Factsheet for Zm00001d053585_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	vacuole
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13750.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06516	Sorghum	mitochondrion, plastid	82.27	92.16
Os02t0219200-01	Rice	peroxisome, vacuole	52.11	86.4
TraesCS6B01G214100.1	Wheat	golgi, vacuole	75.15	85.93
TraesCS6A01G185400.1	Wheat	golgi, vacuole	74.67	85.5
TraesCS6D01G172400.1	Wheat	golgi, vacuole	74.19	84.83
HORVU6Hr1G039490.6	Barley	plastid	75.51	81.94
Zm00001d046357_P001	Maize	extracellular	70.57	81.02
GSMUA_Achr7P08970_001	Banana	vacuole	62.0	70.41
GSMUA_Achr6P00880_001	Banana	golgi, vacuole	61.28	69.21
GSMUA_Achr7P08960_001	Banana	endoplasmic reticulum, golgi, vacuole	61.04	68.75
GSMUA_Achr7P08940_001	Banana	vacuole	60.43	68.44
GSMUA_Achr7P08950_001	Banana	golgi, vacuole	60.55	68.21
CDX88594	Canola	golgi, vacuole	26.66	68.0
PGSC0003DMT400000899	Potato	nucleus, peroxisome, vacuole	53.08	65.67
CDX76255	Canola	extracellular	10.13	65.62
KRH12385	Soybean	vacuole	56.45	64.91
Bra019644.1-P	Field mustard	golgi, plastid, vacuole	55.73	64.89
KRH37385	Soybean	nucleus	56.33	64.77
Solyc12g008840.1.1	Tomato	extracellular	56.21	64.36
CDX94367	Canola	mitochondrion	54.76	63.76
CDX95380	Canola	vacuole	55.73	63.55
CDX76254	Canola	golgi, nucleus, vacuole	44.63	62.93
AT5G56870.1	Thale cress	vacuole	54.52	62.43
Bra013956.1-P	Field mustard	cytosol, mitochondrion, plastid, vacuole	54.76	62.02
CDY11899	Canola	golgi, vacuole	53.44	61.36
GSMUA_Achr2P16780_001	Banana	plastid	62.24	61.36
Bra006850.1-P	Field mustard	golgi, vacuole	53.32	61.22
CDX89360	Canola	mitochondrion	51.27	60.8
CDY42755	Canola	vacuole	51.75	60.25
CDX92753	Canola	golgi, vacuole	51.75	60.25
Bra019120.1-P	Field mustard	golgi, vacuole	51.63	60.11
CDY32919	Canola	golgi, vacuole	52.23	59.97
Bra035634.1-P	Field mustard	golgi, vacuole	51.99	59.7
CDY20708	Canola	golgi, vacuole	51.87	59.56
AT4G26140.7	Thale cress	vacuole	53.44	58.83
VIT_09s0002g02120.t01	Wine grape	golgi, vacuole	59.59	58.74
Zm00001d044290_P005	Maize	golgi, vacuole	58.62	58.55
AT3G52840.2	Thale cress	golgi, vacuole	54.28	57.62
KRH10007	Soybean	nucleus	57.66	56.9
Bra027403.1-P	Field mustard	golgi, vacuole	57.54	56.85
KRH44153	Soybean	nucleus	57.78	56.82
CDY23637	Canola	golgi, vacuole	57.42	56.73
CDY69471	Canola	cytosol	28.47	56.73
CDX97513	Canola	golgi, vacuole	57.42	56.67
Solyc03g121540.2.1	Tomato	nucleus	57.18	56.56
PGSC0003DMT400006654	Potato	golgi, vacuole	57.06	56.44
KRH23324	Soybean	vacuole	57.18	56.36
KRH47126	Soybean	nucleus	57.42	56.33
CDY37486	Canola	golgi, vacuole	56.94	56.26
CDY70594	Canola	cytosol	28.23	56.25
CDY51738	Canola	golgi, vacuole	56.69	56.02
KRH19154	Soybean	golgi, mitochondrion, plastid, vacuole	56.57	55.9
AT3G13750.1	Thale cress	golgi, vacuole	57.06	55.84
PGSC0003DMT400012359	Potato	golgi, vacuole	56.57	55.83
KRH02714	Soybean	golgi, vacuole	56.45	55.78
Solyc06g062580.2.1	Tomato	nucleus	56.57	55.77
PGSC0003DMT400083896	Potato	extracellular	55.85	55.45
Solyc12g044880.1.1	Tomato	golgi, vacuole	55.73	55.33
VIT_11s0016g02200.t01	Wine grape	vacuole	55.13	54.67
Bra021506.1-P	Field mustard	vacuole	56.69	54.59
Zm00001d048440_P003	Maize	vacuole	52.59	50.17
Zm00001d027803_P002	Maize	golgi, plasma membrane, vacuole	53.56	48.37
PGSC0003DMT400011458	Potato	cytosol, nucleus, peroxisome	23.88	44.3
Zm00001d028474_P002	Maize	vacuole	47.53	43.88
Zm00001d042654_P005	Maize	endoplasmic reticulum, golgi, vacuole	42.46	40.65
Zm00001d041880_P001	Maize	extracellular, plasma membrane	43.55	39.32
Zm00001d043393_P001	Maize	extracellular	38.24	38.56
Zm00001d042656_P001	Maize	golgi, vacuole	32.33	38.18
Zm00001d010212_P002	Maize	endoplasmic reticulum, extracellular, golgi	37.76	38.17
Zm00001d053225_P005	Maize	golgi, vacuole	36.67	35.93
Zm00001d032022_P003	Maize	golgi, vacuole	35.95	35.06
Zm00001d006243_P005	Maize	endoplasmic reticulum, golgi, vacuole	32.57	31.0
Zm00001d022621_P005	Maize	vacuole	31.48	29.19

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	EntrezGene:103654804
Gene3D:2.60.120.260	MapMan:21.3.2.2.2	Gene3D:3.20.20.80	UniProt:A0A1D6QQE9	ProteinID:AQK59753.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0004565	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	GO:GO:0016798	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glyco_hydro_35_CS	InterPro:Glycoside_Hdrlase_35
InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	PFAM:PF01301	PRINTS:PR00742	ScanProsite:PS01182	PANTHER:PTHR23421
PANTHER:PTHR23421:SF70	SUPFAM:SSF49785	SUPFAM:SSF51445	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000842913A
EnsemblPlantsGene:Zm00001d053585	EnsemblPlants:Zm00001d053585_P002	EnsemblPlants:Zm00001d053585_T002	SEG:seg	:	:

Description

Beta-galactosidase

Coordinates

chr4:+:235371631..235376042

Molecular Weight (calculated)

91898.3 Da

IEP (calculated)

9.180

GRAVY (calculated)

-0.214

Length

829 amino acids

Sequence
(BLAST)

001: MAAAPRSLVT CSGGGSSSSR ILLAVFLAAA LLASAANAAV SYDHRSLVIN GRRRILISGS IHYPRSAPEM WPGLIQKAKD GGLDVVQTYV FWNGHEPAQG
101: QYYFADRYDL VRFVKLVRQA GLYVHLRVGP YVCAEWNFGY RPPPPSTNTT LLQTLKIVAD VCTCSFFSGF PVWLKYVPGI RFRTDNGPFK AAMQKFVEKI
201: VSMMKSEGLF EWQGGPIIMA QVENEFGPME SVVGSGGKPY AHWAAQMAVG TNAGVPWVMC KQDDAPDPVL NSFQFLLCVS RSLQINTCNG FYCDYFTPNN
301: KHKPTMWTEA WTGWFTKFGG AAPHRPVEDL AFAVARFVQK GGSFVNYYMY HGGTNFGRTA GGPFIATSYD YDAPIDEFGM QWLLPSLINL NSHRLPRDIC
401: RKSSQCGFYL SVVHTWNFWG GGWVYIAGLL RQPKWGHLRN MHRAIKQAEP ALVSGDPTIR SIGNYEKAYV FKSKNGACAA FLSNYHVKSA VRIRFDGRHY
501: DLPAWSISIL PDCKTAVFNT ATVKEPTLLP KMSPVMHRFA WQSYSEDTNS LDDSAFARDG LIEQLSLTWD KSDYLWYTTH VNIGSNERFL KSGQWPQLSV
601: YSAGHSMQVF VNGRSYGSVY GGYDNPKLTF SGYVKMWQGS NKISILSSAV GLPNNGDHFE LWNVGVLGPV TLSGLNEGKR DLSHQRWIYQ VGLKGESLGL
701: HTVTGSSAVE WAGPGGGTQP LTWHKALFNA PAGSDPVALD MGSMGKGQVW VNGRHAGRYW SYRAHSRGCG RCSYAGTYRE DQCTSNCGDL SQRWYHVPRS
801: WLKPSGNLLV VLEEYGGDLA GVSLATRTT

Best Arabidopsis Sequence Match ( AT3G13750.1 )
(BLAST)

001: MGSKPNAMKN VVAMAAVSAL FLLGFLVCSV SGSVSYDSRA ITINGKRRIL ISGSIHYPRS TPEMWPDLIR KAKEGGLDVI QTYVFWNGHE PSPGKYYFEG
101: NYDLVKFVKL VQQSGLYLHL RIGPYVCAEW NFGGFPVWLK YIPGISFRTD NGPFKAQMQR FTTKIVNMMK AERLFESQGG PIILSQIENE YGPMEYELGA
201: PGRSYTNWAA KMAVGLGTGV PWVMCKQDDA PDPIINACNG FYCDYFSPNK AYKPKMWTEA WTGWFTKFGG PVPYRPAEDM AFSVARFIQK GGSFINYYMY
301: HGGTNFGRTA GGPFIATSYD YDAPLDEYGL ERQPKWGHLK DLHRAIKLCE PALVSGEPTR MPLGNYQEAH VYKSKSGACS AFLANYNPKS YAKVSFGNNH
401: YNLPPWSISI LPDCKNTVYN TARVGAQTSR MKMVRVPVHG GLSWQAYNED PSTYIDESFT MVGLVEQINT TRDTSDYLWY MTDVKVDANE GFLRNGDLPT
501: LTVLSAGHAM HVFINGQLSG SAYGSLDSPK LTFRKGVNLR AGFNKIAILS IAVGLPNVGP HFETWNAGVL GPVSLNGLNG GRRDLSWQKW TYKVGLKGES
601: LSLHSLSGSS SVEWAEGAFV AQKQPLTWYK TTFSAPAGDS PLAVDMGSMG KGQIWINGQS LGRHWPAYKA VGSCSECSYT GTFREDKCLR NCGEASQRWY
701: HVPRSWLKPS GNLLVVFEEW GGDPNGITLV RREVDSVCAD IYEWQSTLVN YQLHASGKVN KPLHPKAHLQ CGPGQKITTV KFASFGTPEG TCGSYRQGSC
801: HAHHSYDAFN KLCVGQNWCS VTVAPEMFGG DPCPNVMKKL AVEAVCA

Arabidopsis Description

BGAL1Beta-galactosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCW1]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.