Factsheet for PGSC0003DMT400067280

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053010.1.1	Tomato	cytosol	94.22	94.65
PGSC0003DMT400079012	Potato	cytosol	13.59	76.43
PGSC0003DMT400067354	Potato	cytosol	52.77	53.26
PGSC0003DMT400009065	Potato	cytosol	38.73	40.33
HORVU3Hr1G012800.1	Barley	cytosol	12.0	31.93
HORVU3Hr1G012610.1	Barley	plastid	9.74	28.01
TraesCS3B01G081400.1	Wheat	cytosol	14.38	27.73
GSMUA_Achr3P27817_001	Banana	cytosol	8.72	26.64
GSMUA_Achr1P12540_001	Banana	cytosol	18.01	26.63
HORVU3Hr1G012760.2	Barley	cytosol	13.82	26.46
TraesCS5A01G533700.1	Wheat	cytosol	19.25	26.36
HORVU3Hr1G012650.19	Barley	cytosol	13.59	26.03
TraesCS3A01G068300.1	Wheat	cytosol, extracellular	13.59	25.81
TraesCS3A01G068600.1	Wheat	cytosol	13.7	25.69
GSMUA_Achr10P...	Banana	cytosol	23.1	25.66
Os11t0676200-00	Rice	cytosol	16.53	25.61
TraesCS3B01G083700.1	Wheat	cytosol	15.86	25.59
GSMUA_AchrUn_...	Banana	cytosol	7.47	25.48
TraesCS3B01G081900.1	Wheat	cytosol	19.03	25.38
TraesCS3D01G068200.1	Wheat	cytosol	17.55	25.37
TraesCS4B01G365400.1	Wheat	cytosol	23.22	24.88
Os11t0676800-00	Rice	cytosol	17.89	24.69
TraesCS3B01G082500.1	Wheat	cytosol	15.18	24.5
TraesCS3B01G081300.1	Wheat	cytosol	13.14	24.47
GSMUA_Achr10P...	Banana	cytosol	25.48	24.46
TraesCS3A01G068500.2	Wheat	cytosol, extracellular	15.63	24.08
TraesCS6B01G070200.1	Wheat	cytosol	24.58	23.77
Os11t0676100-00	Rice	cytosol, plasma membrane	11.32	23.58
Os11t0673900-00	Rice	cytosol, plasma membrane	22.08	23.41
TraesCS3A01G069200.1	Wheat	extracellular	15.97	23.38
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane	20.72	23.05
TraesCS3B01G088100.1	Wheat	cytosol	14.5	22.65
GSMUA_Achr3P27790_001	Banana	cytosol	22.99	22.41
TraesCS7A01G374100.1	Wheat	cytosol	25.14	22.24
TraesCS3A01G068900.1	Wheat	cytosol	8.83	22.22
TraesCS1B01G169700.1	Wheat	cytosol	23.44	22.21
GSMUA_Achr2P11320_001	Banana	cytosol	25.59	22.18
GSMUA_Achr3P27810_001	Banana	cytosol, endoplasmic reticulum	21.97	22.12
GSMUA_Achr2P03610_001	Banana	cytosol	25.71	22.02
GSMUA_Achr1P14030_001	Banana	cytosol	26.27	21.99
GSMUA_Achr1P14020_001	Banana	cytosol	25.48	21.82
GSMUA_AchrUn_...	Banana	cytosol	16.99	21.8
GSMUA_Achr3P28030_001	Banana	plasma membrane	26.61	21.76
GSMUA_Achr3P27830_001	Banana	cytosol, peroxisome	19.71	21.72
Os11t0623800-00	Rice	cytosol	25.82	21.63
TraesCS3B01G082900.1	Wheat	cytosol	6.68	21.53
GSMUA_AchrUn_...	Banana	cytosol	14.04	21.42
GSMUA_Achr1P12550_001	Banana	cytosol	25.71	21.39
KXG29105	Sorghum	cytosol	24.69	21.39
TraesCS3B01G082000.1	Wheat	cytosol	6.8	21.35
TraesCS5B01G291600.1	Wheat	cytosol, extracellular	24.58	21.25
GSMUA_AchrUn_...	Banana	cytosol	15.18	21.24
TraesCS3A01G068700.1	Wheat	cytosol	24.35	21.22
GSMUA_Achr10P...	Banana	cytosol	25.82	21.21
GSMUA_Achr10P...	Banana	cytosol	25.59	21.18
GSMUA_Achr11P...	Banana	cytosol	24.69	21.08
KXG20980	Sorghum	cytosol	25.59	21.08
TraesCS3B01G082400.1	Wheat	cytosol	23.9	21.08
TraesCS5A01G292200.1	Wheat	cytosol	24.35	21.06
GSMUA_Achr9P20610_001	Banana	cytosol	25.37	21.05
TraesCS3B01G081500.2	Wheat	cytosol	24.24	21.02
TraesCS3A01G069300.1	Wheat	cytosol	24.01	21.01
KXG39005	Sorghum	cytosol	24.69	20.98
GSMUA_Achr10P...	Banana	cytosol	25.14	20.92
Os11t0674400-00	Rice	cytosol, plasma membrane	24.46	20.91
TraesCS2B01G607700.1	Wheat	cytosol	23.9	20.89
TraesCS3A01G068200.1	Wheat	cytosol	24.01	20.83
TraesCS3B01G081600.1	Wheat	cytosol	23.9	20.77
HORVU3Hr1G012510.23	Barley	cytosol	23.9	20.69
TraesCS3B01G083500.1	Wheat	cytosol	23.78	20.67
GSMUA_AchrUn_...	Banana	cytosol	16.87	20.67
TraesCS3B01G083600.1	Wheat	cytosol	23.22	20.6
Zm00001d014876_P005	Maize	cytosol	25.03	20.6
GSMUA_Achr9P23050_001	Banana	cytosol	25.25	20.52
TraesCS3B01G081700.1	Wheat	cytosol	23.44	20.47
GSMUA_Achr10P...	Banana	cytosol	24.46	20.45
TraesCS3A01G068800.1	Wheat	cytosol, extracellular	23.56	20.45
TraesCS7A01G557700.2	Wheat	cytosol	25.25	20.44
TraesCS3D01G068800.1	Wheat	cytosol	22.76	20.41
HORVU7Hr1G120540.3	Barley	cytosol	25.48	20.34
TraesCS7D01G552700.1	Wheat	cytosol	25.14	20.33
TraesCS3D01G068100.1	Wheat	extracellular	23.33	20.18
TraesCS7B01G482300.1	Wheat	cytosol, plastid	24.92	20.11
HORVU3Hr1G012340.8	Barley	cytosol	15.86	20.06
TraesCS3B01G088000.1	Wheat	cytosol	22.42	20.04
Os01t0149500-01	Rice	mitochondrion, nucleus	22.42	20.02
HORVU3Hr1G012660.4	Barley	cytosol	23.67	20.02
HORVU3Hr1G013270.1	Barley	cytosol	22.31	19.94
HORVU5Hr1G122310.2	Barley	cytosol	20.16	19.87
TraesCS3A01G069800.2	Wheat	cytosol	20.95	19.81
TraesCS3B01G082800.2	Wheat	cytosol	22.88	19.75
OQU80132	Sorghum	cytosol	21.86	19.71
TraesCS3B01G485200.1	Wheat	cytosol	21.86	19.65
TraesCS3B01G485300.1	Wheat	cytosol	21.86	19.65
TraesCS3D01G073600.1	Wheat	cytosol, mitochondrion, plasma membrane	16.99	19.61
HORVU3Hr1G012860.1	Barley	cytosol	21.63	19.59
Os01t0149350-00	Rice	cytosol	21.86	19.49
Os02t0456800-01	Rice	cytosol	24.01	19.47
OQU89955	Sorghum	cytosol	23.56	19.3
Os07t0481400-01	Rice	cytosol	23.56	19.26
TraesCS3A01G073700.1	Wheat	cytosol	21.52	19.25
OQU84002	Sorghum	cytosol	13.7	19.24
HORVU3Hr1G012880.4	Barley	cytosol	14.95	19.21
TraesCS3A01G073800.1	Wheat	cytosol	21.52	19.21
TraesCS3B01G083800.1	Wheat	cytosol	14.95	19.16
GSMUA_AchrUn_...	Banana	cytosol	6.68	19.16
Os08t0332600-00	Rice	cytosol	17.44	19.06
Zm00001d021492_P002	Maize	cytosol	23.33	19.06
TraesCS3B01G088200.1	Wheat	cytosol	21.18	18.93
TraesCS3B01G082200.1	Wheat	endoplasmic reticulum, nucleus, plasma membrane	20.5	18.91
HORVU3Hr1G013250.2	Barley	cytosol	21.18	18.91
TraesCS3D01G073500.1	Wheat	cytosol	19.25	18.89
TraesCS5B01G178900.1	Wheat	cytosol	20.39	18.5
TraesCS5A01G181200.1	Wheat	mitochondrion	20.39	18.46
Os09t0313600-00	Rice	plasma membrane	21.74	18.41
TraesCS5D01G185600.1	Wheat	cytosol	21.63	18.23
HORVU0Hr1G039660.8	Barley	cytosol	21.63	18.19
Zm00001d035129_P001	Maize	plasma membrane	21.52	17.99
Zm00001d021491_P001	Maize	cytosol, plasma membrane	22.2	17.61
HORVU3Hr1G012620.2	Barley	cytosol	9.4	17.44
Os07t0481300-01	Rice	cytosol	21.97	17.29
EER97218	Sorghum	mitochondrion, plasma membrane	21.74	17.2
GSMUA_AchrUn_...	Banana	cytosol	11.32	17.18
Os09t0313500-01	Rice	plasma membrane	20.61	16.62
TraesCS5A01G181400.1	Wheat	plastid	20.39	16.61
TraesCS5B01G179100.1	Wheat	plastid	20.27	16.51
TraesCS5D01G185700.1	Wheat	plastid	20.16	16.42
Os11t0677000-00	Rice	cytosol	8.04	16.06
Os11t0673600-00	Rice	cytosol, plasma membrane	8.95	15.99
GSMUA_AchrUn_...	Banana	plasma membrane	25.25	15.49
TraesCS7B01G491900.1	Wheat	mitochondrion	3.4	14.93
Zm00001d035125_P001	Maize	cytosol, mitochondrion, plasma membrane	20.05	13.99
GSMUA_Achr10P...	Banana	cytosol	5.44	13.68
HORVU5Hr1G055260.1	Barley	mitochondrion, plasma membrane	8.49	13.46
Os11t0677101-00	Rice	plasma membrane	6.12	13.43
HORVU1Hr1G040540.18	Barley	mitochondrion	21.97	12.84
TraesCS1A01G152300.1	Wheat	cytosol	20.05	12.79
TraesCS1D01G149200.1	Wheat	cytosol	20.05	12.79
Zm00001d032724_P001	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	21.52	12.73
KXG38346	Sorghum	nucleus	21.86	12.66
Os11t0675200-00	Rice	cytosol	4.3	11.41
GSMUA_AchrUn_...	Banana	cytosol	4.19	10.91
TraesCSU01G061600.1	Wheat	cytosol	0.23	1.71
TraesCS6B01G070000.1	Wheat	cytosol	0.23	0.45

Protein Annotations

Gene3D:1.10.8.430	EntrezGene:102602996	Gene3D:3.40.50.300	Gene3D:3.80.10.10	MapMan:35.1	InterPro:AAA+_ATPase
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0006950	GO:GO:0006952
GO:GO:0008150	GO:GO:0043531	InterPro:IPR032675	InterPro:LRR_dom_sf	UniProt:M1CH05	InterPro:NB-ARC
InterPro:P-loop_NTPase	PFAM:PF00931	EnsemblPlantsGene:PGSC0003DMG400026161	PGSC:PGSC0003DMG400026161	EnsemblPlants:PGSC0003DMT400067280	PRINTS:PR00364
PANTHER:PTHR23155	PANTHER:PTHR23155:SF759	SMART:SM00382	SUPFAM:SSF52058	SUPFAM:SSF52540	UniParc:UPI00029589AC
RefSeq:XP_006360547.1	SEG:seg	:	:	:	:

Description

NBS-LRR type disease resistance protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026161]

Coordinates

chr7:-:47641291..47645024

Molecular Weight (calculated)

100989.0 Da

IEP (calculated)

6.177

GRAVY (calculated)

-0.293

Length

883 amino acids

Sequence
(BLAST)

001: MGEAIMEAVA ELIVKDLSKQ VNIHAQYAIQ FESEFEVMKR ELNLMRSYLT EANRLKGNNN SVKTTLSELQ ELIYEADNVV TDCQIREDHL RMKGNPSCLL
101: PSPREISFRY ITGKKLTGLN KKILKMHQKL RTFVGPITEQ SRGDENISRR IRWTSHIFDQ SEIVGLSEDT RKIKEWILSH SDSLHRVGIV GMGGLGKTTI
201: AQKVYHDRQV NVRFQKKVWV SVSQTYDELL IMKGILKQLN GDDSGTDKGD LLNRILEALS HKSYLIVLDD VWSIDDGWWD RISRGLPKFV EHNCCIIITS
301: RNDDVVKRMG ATESRIHRPR LLDDEESWSL FCKFAFLSTK GKCNTQLEEV GREIVRKCHG LPLAIKTTGG MLSSKPHSLG EWTRICENFR EKLVSDSESN
401: ISVMASLQLS YDELPAHLKQ CMLCFSIYPD DHEIEAEQLV RWWVGEGLVR GNGTETATDV AFGYLSELVS RCLVEAVQRR SFDGKVYSCK VHDMVRDMTI
501: LVAEDEKFCS FNRGRNIATV NSRHLGVTRE TTFQSLYGNS KLRALLLTTT NYIGFNRRIA LAEIKTLRVL DLSCVKLDKI CMIDLWQWIT SLKRLAYLNL
601: RNVANLDEIS DSVRKLWGLQ ILVLRECKEL KMLPTSITTL PRLAILDVGS CPSLSCLPQG LSRLSNLEEL YGFKIPSPAT TEACRLSEIV ALTQLRVLHL
701: DIMEESMIDD KELAALKQLE LLRVLSINAG DCENKDIIRK LDNLSPPTRV EELYLRHYLG ETTPAWINPI SLPQLQYLCI EDSRVLNHMS EIFWGDNEDN
801: WNVEGLCLKF LPRLEETWET FQSAMPSLKY LEVGHCNSLK NFRCNVEGLG YWTKPEEEEQ NKGDQDVISC NEGVNEGEFD DMH

Best Arabidopsis Sequence Match ( AT3G50950.1 )
(BLAST)

001: MVDAVVTVFL EKTLNILEEK GRTVSDYRKQ LEDLQSELKY MQSFLKDAER QKRTNETLRT LVADLRELVY EAEDILVDCQ LADGDDGNEQ RSSNAWLSRL
101: HPARVPLQYK KSKRLQEINE RITKIKSQVE PYFEFITPSN VGRDNGTDRW SSPVYDHTQV VGLEGDKRKI KEWLFRSNDS QLLIMAFVGM GGLGKTTIAQ
201: EVFNDKEIEH RFERRIWVSV SQTFTEEQIM RSILRNLGDA SVGDDIGTLL RKIQQYLLGK RYLIVMDDVW DKNLSWWDKI YQGLPRGQGG SVIVTTRSES
301: VAKRVQARDD KTHRPELLSP DNSWLLFCNV AFAANDGTCE RPELEDVGKE IVTKCKGLPL TIKAVGGLLL CKDHVYHEWR RIAEHFQDEL RGNTSETDNV
401: MSSLQLSYDE LPSHLKSCIL TLSLYPEDCV IPKQQLVHGW IGEGFVMWRN GRSATESGED CFSGLTNRCL IEVVDKTYSG TIITCKIHDM VRDLVIDIAK
501: KDSFSNPEGL NCRHLGISGN FDEKQIKVNH KLRGVVSTTK TGEVNKLNSD LAKKFTDCKY LRVLDISKSI FDAPLSEILD EIASLQHLAC LSLSNTHPLI
601: QFPRSMEDLH NLQILDASYC QNLKQLQPCI VLFKKLLVLD MTNCGSLECF PKGIGSLVKL EVLLGFKPAR SNNGCKLSEV KNLTNLRKLG LSLTRGDQIE
701: EEELDSLINL SKLMSISINC YDSYGDDLIT KIDALTPPHQ LHELSLQFYP GKSSPSWLSP HKLPMLRYMS ICSGNLVKMQ EPFWGNENTH WRIEGLMLSS
801: LSDLDMDWEV LQQSMPYLRT VTANWCPELE SFAIEDVGFR GGVWMKTPLH RT

Arabidopsis Description

RPP13L4Disease resistance RPP13-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q38834]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.