Factsheet for GSMUA_Achr3P28030_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P27810_001	Banana	cytosol, endoplasmic reticulum	70.46	86.77
GSMUA_AchrUn_...	Banana	cytosol	45.46	84.8
GSMUA_Achr3P27790_001	Banana	cytosol	69.26	82.56
GSMUA_Achr3P27830_001	Banana	cytosol, peroxisome	60.74	81.9
GSMUA_AchrUn_...	Banana	cytosol	47.41	81.14
GSMUA_AchrUn_...	Banana	cytosol	19.44	81.08
GSMUA_AchrUn_...	Banana	cytosol	51.57	80.96
GSMUA_AchrUn_...	Banana	cytosol, plasma membrane	59.35	80.73
GSMUA_AchrUn_...	Banana	cytosol	25.0	79.65
GSMUA_AchrUn_...	Banana	cytosol	51.94	77.81
GSMUA_Achr3P27817_001	Banana	cytosol	20.28	75.78
GSMUA_AchrUn_...	Banana	cytosol	19.07	66.88
GSMUA_Achr9P23050_001	Banana	cytosol	56.3	55.93
GSMUA_AchrUn_...	Banana	plasma membrane	71.67	53.75
GSMUA_Achr2P11320_001	Banana	cytosol	37.22	39.45
GSMUA_Achr1P12540_001	Banana	cytosol	20.56	37.19
GSMUA_Achr10P...	Banana	cytosol	31.67	37.17
TraesCS6B01G070200.1	Wheat	cytosol	31.39	37.13
GSMUA_Achr1P14020_001	Banana	cytosol	35.0	36.66
GSMUA_Achr10P...	Banana	cytosol	26.57	36.1
GSMUA_Achr1P14030_001	Banana	cytosol	35.19	36.02
GSMUA_Achr11P...	Banana	cytosol	33.52	35.01
GSMUA_Achr1P12550_001	Banana	cytosol	33.98	34.59
GSMUA_Achr10P...	Banana	cytosol	34.35	34.51
GSMUA_Achr2P03610_001	Banana	cytosol	32.59	34.14
GSMUA_Achr10P...	Banana	cytosol	33.33	33.74
GSMUA_Achr9P20610_001	Banana	cytosol	32.96	33.46
TraesCS1B01G169700.1	Wheat	cytosol	28.61	33.15
GSMUA_Achr10P...	Banana	cytosol	31.94	32.52
GSMUA_Achr10P...	Banana	cytosol	31.57	32.29
OQU89955	Sorghum	cytosol	29.72	29.78
GSMUA_AchrUn_...	Banana	cytosol	15.83	29.38
Os07t0481400-01	Rice	cytosol	29.35	29.35
Zm00001d021492_P002	Maize	cytosol	29.26	29.23
EER97218	Sorghum	mitochondrion, plasma membrane	29.81	28.85
TraesCS5A01G181200.1	Wheat	mitochondrion	26.02	28.82
Zm00001d021491_P001	Maize	cytosol, plasma membrane	29.54	28.66
PGSC0003DMT400009065	Potato	cytosol	22.5	28.66
TraesCS5D01G185600.1	Wheat	cytosol	27.69	28.53
Solyc07g053020.1.1	Tomato	cytosol	22.5	28.52
Os09t0313500-01	Rice	plasma membrane	28.89	28.49
TraesCS5B01G178900.1	Wheat	cytosol	25.56	28.37
HORVU0Hr1G039660.8	Barley	cytosol	27.41	28.19
Os07t0481300-01	Rice	cytosol	29.17	28.07
Solyc02g084890.1.1	Tomato	cytosol, extracellular, nucleus	21.94	27.88
VIT_04s0023g02380.t01	Wine grape	cytosol	21.85	27.76
PGSC0003DMT400067354	Potato	cytosol	22.41	27.66
AT3G50950.1	Thale cress	cytosol	21.48	27.23
Os09t0313600-00	Rice	plasma membrane	26.11	27.04
TraesCS5A01G181400.1	Wheat	plastid	27.13	27.03
Solyc07g053010.1.1	Tomato	cytosol	21.85	26.85
PGSC0003DMT400067280	Potato	cytosol, mitochondrion	21.76	26.61
TraesCS5B01G179100.1	Wheat	plastid	26.67	26.57
TraesCS5D01G185700.1	Wheat	plastid	26.67	26.57
GSMUA_Achr10P...	Banana	cytosol	8.52	26.21
HORVU5Hr1G055260.1	Barley	mitochondrion, plasma membrane	13.15	25.49
PGSC0003DMT400079012	Potato	cytosol	3.61	24.84
Zm00001d035125_P001	Maize	cytosol, mitochondrion, plasma membrane	27.69	23.64
Zm00001d035129_P001	Maize	plasma membrane	22.78	23.3
TraesCS7B01G491900.1	Wheat	mitochondrion	4.17	22.39
Zm00001d032724_P001	Maize	cytosol, endoplasmic reticulum, mitochondrion, plastid	30.46	22.04
KXG38346	Sorghum	nucleus	30.46	21.59
TraesCS1D01G149200.1	Wheat	cytosol	25.56	19.94
TraesCS1A01G152300.1	Wheat	cytosol	25.56	19.94
HORVU1Hr1G040540.18	Barley	mitochondrion	27.87	19.92
CDX73766	Canola	plastid	21.39	17.89
Bra036845.1-P	Field mustard	plastid	21.39	17.89
TraesCS6B01G070000.1	Wheat	cytosol	1.85	4.46

Protein Annotations

Gene3D:1.10.8.430	Gene3D:3.40.50.300	Gene3D:3.80.10.10	MapMan:35.1	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0043531	EnsemblPlantsGene:GSMUA_Achr3G28030_001	EnsemblPlants:GSMUA_Achr3P28030_001	EnsemblPlants:GSMUA_Achr3T28030_001
InterPro:IPR032675	InterPro:LRR_dom_sf	UniProt:M0SIG9	InterPro:NB-ARC	InterPro:P-loop_NTPase	PFAM:PF00931
PRINTS:PR00364	PANTHER:PTHR44518	InterPro:RX-like_CC	SUPFAM:SSF52047	SUPFAM:SSF52058	SUPFAM:SSF52540
UniParc:UPI00029678D7	SEG:seg	:	:	:	:

Description

NBS-LRR disease resistance protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G28030_001]

Coordinates

chr3:-:27429798..27433040

Molecular Weight (calculated)

121517.0 Da

IEP (calculated)

5.677

GRAVY (calculated)

-0.184

Length

1080 amino acids

Sequence
(BLAST)

0001: MAVVLEAFIS GLVGTLMDMA KEEVDLLLGV PGEIQKLQRT LRNIQYVLRD AEKRRIEDED VNNWLMELKD VMYDADDVLD ECRMEAEKWT PRESDPKPST
0101: SCGFPVFACF REVKFRKKVG VKIKVLNDRL EEISARRSKL QLHVSAAGPR VVPRVSRITS PVMESDMVGE RLEEDAEALV EQLTKQDPSK NVVVLAIVGI
0201: GGIGKTTVAQ KVFNDGKIKA SFRTTIWVCV SQEFNETDLL RNIVKGAGGS HGGEQSRSLL EPLVEDLLRG NKFLLVLDDV WDAQIWDDLL RNPLQGGAAG
0301: SRVLVTTRNA GIARQMKAAH VHEMKLLPPE DGWSLLCKKA TMNAEEERDA QDLKDTGMKI VEKCGGLPLA IKTIGGVLCT RGLNRSVWEE VLRSAAWSRT
0401: GLPEGVHGAL YLSYQDLPSH LKQCFLYCAL FREDFEFYGP EIVRLWIAEG FVEARGDVSL EETGEQYYIE LHHRCLLQSL QPLSVDYDEY SKMHDLLRSL
0501: GHFLSRDESL FISDVQNEWK SGVVPMKLRR LSIVATETTD IQHIVSLTKR HESVRTLLVE GTRGIVGDID DSLKNLVRLR VLYLMGINIQ SLPHYIGNLI
0601: HLRYLIVYWS FITELPESIC NLMNLQFLIL SGCTKLTQIP QGIDRLVNLR TLDCIGTRLE SFPYGIKRLK HLNELQGFVV NTGNGMCPLE ALGGLLELRY
0701: LSIFKLERAC MEADPRRDTS GLKGNQKLKH LRLECSDRPT SDGHTEEEIE RMEKVLDVAL HPPSSVVSLS LQNFFGLRYP SWMASASISS LLPNISRLEL
0801: INCDHWPLLP PLGKLPSLEF LFIRGARAVT TIGPEFFGCE AAVATGHDPE RNSKRPSSSS SSSSSSSTTT TSPPLFPKLR QLELWNMTNM EVWDWVAGGF
0901: AMHRLDKLVL VNCPKLKCLP EGLIRQATCL TTLDLSYVCA LKSIRGFPSV KQLSISGKSD LEIVTDLPAL ELLKLGNFLF DQKHLPEWLA ACPASFTTLQ
1001: RLDVSGTTQL LRRCLQNGAD WPMIKHFTIF SMKDDRGNYI NYIKHSCTFE TNLVDDDAAF AAAAEEEEEE EEEEEEERHQ

Best Arabidopsis Sequence Match ( AT3G50950.1 )
(BLAST)

001: MVDAVVTVFL EKTLNILEEK GRTVSDYRKQ LEDLQSELKY MQSFLKDAER QKRTNETLRT LVADLRELVY EAEDILVDCQ LADGDDGNEQ RSSNAWLSRL
101: HPARVPLQYK KSKRLQEINE RITKIKSQVE PYFEFITPSN VGRDNGTDRW SSPVYDHTQV VGLEGDKRKI KEWLFRSNDS QLLIMAFVGM GGLGKTTIAQ
201: EVFNDKEIEH RFERRIWVSV SQTFTEEQIM RSILRNLGDA SVGDDIGTLL RKIQQYLLGK RYLIVMDDVW DKNLSWWDKI YQGLPRGQGG SVIVTTRSES
301: VAKRVQARDD KTHRPELLSP DNSWLLFCNV AFAANDGTCE RPELEDVGKE IVTKCKGLPL TIKAVGGLLL CKDHVYHEWR RIAEHFQDEL RGNTSETDNV
401: MSSLQLSYDE LPSHLKSCIL TLSLYPEDCV IPKQQLVHGW IGEGFVMWRN GRSATESGED CFSGLTNRCL IEVVDKTYSG TIITCKIHDM VRDLVIDIAK
501: KDSFSNPEGL NCRHLGISGN FDEKQIKVNH KLRGVVSTTK TGEVNKLNSD LAKKFTDCKY LRVLDISKSI FDAPLSEILD EIASLQHLAC LSLSNTHPLI
601: QFPRSMEDLH NLQILDASYC QNLKQLQPCI VLFKKLLVLD MTNCGSLECF PKGIGSLVKL EVLLGFKPAR SNNGCKLSEV KNLTNLRKLG LSLTRGDQIE
701: EEELDSLINL SKLMSISINC YDSYGDDLIT KIDALTPPHQ LHELSLQFYP GKSSPSWLSP HKLPMLRYMS ICSGNLVKMQ EPFWGNENTH WRIEGLMLSS
801: LSDLDMDWEV LQQSMPYLRT VTANWCPELE SFAIEDVGFR GGVWMKTPLH RT

Arabidopsis Description

RPP13L4Disease resistance RPP13-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q38834]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.