQRWY HVPRSWLKPG
701: GNLLVVLEEY AGDLAGVAMA TRTTT
101: VRFVKLAKQA GLYVHLRIGP YVCAEWNFGG FPVWLKYVPG ISFRTDNGPF KAEMQRFVEK IVSMMKSERL FEWQGGPIIM SQVENEFGPM ESVGGSGAKP
201: YANWAAKMAV ATNTGVPWVM CKQEDAPDPV INTCNGFYCD YFTPNKKNKP AMWTEAWTGW FTSFGGAVPH RPVEDMAFAV ARFIQKGGSF VNYYMYHGGT
301: NFGRTAGGPF IATSYDYDAP IDEFGLLRQP KWGHLRDLHK AIKEAEPILV SGDPTIQSLG NYEKAYVFKS KNGACAAAFL SNYHMNAAVK VRFNGRHYDL
401: PAWSISILPD CKTAVFNTAT VKEPTLLPKM HPVVRFAWQS YSEDTNSLDG NAFTKNGLVE QLSMTWDKSD YLWYTTYVSI GANELSKNGQ WPQLTIYSAG
501: HSMQVFVNGK SYGSVYGGYN NPKLTYDGHV KMWQGSNKIS ILSSAVGLPN DGNHFERWNV GVLGPVTVSG LSSGKRDLSH QKWTYQVGLK GESLGLHTVT
601: GSSSVEWGGP GNKQPLTWHK ALFTVPAGSD PVALDMGSMG KGQMWVNGHH VGRYWSYKAP AGGCGRCSYA GTYRQDKCRS NCGELSQRWY HVPRSWLKPG
701: GNLLVVLEEY AGDLAGVAMA TRTTT
001: MYSDISVSLY IYVHIASRFS FIPITELIIS AEYLLFFIKK QKNIERFGFS KNVKMSMHFR NKAWIILAIL CFSSLIHSTE AVVTYDHKAL IINGQRRILI
101: SGSIHYPRST PEMWPDLIKK AKEGGLDVIQ TYVFWNGHEP SPGNYYFQDR YDLVKFTKLV HQAGLYLDLR IGPYVCAEWN FGGFPVWLKY VPGMVFRTDN
201: EPFKIAMQKF TKKIVDMMKE EKLFETQGGP IILSQIENEY GPMQWEMGAA GKAYSKWTAE MALGLSTGVP WIMCKQEDAP YPIIDTCNGF YCEGFKPNSD
301: NKPKLWTENW TGWFTEFGGA IPNRPVEDIA FSVARFIQNG GSFMNYYMYY GGTNFDRTAG VFIATSYDYD APIDEYGLLR EPKYSHLKEL HKVIKLCEPA
401: LVSVDPTITS LGDKQEIHVF KSKTSCAAFL SNYDTSSAAR VMFRGFPYDL PPWSVSILPD CKTEYYNTAK IRAPTILMKM IPTSTKFSWE SYNEGSPSSN
501: EAGTFVKDGL VEQISMTRDK TDYFWYFTDI TIGSDESFLK TGDNPLLTIF SAGHALHVFV NGLLAGTSYG ALSNSKLTFS QNIKLSVGIN KLALLSTAVG
601: LPNAGVHYET WNTGILGPVT LKGVNSGTWD MSKWKWSYKI GLRGEAMSLH TLAGSSAVKW WIKGFVVKKQ PLTWYKSSFD TPRGNEPLAL DMNTMGKGQV
701: WVNGHNIGRH WPAYTARGNC GRCNYAGIYN EKKCLSHCGE PSQRWYHVPR SWLKPFGNLL VIFEEWGGDP SGISLVKRTA K
101: SGSIHYPRST PEMWPDLIKK AKEGGLDVIQ TYVFWNGHEP SPGNYYFQDR YDLVKFTKLV HQAGLYLDLR IGPYVCAEWN FGGFPVWLKY VPGMVFRTDN
201: EPFKIAMQKF TKKIVDMMKE EKLFETQGGP IILSQIENEY GPMQWEMGAA GKAYSKWTAE MALGLSTGVP WIMCKQEDAP YPIIDTCNGF YCEGFKPNSD
301: NKPKLWTENW TGWFTEFGGA IPNRPVEDIA FSVARFIQNG GSFMNYYMYY GGTNFDRTAG VFIATSYDYD APIDEYGLLR EPKYSHLKEL HKVIKLCEPA
401: LVSVDPTITS LGDKQEIHVF KSKTSCAAFL SNYDTSSAAR VMFRGFPYDL PPWSVSILPD CKTEYYNTAK IRAPTILMKM IPTSTKFSWE SYNEGSPSSN
501: EAGTFVKDGL VEQISMTRDK TDYFWYFTDI TIGSDESFLK TGDNPLLTIF SAGHALHVFV NGLLAGTSYG ALSNSKLTFS QNIKLSVGIN KLALLSTAVG
601: LPNAGVHYET WNTGILGPVT LKGVNSGTWD MSKWKWSYKI GLRGEAMSLH TLAGSSAVKW WIKGFVVKKQ PLTWYKSSFD TPRGNEPLAL DMNTMGKGQV
701: WVNGHNIGRH WPAYTARGNC GRCNYAGIYN EKKCLSHCGE PSQRWYHVPR SWLKPFGNLL VIFEEWGGDP SGISLVKRTA K
Arabidopsis Description
BGAL2Beta-galactosidase [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM56]
SUBAcon: [golgi,vacuole]
SUBAcon: [golgi,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.