Factsheet for GSMUA_Achr1P12540_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P12550_001	Banana	cytosol	85.26	47.97
GSMUA_Achr10P...	Banana	cytosol	50.92	38.24
GSMUA_AchrUn_...	Banana	cytosol	15.41	35.52
GSMUA_Achr3P27817_001	Banana	cytosol	16.92	34.95
GSMUA_Achr10P...	Banana	cytosol	48.74	31.63
GSMUA_Achr2P03610_001	Banana	cytosol	51.26	29.68
GSMUA_Achr11P...	Banana	cytosol	50.92	29.4
GSMUA_Achr10P...	Banana	cytosol	52.09	29.15
GSMUA_Achr10P...	Banana	cytosol	51.76	28.74
GSMUA_Achr10P...	Banana	cytosol	50.25	28.41
GSMUA_Achr9P20610_001	Banana	cytosol	50.42	28.29
GSMUA_Achr10P...	Banana	cytosol	50.25	28.28
GSMUA_Achr2P11320_001	Banana	cytosol	42.04	24.63
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane	30.65	23.05
GSMUA_Achr1P14030_001	Banana	cytosol	40.7	23.03
KXG20980	Sorghum	cytosol	40.7	22.67
GSMUA_Achr1P14020_001	Banana	cytosol	38.69	22.41
TraesCS7B01G482300.1	Wheat	cytosol, plastid	40.7	22.21
TraesCS7A01G557700.2	Wheat	cytosol	40.54	22.18
Zm00001d014876_P005	Maize	cytosol	39.87	22.18
TraesCS7D01G552700.1	Wheat	cytosol	40.2	21.98
HORVU7Hr1G120540.3	Barley	cytosol	40.7	21.97
PGSC0003DMT400079012	Potato	cytosol	5.7	21.66
GSMUA_AchrUn_...	Banana	cytosol	25.96	21.5
Os02t0456800-01	Rice	cytosol	39.2	21.49
GSMUA_Achr9P23050_001	Banana	cytosol	39.03	21.44
GSMUA_Achr3P28030_001	Banana	plasma membrane	37.19	20.56
GSMUA_Achr3P27810_001	Banana	cytosol, endoplasmic reticulum	27.81	18.93
GSMUA_Achr3P27790_001	Banana	cytosol	28.64	18.87
VIT_04s0023g02380.t01	Wine grape	cytosol	26.47	18.59
Solyc07g053010.1.1	Tomato	cytosol	26.63	18.09
PGSC0003DMT400009065	Potato	cytosol	25.63	18.04
PGSC0003DMT400067280	Potato	cytosol, mitochondrion	26.63	18.01
Solyc02g084890.1.1	Tomato	cytosol, extracellular, nucleus	25.29	17.76
AT3G50950.1	Thale cress	cytosol	24.29	17.02
GSMUA_Achr3P27830_001	Banana	cytosol, peroxisome	21.94	16.35
Solyc07g053020.1.1	Tomato	cytosol	23.12	16.2
PGSC0003DMT400067354	Potato	cytosol	23.28	15.89
GSMUA_AchrUn_...	Banana	cytosol	18.09	15.7
GSMUA_AchrUn_...	Banana	plasma membrane	36.18	15.0
GSMUA_AchrUn_...	Banana	cytosol	13.9	13.15
GSMUA_AchrUn_...	Banana	cytosol	12.23	12.61
CDX73766	Canola	plastid	24.29	11.23
Bra036845.1-P	Field mustard	plastid	24.29	11.23
GSMUA_AchrUn_...	Banana	cytosol	8.54	8.76
GSMUA_AchrUn_...	Banana	cytosol	1.34	2.6
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0
GSMUA_Achr10P...	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr1P12540_001	EnsemblPlants:GSMUA_Achr1T12540_001	EnsemblPlantsGene:GSMUA_Achr1G12540_001	Gene3D:3.40.50.300	Gene3D:3.80.10.10	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0043531	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:NB-ARC
InterPro:P-loop_NTPase	InterPro:RX-like_CC	PANTHER:PTHR44518	PFAM:PF00931	PRINTS:PR00364	SEG:seg
SUPFAM:SSF52058	SUPFAM:SSF52540	UniParc:UPI0002952745	UniProt:M0RZB2	MapMan:35.1	:

Description

NBS-LRR class resistance protein (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr1G12540_001]

Coordinates

chr1:-:9636386..9638176

Molecular Weight (calculated)

68132.4 Da

IEP (calculated)

6.231

GRAVY (calculated)

-0.278

Length

597 amino acids

Sequence
(BLAST)

001: MAMVLEFFVE RFLLKITNFA AGEICKVLCV REEVETLERR LARIKGFLLT AEQRRHVDPA TDTRVRELKD VMYDADDIID LCIIEGGSLL KSRASTTFAV
101: CNPSSSQSSS YFGSIKHRYE ISGRIKRLND RLKEITEDRS TIPDVENVKI DPPHRPERSP GTPSIEVKAD IIGTQIEGAA QNLINSIVEI SEKPKCVVFG
201: IVGMGGIGKT TLARKVFNDE RIIQNYPIRV WLCVTKKYSE TDLLKEMIRS VGGNVEGAKS RAELERKLVS LLSKNLLLVL DDVWSPEVWE DFLKNPLMHE
301: AASNCRIVIT TRDENVARNL GDNVHHVEKM DEECGWELLW KTVWDNREKG DISRFKEIGT KMVQKCDGLP LAIKVLAGAL RSRRSTMEWE KVLRSDLWKM
401: KKLDENVLGV LFLSYEDLPS HLKQCFLHCS LFPDKADMYR KDLIRLWVAE GFTEENGELS MEEIAEGYYE DMIWRNLLQV DPTFVDGSRC TMHDLLRSLA
501: QSLIQGEGVY VSDLQSLNSD PLTKLRRLST SNIGERIQLP DRIVEEKCLR SLLIFDSPRA RTIGDDLFKK LRNLRVLLLN DTSIESLPKS IGELSHL

Best Arabidopsis Sequence Match ( AT1G53350.1 )
(BLAST)

001: MAEAVVSFGV EKLWELLSRE SARLNGIDEQ VDGLKRQLGR LQSLLKDADA KKNETERVRN FLEDVKDIVY DADDIIESFL LNELRGKEKG IKKQVRTLAC
101: FLVDRRKFAS DIEGITKRIS EVIVGMQSLG IQHIADGGGR SLSLQERQRE IRQTFSRNSE SDLVGLDQSV EELVDHLVEN DSVQVVSVSG MGGIGKTTLA
201: RQVFHHDIVR RHFDGFSWVC VSQQFTRKDV WQRILQDLRP YDEGIIQMDE YTLQGELFEL LESGRYLLVL DDVWKEEDWD RIKAVFPHKR GWKMLLTSRN
301: EGLGLHADPT CFAFRPRILT PEQSWKLFER IVSSRRDKTE FKVDEAMGKE MVTYCGGLPL AVKVLGGLLA KKHTVLEWKR VHSNIVTHIV GKSGLSDDNS
401: NSVYRVLSLS YEDLPMQLKH CFFYLAHFPE DYKIDVKILF NYWVAEGIIT PFHDGSTIQD TGESYLEELV RRNMVVVEES YLTSRIEYCQ MHDMMREVCL
501: SKAKEENFIR VVKVPTTTST TINAQSPCRS RRLVLHSGNA LHMLGHKDNK KARSVLIFGV EEKFWKPRGF QCLPLLRVLD LSYVQFEGGK LPSSIGDLIH
601: LRFLSLYEAG VSHLPSSLGN LKLLLCLNLG VADRLLVHVP NVLKEMQELR YLRLPRSMPA KTKLELGDLV NLESLTNFST KHGSVTDLLR MTKLSVLNVI
701: FSGECTFETL LLSLRELRNL ETLSFHDFQK VSVANHGGEL LVLDFIHLKD LTLSMHLPRF PDQYRFPPHL AHIWLIGCRM EEDPMPILEK LLHLKSVYLS
801: SGAFLGRRMV CSKGGFPQLL ALKMSYKKEL VEWRVEEGSM PCLRTLTIDN CKKLKQLPDG LKYVTCLKEL KIERMKREWT ERLVIGGEDY YKVQHIPSVQ
901: FINCDH

Arabidopsis Description

RPP8L2Probable disease resistance RPP8-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P0C8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.